gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 34 - 128 | 5.7e-10 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 653 |
| AciI | CCGC | 1 cut(s) | 492 |
| AclWI | GGATC | 1 cut(s) | 271 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 472 |
| AcuI | CTGAAG | 2 cut(s) | 119, 326 |
| AcyI | GRCGYC | 1 cut(s) | 528 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 296, 524 |
| AgsI | TTSAA | 1 cut(s) | 346 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 227, 259 |
| AluBI | AGCT | 4 cut(s) | 148, 352, 382, 452 |
| AluI | AGCT | 4 cut(s) | 148, 352, 382, 452 |
| AlwI | GGATC | 1 cut(s) | 271 |
| AoxI | GGCC | 4 cut(s) | 3, 94, 270, 298 |
| ApeKI | GCWGC | 1 cut(s) | 467 |
| ApoI | RAATTY | 1 cut(s) | 472 |
| AspS9I | GGNCC | 2 cut(s) | 299, 515 |
| AsuHPI | GGTGA | 5 cut(s) | 24, 52, 239, 491, 637 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| BaeGI | GKGCMC | 3 cut(s) | 488, 588, 656 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 653 |
| BbsI | GAAGAC | 2 cut(s) | 275, 314 |
| BbvI | GCAGC | 1 cut(s) | 454 |
| BceAI | ACGGC | 1 cut(s) | 84 |
| BfaI | CTAG | 4 cut(s) | 140, 219, 291, 462 |
| BfmI | CTRYAG | 1 cut(s) | 453 |
| BisI | GCNGC | 1 cut(s) | 468 |
| BlsI | GCNGC | 1 cut(s) | 469 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 2 cut(s) | 299, 515 |
| BmiI | GGNNCC | 1 cut(s) | 655 |
| BmsI | GCATC | 1 cut(s) | 241 |
| BpiI | GAAGAC | 2 cut(s) | 275, 314 |
| BpmI | CTGGAG | 1 cut(s) | 254 |
| BsaHI | GRCGYC | 1 cut(s) | 528 |
| BsaJI | CCNNGG | 1 cut(s) | 657 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 227, 257 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 296, 524 |
| Bse1I | ACTGG | 1 cut(s) | 237 |
| BseDI | CCNNGG | 1 cut(s) | 657 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 296, 524 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BseNI | ACTGG | 1 cut(s) | 237 |
| BseSI | GKGCMC | 3 cut(s) | 488, 588, 656 |
| BseXI | GCAGC | 1 cut(s) | 454 |
| BsgI | GTGCAG | 1 cut(s) | 389 |
| BshFI | GGCC | 4 cut(s) | 5, 96, 272, 300 |
| BshNI | GGYRCC | 1 cut(s) | 653 |
| BslFI | GGGAC | 3 cut(s) | 353, 508, 565 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 296, 524 |
| BsmFI | GGGAC | 3 cut(s) | 353, 508, 565 |
| BsnI | GGCC | 4 cut(s) | 5, 96, 272, 300 |
| Bsp1286I | GDGCHC | 3 cut(s) | 488, 588, 656 |
| Bsp143I | GATC | 2 cut(s) | 142, 276 |
| BspACI | CCGC | 1 cut(s) | 492 |
| BspANI | GGCC | 4 cut(s) | 5, 96, 272, 300 |
| BspCNI | CTCAG | 1 cut(s) | 185 |
| BspLI | GGNNCC | 1 cut(s) | 655 |
| BspPI | GGATC | 1 cut(s) | 271 |
| BspQI | GCTCTTC | 1 cut(s) | 372 |
| BspT107I | GGYRCC | 1 cut(s) | 653 |
| BsrI | ACTGG | 1 cut(s) | 237 |
