gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 64 - 218 | 2.2e-20 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 231 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 497 |
| Acc65I | GGTACC | 1 cut(s) | 739 |
| AccB1I | GGYRCC | 1 cut(s) | 739 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 451 |
| AclWI | GGATC | 1 cut(s) | 168 |
| AcoI | YGGCCR | 1 cut(s) | 258 |
| AcsI | RAATTY | 3 cut(s) | 356, 416, 673 |
| AcuI | CTGAAG | 3 cut(s) | 36, 195, 231 |
| AfaI | GTAC | 1 cut(s) | 741 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 42, 451 |
| AgsI | TTSAA | 3 cut(s) | 406, 715, 835 |
| AleI | CACNNNNGTG | 1 cut(s) | 668 |
| AluBI | AGCT | 6 cut(s) | 88, 193, 350, 383, 607, 876 |
| AluI | AGCT | 6 cut(s) | 88, 193, 350, 383, 607, 876 |
| Alw21I | GWGCWC | 3 cut(s) | 609, 658, 878 |
| Alw26I | GTCTC | 1 cut(s) | 173 |
| Alw44I | GTGCAC | 1 cut(s) | 654 |
| AlwI | GGATC | 1 cut(s) | 168 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 59 |
| Ama87I | CYCGRG | 1 cut(s) | 510 |
| AoxI | GGCC | 2 cut(s) | 258, 342 |
| ApaLI | GTGCAC | 1 cut(s) | 654 |
| ApeKI | GCWGC | 3 cut(s) | 383, 758, 761 |
| ApoI | RAATTY | 3 cut(s) | 356, 416, 673 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 710 |
| Asp718I | GGTACC | 1 cut(s) | 739 |
| AspS9I | GGNCC | 3 cut(s) | 33, 276, 564 |
| AsuHPI | GGTGA | 2 cut(s) | 61, 389 |
| AvaI | CYCGRG | 1 cut(s) | 510 |
| AvaII | GGWCC | 3 cut(s) | 33, 276, 564 |
| AxyI | CCTNAGG | 1 cut(s) | 73 |
| BaeGI | GKGCMC | 2 cut(s) | 658, 810 |
| BalI | TGGCCA | 1 cut(s) | 260 |
| BanI | GGYRCC | 1 cut(s) | 739 |
| BanII | GRGCYC | 2 cut(s) | 609, 878 |
| BbsI | GAAGAC | 1 cut(s) | 758 |
| Bbv12I | GWGCWC | 3 cut(s) | 609, 658, 878 |
| BbvI | GCAGC | 3 cut(s) | 370, 745, 748 |
| BccI | CCATC | 1 cut(s) | 673 |
| BclI | TGATCA | 1 cut(s) | 846 |
| BcoDI | GTCTC | 1 cut(s) | 173 |
| BfaI | CTAG | 1 cut(s) | 530 |
| BglII | AGATCT | 1 cut(s) | 484 |
| BisI | GCNGC | 3 cut(s) | 384, 759, 762 |
| BlsI | GCNGC | 3 cut(s) | 385, 760, 763 |
| Bme18I | GGWCC | 3 cut(s) | 33, 276, 564 |
| BmeT110I | CYCGRG | 1 cut(s) | 510 |
| BmgT120I | GGNCC | 3 cut(s) | 33, 276, 564 |
| BmiI | GGNNCC | 2 cut(s) | 315, 741 |
| BmrI | ACTGGG | 1 cut(s) | 813 |
| BmsI | GCATC | 2 cut(s) | 496, 586 |
| BmuI | ACTGGG | 1 cut(s) | 813 |
| BpiI | GAAGAC | 1 cut(s) | 758 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 860 |
| BpmI | CTGGAG | 1 cut(s) | 359 |
| Bpu10I | CCTNAGC | 1 cut(s) | 735 |
| BpuEI | CTTGAG | 1 cut(s) | 566 |
| BsaBI | GATNNNNATC | 1 cut(s) | 464 |
| BsaJI | CCNNGG | 1 cut(s) | 879 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 42, 451 |
| Bse1I | ACTGG | 2 cut(s) | 100, 808 |
