gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 35 - 188 | 3.6e-20 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 144 |
| Acc36I | ACCTGC | 1 cut(s) | 676 |
| AccB1I | GGYRCC | 1 cut(s) | 800 |
| AclWI | GGATC | 2 cut(s) | 81, 99 |
| AcsI | RAATTY | 1 cut(s) | 44 |
| AcuI | CTGAAG | 1 cut(s) | 312 |
| AfaI | GTAC | 2 cut(s) | 121, 570 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 88, 406 |
| AflII | CTTAAG | 1 cut(s) | 626 |
| AgsI | TTSAA | 1 cut(s) | 319 |
| AluBI | AGCT | 6 cut(s) | 299, 370, 520, 677, 683, 761 |
| AluI | AGCT | 6 cut(s) | 299, 370, 520, 677, 683, 761 |
| Alw21I | GWGCWC | 2 cut(s) | 194, 360 |
| Alw26I | GTCTC | 2 cut(s) | 390, 491 |
| Alw44I | GTGCAC | 1 cut(s) | 190 |
| AlwI | GGATC | 2 cut(s) | 81, 99 |
| Ama87I | CYCGRG | 1 cut(s) | 230 |
| ApaLI | GTGCAC | 1 cut(s) | 190 |
| ApeKI | GCWGC | 3 cut(s) | 159, 296, 367 |
| ApoI | RAATTY | 1 cut(s) | 44 |
| AsuHPI | GGTGA | 1 cut(s) | 790 |
| AvaI | CYCGRG | 1 cut(s) | 230 |
| BaeGI | GKGCMC | 3 cut(s) | 194, 732, 803 |
| BanI | GGYRCC | 1 cut(s) | 800 |
| BanII | GRGCYC | 1 cut(s) | 231 |
| BbsI | GAAGAC | 1 cut(s) | 644 |
| Bbv12I | GWGCWC | 2 cut(s) | 194, 360 |
| BbvI | GCAGC | 3 cut(s) | 171, 308, 379 |
| BccI | CCATC | 1 cut(s) | 653 |
| BclI | TGATCA | 1 cut(s) | 768 |
| BcoDI | GTCTC | 2 cut(s) | 390, 491 |
| BfaI | CTAG | 6 cut(s) | 107, 300, 309, 387, 401, 678 |
| BfmI | CTRYAG | 5 cut(s) | 219, 463, 579, 669, 745 |
| BfrI | CTTAAG | 1 cut(s) | 626 |
| BfuAI | ACCTGC | 1 cut(s) | 676 |
| BisI | GCNGC | 3 cut(s) | 160, 297, 368 |
| BlsI | GCNGC | 3 cut(s) | 161, 298, 369 |
| BmeT110I | CYCGRG | 1 cut(s) | 230 |
| BmiI | GGNNCC | 3 cut(s) | 228, 509, 802 |
| BmrI | ACTGGG | 1 cut(s) | 669 |
| BmsI | GCATC | 1 cut(s) | 70 |
| BmuI | ACTGGG | 1 cut(s) | 669 |
| BpiI | GAAGAC | 1 cut(s) | 644 |
| BsaI | GGTCTC | 2 cut(s) | 390, 491 |
| BsaJI | CCNNGG | 2 cut(s) | 240, 804 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 218, 248 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 88, 406 |
| Bse1I | ACTGG | 1 cut(s) | 664 |
| BseDI | CCNNGG | 2 cut(s) | 240, 804 |
| BseGI | GGATG | 2 cut(s) | 544, 771 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 88, 406 |
| BseMII | CTCAG | 2 cut(s) | 317, 464 |
| BseNI | ACTGG | 1 cut(s) | 664 |
| BseRI | GAGGAG | 2 cut(s) | 557, 809 |
| BseSI | GKGCMC | 3 cut(s) | 194, 732, 803 |
| BseXI | GCAGC | 3 cut(s) | 171, 308, 379 |
| BshNI | GGYRCC | 1 cut(s) | 800 |
| BsiHKAI | GWGCWC | 2 cut(s) | 194, 360 |
| BsiHKCI | CYCGRG | 1 cut(s) | 230 |
| BslFI | GGGAC | 1 cut(s) | 755 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 88, 406 |
| BsmAI | GTCTC | 2 cut(s) | 390, 491 |
| BsmFI | GGGAC | 1 cut(s) | 755 |
| Bso31I | GGTCTC | 2 cut(s) | 390, 491 |
| BsoBI | CYCGRG | 1 cut(s) | 230 |
| Bsp1286I | GDGCHC | 5 cut(s) | 194, 231, 360, 732, 803 |
| Bsp143I | GATC | 4 cut(s) | 73, 91, 528, 768 |
| Bsp19I | CCATGG | 1 cut(s) | 240 |
| BspCNI | CTCAG | 2 cut(s) | 318, 465 |
| BspLI | GGNNCC | 3 cut(s) | 228, 509, 802 |
| BspMAI | CTGCAG | 2 cut(s) | 673, 749 |
