Belongs to the GRAS family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 4 - 148 | 5.1e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 443 |
| AcsI | RAATTY | 1 cut(s) | 344 |
| AcuI | CTGAAG | 1 cut(s) | 269 |
| AfaI | GTAC | 1 cut(s) | 131 |
| AflII | CTTAAG | 1 cut(s) | 356 |
| AgsI | TTSAA | 1 cut(s) | 344 |
| AluBI | AGCT | 9 cut(s) | 23, 61, 122, 146, 199, 269, 274, 355, 403 |
| AluI | AGCT | 9 cut(s) | 23, 61, 122, 146, 199, 269, 274, 355, 403 |
| Alw26I | GTCTC | 1 cut(s) | 170 |
| AlwI | GGATC | 1 cut(s) | 443 |
| AoxI | GGCC | 2 cut(s) | 534, 600 |
| ApeKI | GCWGC | 3 cut(s) | 20, 199, 584 |
| ApoI | RAATTY | 1 cut(s) | 344 |
| AspA2I | CCTAGG | 1 cut(s) | 517 |
| AsuHPI | GGTGA | 3 cut(s) | 49, 446, 454 |
| AvrII | CCTAGG | 1 cut(s) | 517 |
| BauI | CACGAG | 1 cut(s) | 428 |
| BbsI | GAAGAC | 1 cut(s) | 309 |
| BbvI | GCAGC | 3 cut(s) | 32, 186, 571 |
| BclI | TGATCA | 1 cut(s) | 349 |
| BcoDI | GTCTC | 1 cut(s) | 170 |
| BfaI | CTAG | 4 cut(s) | 24, 123, 320, 518 |
| BfrI | CTTAAG | 1 cut(s) | 356 |
| BglII | AGATCT | 1 cut(s) | 51 |
| BisI | GCNGC | 3 cut(s) | 21, 200, 585 |
| BlnI | CCTAGG | 1 cut(s) | 517 |
| BlpI | GCTNAGC | 1 cut(s) | 270 |
| BlsI | GCNGC | 3 cut(s) | 22, 201, 586 |
| BmrI | ACTGGG | 1 cut(s) | 43 |
| BmsI | GCATC | 1 cut(s) | 573 |
| BmuI | ACTGGG | 1 cut(s) | 43 |
| BpiI | GAAGAC | 1 cut(s) | 309 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 258, 290 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 270 |
| BsaBI | GATNNNNATC | 1 cut(s) | 230 |
| BsaJI | CCNNGG | 3 cut(s) | 294, 517, 603 |
| Bse1I | ACTGG | 1 cut(s) | 38 |
| Bse8I | GATNNNNATC | 1 cut(s) | 230 |
| BseDI | CCNNGG | 3 cut(s) | 294, 517, 603 |
| BseJI | GATNNNNATC | 1 cut(s) | 230 |
| BseMII | CTCAG | 4 cut(s) | 99, 138, 165, 480 |
| BseNI | ACTGG | 1 cut(s) | 38 |
| BseRI | GAGGAG | 1 cut(s) | 611 |
| BseXI | GCAGC | 3 cut(s) | 32, 186, 571 |
| BseYI | CCCAGC | 1 cut(s) | 500 |
| BsgI | GTGCAG | 1 cut(s) | 39 |
| BshFI | GGCC | 2 cut(s) | 536, 602 |
| BsmAI | GTCTC | 1 cut(s) | 170 |
| BsnI | GGCC | 2 cut(s) | 536, 602 |
| Bsp143I | GATC | 3 cut(s) | 51, 349, 435 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 270 |
| Bsp19I | CCATGG | 1 cut(s) | 294 |
| BspANI | GGCC | 2 cut(s) | 536, 602 |
| BspCNI | CTCAG | 4 cut(s) | 100, 139, 166, 481 |
| BspPI | GGATC | 1 cut(s) | 443 |