| Bse21I | CCTNAGG | 1 cut(s) | 73 |
| Bse3DI | GCAATG | 2 cut(s) | 150, 729 |
| Bse8I | GATNNNNATC | 1 cut(s) | 464 |
| BseDI | CCNNGG | 1 cut(s) | 879 |
| BseGI | GGATG | 3 cut(s) | 202, 601, 849 |
| BseJI | GATNNNNATC | 1 cut(s) | 464 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 42, 451 |
| BseMI | GCAATG | 2 cut(s) | 150, 729 |
| BseMII | CTCAG | 4 cut(s) | 51, 493, 551, 738 |
| BseNI | ACTGG | 2 cut(s) | 100, 808 |
| BseRI | GAGGAG | 2 cut(s) | 326, 884 |
| BseSI | GKGCMC | 2 cut(s) | 658, 810 |
| BseXI | GCAGC | 3 cut(s) | 370, 745, 748 |
| BshFI | GGCC | 2 cut(s) | 260, 344 |
| BshNI | GGYRCC | 1 cut(s) | 739 |
| BsiHKAI | GWGCWC | 3 cut(s) | 609, 658, 878 |
| BsiHKCI | CYCGRG | 1 cut(s) | 510 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 42, 451 |
| BsmAI | GTCTC | 1 cut(s) | 173 |
| BsnI | GGCC | 2 cut(s) | 260, 344 |
| BsoBI | CYCGRG | 1 cut(s) | 510 |
| Bsp1286I | GDGCHC | 4 cut(s) | 609, 658, 810, 878 |
| Bsp143I | GATC | 4 cut(s) | 160, 409, 484, 846 |
| BspANI | GGCC | 2 cut(s) | 260, 344 |
| BspCNI | CTCAG | 4 cut(s) | 52, 492, 552, 739 |
| BspLI | GGNNCC | 2 cut(s) | 315, 741 |
| BspPI | GGATC | 1 cut(s) | 168 |
| BspT107I | GGYRCC | 1 cut(s) | 739 |
| BsrDI | GCAATG | 2 cut(s) | 150, 729 |
| BsrI | ACTGG | 2 cut(s) | 100, 808 |
| BssECI | CCNNGG | 1 cut(s) | 879 |
| BssMI | GATC | 4 cut(s) | 160, 409, 484, 846 |
| BssT1I | CCWWGG | 1 cut(s) | 879 |
| Bst4CI | ACNGT | 2 cut(s) | 295, 393 |
| Bst6I | CTCTTC | 1 cut(s) | 207 |
| BstDEI | CTNAG | 6 cut(s) | 60, 73, 479, 560, 735, 747 |
| BstF5I | GGATG | 3 cut(s) | 202, 601, 849 |
| BstKTI | GATC | 4 cut(s) | 163, 412, 487, 849 |
| BstMAI | GTCTC | 1 cut(s) | 173 |
| BstMBI | GATC | 4 cut(s) | 160, 409, 484, 846 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 190, 792 |
| BstNSI | RCATGY | 1 cut(s) | 326 |
| BstSLI | GKGCMC | 2 cut(s) | 658, 810 |
| BstV1I | GCAGC | 3 cut(s) | 370, 745, 748 |
| BstV2I | GAAGAC | 1 cut(s) | 758 |
| BstX2I | RGATCY | 2 cut(s) | 160, 484 |
| BstYI | RGATCY | 2 cut(s) | 160, 484 |
| Bsu36I | CCTNAGG | 1 cut(s) | 73 |
| BsuRI | GGCC | 2 cut(s) | 260, 344 |
| BtsCI | GGATG | 3 cut(s) | 202, 601, 849 |
| BtsI | GCAGTG | 3 cut(s) | 333, 663, 827 |
| BtsIMutI | CAGTG | 7 cut(s) | 171, 207, 333, 427, 663, 744, 827 |
| CaiI | CAGNNNCTG | 1 cut(s) | 59 |
| Cfr13I | GGNCC | 3 cut(s) | 33, 276, 564 |
| Csp6I | GTAC | 1 cut(s) | 740 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 403, 438 |
| CviAII | CATG | 6 cut(s) | 157, 323, 493, 521, 811, 888 |
| CviQI | GTAC | 1 cut(s) | 740 |
| DdeI | CTNAG | 6 cut(s) | 60, 73, 479, 560, 735, 747 |
| DpnI | GATC | 4 cut(s) | 162, 411, 486, 848 |