| BssECI | CCNNGG | 1 cut(s) | 657 |
| BssMI | GATC | 2 cut(s) | 142, 276 |
| BssNI | GRCGYC | 1 cut(s) | 528 |
| BssT1I | CCWWGG | 1 cut(s) | 657 |
| Bst4CI | ACNGT | 2 cut(s) | 403, 602 |
| Bst6I | CTCTTC | 1 cut(s) | 372 |
| BstACI | GRCGYC | 1 cut(s) | 528 |
| BstDEI | CTNAG | 3 cut(s) | 172, 498, 519 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 522 |
| BstKTI | GATC | 2 cut(s) | 145, 279 |
| BstMBI | GATC | 2 cut(s) | 142, 276 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 464 |
| BstSFI | CTRYAG | 1 cut(s) | 453 |
| BstSLI | GKGCMC | 3 cut(s) | 488, 588, 656 |
| BstV1I | GCAGC | 1 cut(s) | 454 |
| BstV2I | GAAGAC | 2 cut(s) | 275, 314 |
| BsuRI | GGCC | 4 cut(s) | 5, 96, 272, 300 |
| BtsIMutI | CAGTG | 1 cut(s) | 302 |
| Cfr13I | GGNCC | 2 cut(s) | 299, 515 |
| CseI | GACGC | 2 cut(s) | 447, 517 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 205, 240 |
| CviAII | CATG | 2 cut(s) | 28, 157 |
| DdeI | CTNAG | 3 cut(s) | 172, 498, 519 |
| DpnI | GATC | 2 cut(s) | 144, 278 |
| DpnII | GATC | 2 cut(s) | 142, 276 |
| DraI | TTTAAA | 1 cut(s) | 613 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 372 |
| EarI | CTCTTC | 1 cut(s) | 372 |
| Eco130I | CCWWGG | 1 cut(s) | 657 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco57I | CTGAAG | 2 cut(s) | 119, 326 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 522 |
| EcoT14I | CCWWGG | 1 cut(s) | 657 |
| ErhI | CCWWGG | 1 cut(s) | 657 |
| FaeI | CATG | 2 cut(s) | 31, 160 |
| FaqI | GGGAC | 3 cut(s) | 353, 508, 565 |
| FatI | CATG | 2 cut(s) | 27, 156 |
| FauI | CCCGC | 1 cut(s) | 485 |
| Fnu4HI | GCNGC | 1 cut(s) | 468 |
| Fsp4HI | GCNGC | 1 cut(s) | 468 |
| FspBI | CTAG | 4 cut(s) | 140, 219, 291, 462 |
| GluI | GCNGC | 1 cut(s) | 468 |
| GsuI | CTGGAG | 1 cut(s) | 254 |
| HaeIII | GGCC | 4 cut(s) | 5, 96, 272, 300 |
| HgaI | GACGC | 2 cut(s) | 447, 517 |
| Hin1I | GRCGYC | 1 cut(s) | 528 |
| Hin1II | CATG | 2 cut(s) | 31, 160 |
| HincII | GTYRAC | 1 cut(s) | 421 |
| HindII | GTYRAC | 1 cut(s) | 421 |
| HinfI | GANTC | 1 cut(s) | 412 |
| HpaI | GTTAAC | 1 cut(s) | 421 |
| HphI | GGTGA | 5 cut(s) | 24, 52, 239, 491, 637 |
| Hpy166II | GTNNAC | 3 cut(s) | 230, 265, 421 |
| Hpy188I | TCNGA | 2 cut(s) | 175, 250 |
| Hpy8I | GTNNAC | 3 cut(s) | 230, 265, 421 |
| HpyAV | CCTTC | 5 cut(s) | 265, 322, 430, 571, 575 |
| HpyCH4III | ACNGT | 2 cut(s) | 403, 602 |
| HpyCH4V | TGCA | 4 cut(s) | 314, 370, 470, 573 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 464 |
| HpyF3I | CTNAG | 3 cut(s) | 172, 498, 519 |
| Hsp92I | GRCGYC | 1 cut(s) | 528 |
| Hsp92II | CATG | 2 cut(s) | 31, 160 |
| KspAI | GTTAAC | 1 cut(s) | 421 |
| Kzo9I | GATC | 2 cut(s) | 142, 276 |