| BspMI | ACCTGC | 1 cut(s) | 676 |
| BspPI | GGATC | 2 cut(s) | 81, 99 |
| BspT107I | GGYRCC | 1 cut(s) | 800 |
| BspTI | CTTAAG | 1 cut(s) | 626 |
| BspTNI | GGTCTC | 2 cut(s) | 390, 491 |
| BsrI | ACTGG | 1 cut(s) | 664 |
| BssECI | CCNNGG | 2 cut(s) | 240, 804 |
| BssMI | GATC | 4 cut(s) | 73, 91, 528, 768 |
| BssT1I | CCWWGG | 2 cut(s) | 240, 804 |
| Bst4CI | ACNGT | 2 cut(s) | 208, 583 |
| Bst6I | CTCTTC | 1 cut(s) | 731 |
| BstAFI | CTTAAG | 1 cut(s) | 626 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 364 |
| BstDEI | CTNAG | 5 cut(s) | 326, 392, 473, 493, 633 |
| BstDSI | CCRYGG | 1 cut(s) | 240 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 86 |
| BstF5I | GGATG | 2 cut(s) | 544, 771 |
| BstKTI | GATC | 4 cut(s) | 76, 94, 531, 771 |
| BstMAI | GTCTC | 2 cut(s) | 390, 491 |
| BstMBI | GATC | 4 cut(s) | 73, 91, 528, 768 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 296, 364 |
| BstNSI | RCATGY | 1 cut(s) | 437 |
| BstSFI | CTRYAG | 5 cut(s) | 219, 463, 579, 669, 745 |
| BstSLI | GKGCMC | 3 cut(s) | 194, 732, 803 |
| BstV1I | GCAGC | 3 cut(s) | 171, 308, 379 |
| BstV2I | GAAGAC | 1 cut(s) | 644 |
| BstX2I | RGATCY | 1 cut(s) | 73 |
| BstYI | RGATCY | 1 cut(s) | 73 |
| BtgI | CCRYGG | 1 cut(s) | 240 |
| BtsCI | GGATG | 2 cut(s) | 544, 771 |
| BtsI | GCAGTG | 2 cut(s) | 352, 754 |
| BtsIMutI | CAGTG | 3 cut(s) | 213, 352, 754 |
| BveI | ACCTGC | 1 cut(s) | 676 |
| Csp6I | GTAC | 2 cut(s) | 120, 569 |
| CviAII | CATG | 6 cut(s) | 58, 70, 241, 406, 434, 733 |
| CviQI | GTAC | 2 cut(s) | 120, 569 |
| DdeI | CTNAG | 5 cut(s) | 326, 392, 473, 493, 633 |
| DpnI | GATC | 4 cut(s) | 75, 93, 530, 770 |
| DpnII | GATC | 4 cut(s) | 73, 91, 528, 768 |
| DraI | TTTAAA | 1 cut(s) | 757 |
| Eam1104I | CTCTTC | 1 cut(s) | 731 |
| EarI | CTCTTC | 1 cut(s) | 731 |
| Eco130I | CCWWGG | 2 cut(s) | 240, 804 |
| Eco24I | GRGCYC | 1 cut(s) | 231 |
| Eco31I | GGTCTC | 2 cut(s) | 390, 491 |
| Eco57I | CTGAAG | 1 cut(s) | 312 |
| Eco88I | CYCGRG | 1 cut(s) | 230 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 86 |
| EcoT14I | CCWWGG | 2 cut(s) | 240, 804 |
| EcoT22I | ATGCAT | 1 cut(s) | 63 |
| EcoT38I | GRGCYC | 1 cut(s) | 231 |
| ErhI | CCWWGG | 2 cut(s) | 240, 804 |
| FaeI | CATG | 6 cut(s) | 61, 73, 244, 409, 437, 736 |
| FaqI | GGGAC | 1 cut(s) | 755 |
| FatI | CATG | 6 cut(s) | 57, 69, 240, 405, 433, 732 |
| FbaI | TGATCA | 1 cut(s) | 768 |
| Fnu4HI | GCNGC | 3 cut(s) | 160, 297, 368 |
| FokI | GGATG | 2 cut(s) | 551, 778 |
| FriOI | GRGCYC | 1 cut(s) | 231 |
| Fsp4HI | GCNGC | 3 cut(s) | 160, 297, 368 |
| FspBI | CTAG | 6 cut(s) | 107, 300, 309, 387, 401, 678 |
| GluI | GCNGC | 3 cut(s) | 160, 297, 368 |
| Hin1II | CATG | 6 cut(s) | 61, 73, 244, 409, 437, 736 |
| HindIII | AAGCTT | 1 cut(s) | 759 |
| HinfI | GANTC | 1 cut(s) | 110 |
| HphI | GGTGA | 1 cut(s) | 790 |
| Hpy166II | GTNNAC | 1 cut(s) | 192 |
| Hpy188I | TCNGA | 3 cut(s) | 103, 115, 202 |
| Hpy188III | TCNNGA | 2 cut(s) | 251, 526 |
| Hpy8I | GTNNAC | 1 cut(s) | 192 |
| HpyAV | CCTTC | 2 cut(s) | 108, 334 |
| HpyCH4III | ACNGT | 2 cut(s) | 208, 583 |