| DpnII | GATC | 4 cut(s) | 160, 409, 484, 846 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 497 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 497 |
| EaeI | YGGCCR | 1 cut(s) | 258 |
| Eam1104I | CTCTTC | 1 cut(s) | 207 |
| EarI | CTCTTC | 1 cut(s) | 207 |
| Ecl136II | GAGCTC | 2 cut(s) | 607, 876 |
| Eco130I | CCWWGG | 1 cut(s) | 879 |
| Eco24I | GRGCYC | 2 cut(s) | 609, 878 |
| Eco47I | GGWCC | 3 cut(s) | 33, 276, 564 |
| Eco53kI | GAGCTC | 2 cut(s) | 607, 876 |
| Eco57I | CTGAAG | 3 cut(s) | 36, 195, 231 |
| Eco81I | CCTNAGG | 1 cut(s) | 73 |
| Eco88I | CYCGRG | 1 cut(s) | 510 |
| EcoICRI | GAGCTC | 2 cut(s) | 607, 876 |
| EcoT14I | CCWWGG | 1 cut(s) | 879 |
| EcoT38I | GRGCYC | 2 cut(s) | 609, 878 |
| ErhI | CCWWGG | 1 cut(s) | 879 |
| FaeI | CATG | 6 cut(s) | 160, 326, 496, 524, 814, 891 |
| FatI | CATG | 6 cut(s) | 156, 322, 492, 520, 810, 887 |
| FbaI | TGATCA | 1 cut(s) | 846 |
| Fnu4HI | GCNGC | 3 cut(s) | 384, 759, 762 |
| FokI | GGATG | 3 cut(s) | 209, 608, 856 |
| FriOI | GRGCYC | 2 cut(s) | 609, 878 |
| Fsp4HI | GCNGC | 3 cut(s) | 384, 759, 762 |
| FspBI | CTAG | 1 cut(s) | 530 |
| GluI | GCNGC | 3 cut(s) | 384, 759, 762 |
| GsuI | CTGGAG | 1 cut(s) | 359 |
| HaeIII | GGCC | 2 cut(s) | 260, 344 |
| Hin1II | CATG | 6 cut(s) | 160, 326, 496, 524, 814, 891 |
| HinfI | GANTC | 5 cut(s) | 82, 148, 513, 533, 700 |
| HphI | GGTGA | 2 cut(s) | 61, 389 |
| Hpy166II | GTNNAC | 2 cut(s) | 48, 656 |
| Hpy188I | TCNGA | 6 cut(s) | 153, 289, 440, 482, 561, 705 |
| Hpy188III | TCNNGA | 4 cut(s) | 54, 274, 338, 488 |
| Hpy8I | GTNNAC | 2 cut(s) | 48, 656 |
| HpyAV | CCTTC | 2 cut(s) | 640, 821 |
| HpyCH4III | ACNGT | 2 cut(s) | 295, 393 |
| HpyCH4V | TGCA | 5 cut(s) | 326, 386, 656, 764, 795 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 190, 792 |
| HpyF3I | CTNAG | 6 cut(s) | 60, 73, 479, 560, 735, 747 |
| Hsp92II | CATG | 6 cut(s) | 160, 326, 496, 524, 814, 891 |
| KpnI | GGTACC | 1 cut(s) | 743 |
| Ksp22I | TGATCA | 1 cut(s) | 846 |
| Kzo9I | GATC | 4 cut(s) | 160, 409, 484, 846 |
| LmnI | GCTCC | 2 cut(s) | 313, 881 |
| Lsp1109I | GCAGC | 3 cut(s) | 370, 745, 748 |
| LweI | GCATC | 2 cut(s) | 496, 586 |
| MaeI | CTAG | 1 cut(s) | 530 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 4 cut(s) | 162, 411, 486, 848 |
| MboI | GATC | 4 cut(s) | 160, 409, 484, 846 |
| MboII | GAAGA | 6 cut(s) | 130, 188, 212, 224, 763, 826 |
| MflI | RGATCY | 2 cut(s) | 160, 484 |
| MhlI | GDGCHC | 4 cut(s) | 609, 658, 810, 878 |
| MlsI | TGGCCA | 1 cut(s) | 260 |
| MluCI | AATT | 4 cut(s) | 103, 356, 416, 673 |
| MluNI | TGGCCA | 1 cut(s) | 260 |
| MlyI | GAGTC | 1 cut(s) | 522 |
| MmeI | TCCRAC | 1 cut(s) | 80 |
| MnlI | CCTC | 8 cut(s) | 55, 208, 293, 304, 334, 555, 636, 862 |
