gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 24 - 104 | 5.7e-06 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 29 |
| AciI | CCGC | 1 cut(s) | 266 |
| AcuI | CTGAAG | 1 cut(s) | 39 |
| AgsI | TTSAA | 3 cut(s) | 68, 197, 259 |
| AluBI | AGCT | 4 cut(s) | 53, 77, 205, 250 |
| AluI | AGCT | 4 cut(s) | 53, 77, 205, 250 |
| Alw21I | GWGCWC | 1 cut(s) | 174 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 263, 295 |
| AsuNHI | GCTAGC | 1 cut(s) | 205 |
| BanI | GGYRCC | 1 cut(s) | 29 |
| Bbv12I | GWGCWC | 1 cut(s) | 174 |
| BfaI | CTAG | 2 cut(s) | 111, 206 |
| BmiI | GGNNCC | 1 cut(s) | 31 |
| BmtI | GCTAGC | 1 cut(s) | 209 |
| Bpu10I | CCTNAGC | 1 cut(s) | 49 |
| Bse1I | ACTGG | 1 cut(s) | 135 |
| BseMII | CTCAG | 3 cut(s) | 30, 69, 323 |
| BseNI | ACTGG | 1 cut(s) | 135 |
| BshNI | GGYRCC | 1 cut(s) | 29 |
| BsiHKAI | GWGCWC | 1 cut(s) | 174 |
| Bsp1286I | GDGCHC | 1 cut(s) | 174 |
| BspACI | CCGC | 1 cut(s) | 266 |
| BspCNI | CTCAG | 3 cut(s) | 31, 70, 322 |
| BspLI | GGNNCC | 1 cut(s) | 31 |
| BspOI | GCTAGC | 1 cut(s) | 209 |
| BspT107I | GGYRCC | 1 cut(s) | 29 |
| BsrI | ACTGG | 1 cut(s) | 135 |
| Bst4CI | ACNGT | 1 cut(s) | 22 |
| BstC8I | GCNNGC | 2 cut(s) | 207, 252 |
| BstDEI | CTNAG | 4 cut(s) | 39, 49, 78, 309 |
| BtsIMutI | CAGTG | 1 cut(s) | 27 |
| Cac8I | GCNNGC | 2 cut(s) | 207, 252 |
| CviAII | CATG | 3 cut(s) | 151, 163, 220 |
| CviJI | RGCY | 7 cut(s) | 47, 53, 77, 110, 205, 209, 250 |
| CviKI_1 | RGCY | 7 cut(s) | 47, 53, 77, 110, 205, 209, 250 |
| DdeI | CTNAG | 4 cut(s) | 39, 49, 78, 309 |
| Eco57I | CTGAAG | 1 cut(s) | 39 |
| FaeI | CATG | 3 cut(s) | 154, 166, 223 |
| FaiI | YATR | 7 cut(s) | 74, 116, 140, 152, 164, 179, 221 |
| FatI | CATG | 3 cut(s) | 150, 162, 219 |
| FauI | CCCGC | 1 cut(s) | 273 |
| FspBI | CTAG | 2 cut(s) | 111, 206 |
| Hin1II | CATG | 3 cut(s) | 154, 166, 223 |
| HinfI | GANTC | 2 cut(s) | 154, 286 |
| Hpy166II | GTNNAC | 1 cut(s) | 87 |
| Hpy188I | TCNGA | 5 cut(s) | 16, 58, 159, 291, 312 |
| Hpy188III | TCNNGA | 1 cut(s) | 38 |
| Hpy8I | GTNNAC | 1 cut(s) | 87 |
| HpyAV | CCTTC | 2 cut(s) | 265, 307 |
| HpyCH4III | ACNGT | 1 cut(s) | 22 |
| HpyF3I | CTNAG | 4 cut(s) | 39, 49, 78, 309 |
| Hsp92II | CATG | 3 cut(s) | 154, 166, 223 |
| LpnPI | CCDG | 3 cut(s) | 51, 148, 282 |
| MaeI | CTAG | 2 cut(s) | 111, 206 |
| MboII | GAAGA | 1 cut(s) | 56 |
| MhlI | GDGCHC | 1 cut(s) | 174 |
| MlyI | GAGTC | 1 cut(s) | 295 |
| MnlI | CCTC | 3 cut(s) | 18, 100, 226 |
| NheI | GCTAGC | 1 cut(s) | 205 |
| NlaIII | CATG | 3 cut(s) | 154, 166, 223 |
| NlaIV | GGNNCC | 1 cut(s) | 31 |
| PfeI | GAWTC | 1 cut(s) | 154 |
| PleI | GAGTC | 1 cut(s) | 294 |
| PpsI | GAGTC | 1 cut(s) | 294 |
| PspN4I | GGNNCC | 1 cut(s) | 31 |
| SchI | GAGTC | 1 cut(s) | 295 |
| SduI | GDGCHC | 1 cut(s) | 174 |
| SetI | ASST | 8 cut(s) | 55, 79, 177, 202, 207, 216, 252, 302 |
| SsiI | CCGC | 1 cut(s) | 266 |
| SspMI | CTAG | 2 cut(s) | 111, 206 |
| TaaI | ACNGT | 1 cut(s) | 22 |
| TfiI | GAWTC | 1 cut(s) | 154 |
| TscAI | CASTG | 1 cut(s) | 27 |
| TspDTI | ATGAA | 4 cut(s) | 17, 155, 167, 203 |
| TspRI | CASTG | 1 cut(s) | 27 |
| XspI | CTAG | 2 cut(s) | 111, 206 |