gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 2 - 133 | 2.2e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 242 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 196 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 2 cut(s) | 101, 161 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 196 |
| AgsI | TTSAA | 3 cut(s) | 106, 125, 151 |
| AjnI | CCWGG | 1 cut(s) | 273 |
| AleI | CACNNNNGTG | 1 cut(s) | 412 |
| AluBI | AGCT | 3 cut(s) | 95, 128, 352 |
| AluI | AGCT | 3 cut(s) | 95, 128, 352 |
| Alw21I | GWGCWC | 2 cut(s) | 354, 403 |
| Alw44I | GTGCAC | 1 cut(s) | 399 |
| AoxI | GGCC | 2 cut(s) | 3, 87 |
| ApaLI | GTGCAC | 1 cut(s) | 399 |
| ApoI | RAATTY | 2 cut(s) | 101, 161 |
| AspS9I | GGNCC | 2 cut(s) | 21, 309 |
| AvaII | GGWCC | 2 cut(s) | 21, 309 |
| BaeGI | GKGCMC | 1 cut(s) | 403 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 354 |
| Bbv12I | GWGCWC | 2 cut(s) | 354, 403 |
| BccI | CCATC | 1 cut(s) | 320 |
| BciT130I | CCWGG | 1 cut(s) | 275 |
| BglII | AGATCT | 1 cut(s) | 229 |
| Bme1390I | CCNGG | 1 cut(s) | 275 |
| Bme18I | GGWCC | 2 cut(s) | 21, 309 |
| BmgT120I | GGNCC | 2 cut(s) | 21, 309 |
| BmiI | GGNNCC | 1 cut(s) | 60 |
| BmrFI | CCNGG | 1 cut(s) | 275 |
| BmsI | GCATC | 2 cut(s) | 241, 331 |
| BpmI | CTGGAG | 1 cut(s) | 104 |
| BpuEI | CTTGAG | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 1 cut(s) | 273 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 196 |
| BseBI | CCWGG | 1 cut(s) | 275 |
| BseDI | CCNNGG | 1 cut(s) | 273 |
| BseGI | GGATG | 2 cut(s) | 346, 390 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BseMII | CTCAG | 2 cut(s) | 238, 296 |
| BseRI | GAGGAG | 1 cut(s) | 71 |
| BseSI | GKGCMC | 1 cut(s) | 403 |
| BshFI | GGCC | 2 cut(s) | 5, 89 |
| BsiHKAI | GWGCWC | 2 cut(s) | 354, 403 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BsnI | GGCC | 2 cut(s) | 5, 89 |
| Bsp1286I | GDGCHC | 2 cut(s) | 354, 403 |
| Bsp143I | GATC | 2 cut(s) | 154, 229 |
| BspANI | GGCC | 2 cut(s) | 5, 89 |
| BspCNI | CTCAG | 2 cut(s) | 237, 297 |
| BspLI | GGNNCC | 1 cut(s) | 60 |
| BssECI | CCNNGG | 1 cut(s) | 273 |
| BssMI | GATC | 2 cut(s) | 154, 229 |
| Bst2UI | CCWGG | 1 cut(s) | 275 |
| Bst4CI | ACNGT | 4 cut(s) | 40, 138, 299, 414 |
| BstDEI | CTNAG | 2 cut(s) | 224, 305 |
| BstF5I | GGATG | 2 cut(s) | 346, 390 |
| BstKTI | GATC | 2 cut(s) | 157, 232 |
| BstMBI | GATC | 2 cut(s) | 154, 229 |
| BstNI | CCWGG | 1 cut(s) | 275 |
| BstNSI | RCATGY | 1 cut(s) | 71 |
| BstSCI | CCNGG | 1 cut(s) | 273 |
| BstSLI | GKGCMC | 1 cut(s) | 403 |
| BstX2I | RGATCY | 1 cut(s) | 229 |
| BstYI | RGATCY | 1 cut(s) | 229 |
| BsuRI | GGCC | 2 cut(s) | 5, 89 |
| BtsCI | GGATG | 2 cut(s) | 346, 390 |
| BtsIMutI | CAGTG | 1 cut(s) | 172 |
| Cfr13I | GGNCC | 2 cut(s) | 21, 309 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 94, 129, 148, 183 |
| CviAII | CATG | 3 cut(s) | 68, 238, 266 |
| CviJI | RGCY | 8 cut(s) | 5, 48, 61, 89, 95, 128, 272, 352 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 48, 61, 89, 95, 128, 272, 352 |
| DdeI | CTNAG | 2 cut(s) | 224, 305 |
| DpnI | GATC | 2 cut(s) | 156, 231 |
| DpnII | GATC | 2 cut(s) | 154, 229 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 242 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 242 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Ecl136II | GAGCTC | 1 cut(s) | 352 |