| Mox20I | TGGCCA | 1 cut(s) | 260 |
| MroXI | GAANNNNTTC | 1 cut(s) | 710 |
| MscI | TGGCCA | 1 cut(s) | 260 |
| MseI | TTAA | 2 cut(s) | 780, 861 |
| MslI | CAYNNNNRTG | 1 cut(s) | 668 |
| Msp20I | TGGCCA | 1 cut(s) | 260 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 190, 792 |
| NdeII | GATC | 4 cut(s) | 160, 409, 484, 846 |
| NlaIII | CATG | 6 cut(s) | 160, 326, 496, 524, 814, 891 |
| NlaIV | GGNNCC | 2 cut(s) | 315, 741 |
| NmuCI | GTSAC | 1 cut(s) | 67 |
| NspI | RCATGY | 1 cut(s) | 326 |
| OliI | CACNNNNGTG | 1 cut(s) | 668 |
| PdmI | GAANNNNTTC | 1 cut(s) | 710 |
| PfeI | GAWTC | 4 cut(s) | 82, 148, 533, 700 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 451 |
| PkrI | GCNGC | 3 cut(s) | 385, 760, 763 |
| PleI | GAGTC | 1 cut(s) | 521 |
| PpsI | GAGTC | 1 cut(s) | 521 |
| PsiI | TTATAA | 1 cut(s) | 231 |
| Psp124BI | GAGCTC | 2 cut(s) | 609, 878 |
| PspN4I | GGNNCC | 2 cut(s) | 315, 741 |
| PspPI | GGNCC | 3 cut(s) | 33, 276, 564 |
| PstNI | CAGNNNCTG | 1 cut(s) | 59 |
| PsuI | RGATCY | 2 cut(s) | 160, 484 |
| RsaI | GTAC | 1 cut(s) | 741 |
| RsaNI | GTAC | 1 cut(s) | 740 |
| RseI | CAYNNNNRTG | 1 cut(s) | 668 |
| SacI | GAGCTC | 2 cut(s) | 609, 878 |
| SaqAI | TTAA | 2 cut(s) | 780, 861 |
| SatI | GCNGC | 3 cut(s) | 384, 759, 762 |
| Sau3AI | GATC | 4 cut(s) | 160, 409, 484, 846 |
| Sau96I | GGNCC | 3 cut(s) | 33, 276, 564 |
| SchI | GAGTC | 1 cut(s) | 522 |
| SduI | GDGCHC | 4 cut(s) | 609, 658, 810, 878 |
| SfaNI | GCATC | 2 cut(s) | 496, 586 |
| SinI | GGWCC | 3 cut(s) | 33, 276, 564 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 668 |
| SmlI | CTYRAG | 1 cut(s) | 581 |
| SmoI | CTYRAG | 1 cut(s) | 581 |
| Sse9I | AATT | 4 cut(s) | 103, 356, 416, 673 |
| SspMI | CTAG | 1 cut(s) | 530 |
| SstI | GAGCTC | 2 cut(s) | 609, 878 |
| StyI | CCWWGG | 1 cut(s) | 879 |
| TaaI | ACNGT | 2 cut(s) | 295, 393 |
| TaqI | TCGA | 1 cut(s) | 129 |
| TasI | AATT | 4 cut(s) | 103, 356, 416, 673 |
| TfiI | GAWTC | 4 cut(s) | 82, 148, 533, 700 |
| Tru1I | TTAA | 2 cut(s) | 780, 861 |
| Tru9I | TTAA | 2 cut(s) | 780, 861 |
| TscAI | CASTG | 7 cut(s) | 178, 214, 333, 427, 670, 751, 827 |
| TseFI | GTSAC | 1 cut(s) | 67 |
| TseI | GCWGC | 3 cut(s) | 383, 758, 761 |
| Tsp45I | GTSAC | 1 cut(s) | 67 |
| TspDTI | ATGAA | 5 cut(s) | 161, 213, 509, 642, 827 |
| TspRI | CASTG | 7 cut(s) | 178, 214, 333, 427, 670, 751, 827 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 451 |
| VneI | GTGCAC | 1 cut(s) | 654 |
| VpaK11BI | GGWCC | 3 cut(s) | 33, 276, 564 |
| XapI | RAATTY | 3 cut(s) | 356, 416, 673 |
| XceI | RCATGY | 1 cut(s) | 326 |
| XmnI | GAANNNNTTC | 1 cut(s) | 710 |
| XspI | CTAG | 1 cut(s) | 530 |