| BspTI | CTTAAG | 1 cut(s) | 356 |
| BsrI | ACTGG | 1 cut(s) | 38 |
| BssECI | CCNNGG | 3 cut(s) | 294, 517, 603 |
| BssMI | GATC | 3 cut(s) | 51, 349, 435 |
| BssSI | CACGAG | 1 cut(s) | 428 |
| BssT1I | CCWWGG | 3 cut(s) | 294, 517, 603 |
| Bst2BI | CACGAG | 1 cut(s) | 428 |
| Bst4CI | ACNGT | 1 cut(s) | 477 |
| BstAFI | CTTAAG | 1 cut(s) | 356 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 570 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 6 cut(s) | 108, 147, 174, 270, 489, 510 |
| BstDSI | CCRYGG | 1 cut(s) | 294 |
| BstKTI | GATC | 3 cut(s) | 54, 352, 438 |
| BstMAI | GTCTC | 1 cut(s) | 170 |
| BstMBI | GATC | 3 cut(s) | 51, 349, 435 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 179, 570 |
| BstV1I | GCAGC | 3 cut(s) | 32, 186, 571 |
| BstV2I | GAAGAC | 1 cut(s) | 309 |
| BstX2I | RGATCY | 1 cut(s) | 51 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 203 |
| BstYI | RGATCY | 1 cut(s) | 51 |
| BsuRI | GGCC | 2 cut(s) | 536, 602 |
| BtgI | CCRYGG | 1 cut(s) | 294 |
| BtsI | GCAGTG | 1 cut(s) | 276 |
| BtsIMutI | CAGTG | 3 cut(s) | 276, 482, 553 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| Csp6I | GTAC | 1 cut(s) | 130 |
| CviAII | CATG | 4 cut(s) | 203, 295, 307, 538 |
| CviQI | GTAC | 1 cut(s) | 130 |
| DdeI | CTNAG | 6 cut(s) | 108, 147, 174, 270, 489, 510 |
| DpnI | GATC | 3 cut(s) | 53, 351, 437 |
| DpnII | GATC | 3 cut(s) | 51, 349, 435 |
| Eco130I | CCWWGG | 3 cut(s) | 294, 517, 603 |
| Eco57I | CTGAAG | 1 cut(s) | 269 |
| EcoT14I | CCWWGG | 3 cut(s) | 294, 517, 603 |
| ErhI | CCWWGG | 3 cut(s) | 294, 517, 603 |
| FaeI | CATG | 4 cut(s) | 206, 298, 310, 541 |
| FatI | CATG | 4 cut(s) | 202, 294, 306, 537 |
| FbaI | TGATCA | 1 cut(s) | 349 |
| Fnu4HI | GCNGC | 3 cut(s) | 21, 200, 585 |
| Fsp4HI | GCNGC | 3 cut(s) | 21, 200, 585 |
| FspBI | CTAG | 4 cut(s) | 24, 123, 320, 518 |
| GluI | GCNGC | 3 cut(s) | 21, 200, 585 |
| GsaI | CCCAGC | 1 cut(s) | 504 |
| HaeIII | GGCC | 2 cut(s) | 536, 602 |
| Hin1II | CATG | 4 cut(s) | 206, 298, 310, 541 |
| HphI | GGTGA | 3 cut(s) | 49, 446, 454 |
| Hpy166II | GTNNAC | 1 cut(s) | 156 |
| Hpy188I | TCNGA | 3 cut(s) | 85, 249, 327 |
| Hpy188III | TCNNGA | 3 cut(s) | 107, 157, 439 |
| Hpy8I | GTNNAC | 1 cut(s) | 156 |
| HpyAV | CCTTC | 1 cut(s) | 526 |
| HpyCH4III | ACNGT | 1 cut(s) | 477 |