| LguI | GCTCTTC | 1 cut(s) | 372 |
| LmnI | GCTCC | 1 cut(s) | 187 |
| LpnPI | CCDG | 9 cut(s) | 48, 75, 110, 218, 356, 401, 462, 534, 608 |
| Lsp1109I | GCAGC | 1 cut(s) | 454 |
| LweI | GCATC | 1 cut(s) | 241 |
| MaeI | CTAG | 4 cut(s) | 140, 219, 291, 462 |
| MaeIII | GTNAC | 1 cut(s) | 30 |
| MalI | GATC | 2 cut(s) | 144, 278 |
| MboI | GATC | 2 cut(s) | 142, 276 |
| MboII | GAAGA | 4 cut(s) | 275, 319, 386, 389 |
| MhlI | GDGCHC | 3 cut(s) | 488, 588, 656 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 4 cut(s) | 12, 360, 384, 472 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 5 cut(s) | 36, 181, 297, 475, 643 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 7 cut(s) | 105, 387, 420, 534, 558, 591, 612 |
| MslI | CAYNNNNRTG | 1 cut(s) | 559 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 464 |
| NdeII | GATC | 2 cut(s) | 142, 276 |
| NlaIII | CATG | 2 cut(s) | 31, 160 |
| NlaIV | GGNNCC | 1 cut(s) | 655 |
| NmuCI | GTSAC | 1 cut(s) | 30 |
| PciSI | GCTCTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 1 cut(s) | 412 |
| PflFI | GACNNNGTC | 1 cut(s) | 403 |
| PkrI | GCNGC | 1 cut(s) | 469 |
| PspN4I | GGNNCC | 1 cut(s) | 655 |
| PspPI | GGNCC | 2 cut(s) | 299, 515 |
| PsyI | GACNNNGTC | 1 cut(s) | 403 |
| RseI | CAYNNNNRTG | 1 cut(s) | 559 |
| SapI | GCTCTTC | 1 cut(s) | 372 |
| SaqAI | TTAA | 7 cut(s) | 105, 387, 420, 534, 558, 591, 612 |
| SatI | GCNGC | 1 cut(s) | 468 |
| Sau3AI | GATC | 2 cut(s) | 142, 276 |
| Sau96I | GGNCC | 2 cut(s) | 299, 515 |
| SduI | GDGCHC | 3 cut(s) | 488, 588, 656 |
| SetI | ASST | 7 cut(s) | 37, 64, 150, 173, 354, 384, 454 |
| SfaNI | GCATC | 1 cut(s) | 241 |
| SfcI | CTRYAG | 1 cut(s) | 453 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 559 |
| Sse9I | AATT | 4 cut(s) | 12, 360, 384, 472 |
| SsiI | CCGC | 1 cut(s) | 492 |
| SspMI | CTAG | 4 cut(s) | 140, 219, 291, 462 |
| StyI | CCWWGG | 1 cut(s) | 657 |
| TaaI | ACNGT | 2 cut(s) | 403, 602 |
| TasI | AATT | 4 cut(s) | 12, 360, 384, 472 |
| TfiI | GAWTC | 1 cut(s) | 412 |
| Tru1I | TTAA | 7 cut(s) | 105, 387, 420, 534, 558, 591, 612 |
| Tru9I | TTAA | 7 cut(s) | 105, 387, 420, 534, 558, 591, 612 |
| TscAI | CASTG | 1 cut(s) | 309 |
| TseFI | GTSAC | 1 cut(s) | 30 |
| TseI | GCWGC | 1 cut(s) | 467 |
| Tsp45I | GTSAC | 1 cut(s) | 30 |
| TspDTI | ATGAA | 5 cut(s) | 32, 173, 212, 247, 629 |
| TspGWI | ACGGA | 2 cut(s) | 269, 397 |
| TspRI | CASTG | 1 cut(s) | 309 |
| Tth111I | GACNNNGTC | 1 cut(s) | 403 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 522 |
| XapI | RAATTY | 1 cut(s) | 472 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 34 |
| XspI | CTAG | 4 cut(s) | 140, 219, 291, 462 |