| Eco24I | GRGCYC | 1 cut(s) | 354 |
| Eco47I | GGWCC | 2 cut(s) | 21, 309 |
| Eco53kI | GAGCTC | 1 cut(s) | 352 |
| EcoICRI | GAGCTC | 1 cut(s) | 352 |
| EcoRII | CCWGG | 1 cut(s) | 273 |
| EcoT38I | GRGCYC | 1 cut(s) | 354 |
| FaeI | CATG | 3 cut(s) | 71, 241, 269 |
| FaiI | YATR | 5 cut(s) | 69, 92, 197, 239, 267 |
| FatI | CATG | 3 cut(s) | 67, 237, 265 |
| FokI | GGATG | 2 cut(s) | 353, 397 |
| FriOI | GRGCYC | 1 cut(s) | 354 |
| GsuI | CTGGAG | 1 cut(s) | 104 |
| HaeIII | GGCC | 2 cut(s) | 5, 89 |
| Hin1II | CATG | 3 cut(s) | 71, 241, 269 |
| HinfI | GANTC | 1 cut(s) | 278 |
| Hpy166II | GTNNAC | 1 cut(s) | 401 |
| Hpy188I | TCNGA | 4 cut(s) | 34, 185, 227, 306 |
| Hpy188III | TCNNGA | 3 cut(s) | 19, 83, 233 |
| Hpy8I | GTNNAC | 1 cut(s) | 401 |
| HpyAV | CCTTC | 1 cut(s) | 385 |
| HpyCH4III | ACNGT | 4 cut(s) | 40, 138, 299, 414 |
| HpyCH4V | TGCA | 2 cut(s) | 71, 401 |
| HpyF3I | CTNAG | 2 cut(s) | 224, 305 |
| Hsp92II | CATG | 3 cut(s) | 71, 241, 269 |
| Kzo9I | GATC | 2 cut(s) | 154, 229 |
| LmnI | GCTCC | 1 cut(s) | 58 |
| LpnPI | CCDG | 7 cut(s) | 4, 68, 75, 218, 260, 287, 362 |
| LweI | GCATC | 2 cut(s) | 241, 331 |
| MalI | GATC | 2 cut(s) | 156, 231 |
| MboI | GATC | 2 cut(s) | 154, 229 |
| MflI | RGATCY | 1 cut(s) | 229 |
| MhlI | GDGCHC | 2 cut(s) | 354, 403 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 101, 161 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 6 cut(s) | 38, 49, 67, 79, 300, 381 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 213 |
| MslI | CAYNNNNRTG | 1 cut(s) | 412 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspR9I | CCNGG | 1 cut(s) | 275 |
| MvaI | CCWGG | 1 cut(s) | 275 |
| NdeII | GATC | 2 cut(s) | 154, 229 |
| NlaIII | CATG | 3 cut(s) | 71, 241, 269 |
| NlaIV | GGNNCC | 1 cut(s) | 60 |
| NspI | RCATGY | 1 cut(s) | 71 |
| OliI | CACNNNNGTG | 1 cut(s) | 412 |
| PfeI | GAWTC | 1 cut(s) | 278 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 196 |
| Psp124BI | GAGCTC | 1 cut(s) | 354 |
| Psp6I | CCWGG | 1 cut(s) | 273 |
| PspGI | CCWGG | 1 cut(s) | 273 |
| PspN4I | GGNNCC | 1 cut(s) | 60 |
| PspPI | GGNCC | 2 cut(s) | 21, 309 |
| PsuI | RGATCY | 1 cut(s) | 229 |
| RseI | CAYNNNNRTG | 1 cut(s) | 412 |
| SacI | GAGCTC | 1 cut(s) | 354 |
| SaqAI | TTAA | 1 cut(s) | 213 |
| Sau3AI | GATC | 2 cut(s) | 154, 229 |
| Sau96I | GGNCC | 2 cut(s) | 21, 309 |
| ScrFI | CCNGG | 1 cut(s) | 275 |
| SduI | GDGCHC | 2 cut(s) | 354, 403 |
| SetI | ASST | 4 cut(s) | 97, 130, 149, 354 |
| SfaNI | GCATC | 2 cut(s) | 241, 331 |
| SinI | GGWCC | 2 cut(s) | 21, 309 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 412 |
| SmlI | CTYRAG | 1 cut(s) | 326 |
| SmoI | CTYRAG | 1 cut(s) | 326 |
| Sse9I | AATT | 2 cut(s) | 101, 161 |
| SstI | GAGCTC | 1 cut(s) | 354 |
| StyD4I | CCNGG | 1 cut(s) | 273 |
| TaaI | ACNGT | 4 cut(s) | 40, 138, 299, 414 |
| TasI | AATT | 2 cut(s) | 101, 161 |
| TfiI | GAWTC | 1 cut(s) | 278 |
| Tru1I | TTAA | 1 cut(s) | 213 |
| Tru9I | TTAA | 1 cut(s) | 213 |
| TscAI | CASTG | 1 cut(s) | 172 |
| TspDTI | ATGAA | 2 cut(s) | 254, 387 |
| TspRI | CASTG | 1 cut(s) | 172 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 196 |
| VneI | GTGCAC | 1 cut(s) | 399 |
| VpaK11BI | GGWCC | 2 cut(s) | 21, 309 |
| XapI | RAATTY | 2 cut(s) | 101, 161 |
| XceI | RCATGY | 1 cut(s) | 71 |