| HpyCH4V | TGCA | 7 cut(s) | 61, 192, 263, 367, 433, 671, 747 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 296, 364 |
| HpyF3I | CTNAG | 5 cut(s) | 326, 392, 473, 493, 633 |
| Hsp92II | CATG | 6 cut(s) | 61, 73, 244, 409, 437, 736 |
| Ksp22I | TGATCA | 1 cut(s) | 768 |
| Kzo9I | GATC | 4 cut(s) | 73, 91, 528, 768 |
| LmnI | GCTCC | 2 cut(s) | 226, 355 |
| Lsp1109I | GCAGC | 3 cut(s) | 171, 308, 379 |
| LweI | GCATC | 1 cut(s) | 70 |
| MaeI | CTAG | 6 cut(s) | 107, 300, 309, 387, 401, 678 |
| MaeIII | GTNAC | 2 cut(s) | 281, 655 |
| MalI | GATC | 4 cut(s) | 75, 93, 530, 770 |
| MboI | GATC | 4 cut(s) | 73, 91, 528, 768 |
| MboII | GAAGA | 3 cut(s) | 266, 649, 748 |
| MflI | RGATCY | 1 cut(s) | 73 |
| MhlI | GDGCHC | 5 cut(s) | 194, 231, 360, 732, 803 |
| MluCI | AATT | 4 cut(s) | 44, 258, 372, 552 |
| Mph1103I | ATGCAT | 1 cut(s) | 63 |
| MseI | TTAA | 8 cut(s) | 6, 381, 414, 555, 585, 627, 696, 756 |
| MspCI | CTTAAG | 1 cut(s) | 626 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 296, 364 |
| NcoI | CCATGG | 1 cut(s) | 240 |
| NdeII | GATC | 4 cut(s) | 73, 91, 528, 768 |
| NlaIII | CATG | 6 cut(s) | 61, 73, 244, 409, 437, 736 |
| NlaIV | GGNNCC | 3 cut(s) | 228, 509, 802 |
| NmuCI | GTSAC | 1 cut(s) | 281 |
| NsiI | ATGCAT | 1 cut(s) | 63 |
| NspI | RCATGY | 1 cut(s) | 437 |
| PfeI | GAWTC | 1 cut(s) | 110 |
| PkrI | GCNGC | 3 cut(s) | 161, 298, 369 |
| PsiI | TTATAA | 1 cut(s) | 144 |
| PspN4I | GGNNCC | 3 cut(s) | 228, 509, 802 |
| PstI | CTGCAG | 2 cut(s) | 673, 749 |
| PsuI | RGATCY | 1 cut(s) | 73 |
| RsaI | GTAC | 2 cut(s) | 121, 570 |
| RsaNI | GTAC | 2 cut(s) | 120, 569 |
| SaqAI | TTAA | 8 cut(s) | 6, 381, 414, 555, 585, 627, 696, 756 |
| SatI | GCNGC | 3 cut(s) | 160, 297, 368 |
| Sau3AI | GATC | 4 cut(s) | 73, 91, 528, 768 |
| SduI | GDGCHC | 5 cut(s) | 194, 231, 360, 732, 803 |
| SfaNI | GCATC | 1 cut(s) | 70 |
| SfcI | CTRYAG | 5 cut(s) | 219, 463, 579, 669, 745 |
| SmlI | CTYRAG | 1 cut(s) | 626 |
| SmoI | CTYRAG | 1 cut(s) | 626 |
| Sse9I | AATT | 4 cut(s) | 44, 258, 372, 552 |
| SspMI | CTAG | 6 cut(s) | 107, 300, 309, 387, 401, 678 |
| StyI | CCWWGG | 2 cut(s) | 240, 804 |
| TaaI | ACNGT | 2 cut(s) | 208, 583 |
| TaqI | TCGA | 1 cut(s) | 527 |
| TasI | AATT | 4 cut(s) | 44, 258, 372, 552 |
| TfiI | GAWTC | 1 cut(s) | 110 |
| Tru1I | TTAA | 8 cut(s) | 6, 381, 414, 555, 585, 627, 696, 756 |
| Tru9I | TTAA | 8 cut(s) | 6, 381, 414, 555, 585, 627, 696, 756 |
| TscAI | CASTG | 3 cut(s) | 213, 352, 754 |
| TseFI | GTSAC | 1 cut(s) | 281 |
| TseI | GCWGC | 3 cut(s) | 159, 296, 367 |
| Tsp45I | GTSAC | 1 cut(s) | 281 |
| TspDTI | ATGAA | 5 cut(s) | 336, 434, 435, 471, 749 |
| TspRI | CASTG | 3 cut(s) | 213, 352, 754 |
| Vha464I | CTTAAG | 1 cut(s) | 626 |
| VneI | GTGCAC | 1 cut(s) | 190 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 86 |
| XapI | RAATTY | 1 cut(s) | 44 |
| XceI | RCATGY | 1 cut(s) | 437 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 247 |
| XspI | CTAG | 6 cut(s) | 107, 300, 309, 387, 401, 678 |
| Zsp2I | ATGCAT | 1 cut(s) | 63 |