| HpyCH4V | TGCA | 3 cut(s) | 20, 202, 587 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 179, 570 |
| HpyF3I | CTNAG | 6 cut(s) | 108, 147, 174, 270, 489, 510 |
| Hsp92II | CATG | 4 cut(s) | 206, 298, 310, 541 |
| Ksp22I | TGATCA | 1 cut(s) | 349 |
| Kzo9I | GATC | 3 cut(s) | 51, 349, 435 |
| LmnI | GCTCC | 1 cut(s) | 266 |
| LpnPI | CCDG | 8 cut(s) | 18, 19, 120, 209, 220, 351, 514, 606 |
| Lsp1109I | GCAGC | 3 cut(s) | 32, 186, 571 |
| LweI | GCATC | 1 cut(s) | 573 |
| MaeI | CTAG | 4 cut(s) | 24, 123, 320, 518 |
| MaeIII | GTNAC | 2 cut(s) | 164, 445 |
| MalI | GATC | 3 cut(s) | 53, 351, 437 |
| MboI | GATC | 3 cut(s) | 51, 349, 435 |
| MboII | GAAGA | 5 cut(s) | 235, 262, 314, 493, 505 |
| MflI | RGATCY | 1 cut(s) | 51 |
| MluCI | AATT | 1 cut(s) | 344 |
| MseI | TTAA | 1 cut(s) | 357 |
| MspA1I | CMGCKG | 1 cut(s) | 199 |
| MspCI | CTTAAG | 1 cut(s) | 356 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 179, 570 |
| NcoI | CCATGG | 1 cut(s) | 294 |
| NdeII | GATC | 3 cut(s) | 51, 349, 435 |
| NlaIII | CATG | 4 cut(s) | 206, 298, 310, 541 |
| NmuCI | GTSAC | 1 cut(s) | 164 |
| PflFI | GACNNNGTC | 1 cut(s) | 79 |
| PkrI | GCNGC | 3 cut(s) | 22, 201, 586 |
| PspFI | CCCAGC | 1 cut(s) | 500 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 306, 338 |
| PsuI | RGATCY | 1 cut(s) | 51 |
| PsyI | GACNNNGTC | 1 cut(s) | 79 |
| PvuII | CAGCTG | 1 cut(s) | 199 |
| RsaI | GTAC | 1 cut(s) | 131 |
| RsaNI | GTAC | 1 cut(s) | 130 |
| SaqAI | TTAA | 1 cut(s) | 357 |
| SatI | GCNGC | 3 cut(s) | 21, 200, 585 |
| Sau3AI | GATC | 3 cut(s) | 51, 349, 435 |
| SfaNI | GCATC | 1 cut(s) | 573 |
| SmlI | CTYRAG | 1 cut(s) | 356 |
| SmoI | CTYRAG | 1 cut(s) | 356 |
| Sse9I | AATT | 1 cut(s) | 344 |
| SspMI | CTAG | 4 cut(s) | 24, 123, 320, 518 |
| StyI | CCWWGG | 3 cut(s) | 294, 517, 603 |
| TaaI | ACNGT | 1 cut(s) | 477 |
| TasI | AATT | 1 cut(s) | 344 |
| Tru1I | TTAA | 1 cut(s) | 357 |
| Tru9I | TTAA | 1 cut(s) | 357 |
| TscAI | CASTG | 3 cut(s) | 283, 482, 553 |
| TseFI | GTSAC | 1 cut(s) | 164 |
| TseI | GCWGC | 3 cut(s) | 20, 199, 584 |
| Tsp45I | GTSAC | 1 cut(s) | 164 |
| TspDTI | ATGAA | 4 cut(s) | 224, 236, 242, 554 |
| TspRI | CASTG | 3 cut(s) | 283, 482, 553 |
| Tth111I | GACNNNGTC | 1 cut(s) | 79 |
| Vha464I | CTTAAG | 1 cut(s) | 356 |
| XapI | RAATTY | 1 cut(s) | 344 |
| XmaJI | CCTAGG | 1 cut(s) | 517 |
| XspI | CTAG | 4 cut(s) | 24, 123, 320, 518 |