gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 347 |
| AcsI | RAATTY | 1 cut(s) | 55 |
| AcuI | CTGAAG | 1 cut(s) | 87 |
| AfaI | GTAC | 1 cut(s) | 345 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 430 |
| AgsI | TTSAA | 3 cut(s) | 164, 203, 340 |
| AluBI | AGCT | 3 cut(s) | 89, 146, 488 |
| AluI | AGCT | 3 cut(s) | 89, 146, 488 |
| Alw21I | GWGCWC | 2 cut(s) | 372, 379 |
| Alw44I | GTGCAC | 2 cut(s) | 368, 375 |
| AlwI | GGATC | 1 cut(s) | 347 |
| ApaLI | GTGCAC | 2 cut(s) | 368, 375 |
| ApoI | RAATTY | 1 cut(s) | 55 |
| AsuHPI | GGTGA | 1 cut(s) | 112 |
| AsuII | TTCGAA | 1 cut(s) | 140 |
| BaeGI | GKGCMC | 2 cut(s) | 372, 379 |
| BauI | CACGAG | 1 cut(s) | 610 |
| BbsI | GAAGAC | 1 cut(s) | 137 |
| Bbv12I | GWGCWC | 2 cut(s) | 372, 379 |
| BccI | CCATC | 1 cut(s) | 91 |
| BclI | TGATCA | 1 cut(s) | 397 |
| BfaI | CTAG | 5 cut(s) | 252, 365, 569, 584, 640 |
| BpiI | GAAGAC | 1 cut(s) | 137 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 282, 314 |
| Bpu14I | TTCGAA | 1 cut(s) | 140 |
| BpuEI | CTTGAG | 1 cut(s) | 491 |
| Bsa29I | ATCGAT | 1 cut(s) | 12 |
| BsaBI | GATNNNNATC | 1 cut(s) | 458 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 270, 300 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 430 |
| Bse1I | ACTGG | 1 cut(s) | 384 |
| Bse8I | GATNNNNATC | 1 cut(s) | 458 |
| BseCI | ATCGAT | 1 cut(s) | 12 |
| BseGI | GGATG | 3 cut(s) | 102, 451, 544 |
| BseJI | GATNNNNATC | 1 cut(s) | 458 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 430 |
| BseNI | ACTGG | 1 cut(s) | 384 |
| BseSI | GKGCMC | 2 cut(s) | 372, 379 |
| BsgI | GTGCAG | 1 cut(s) | 617 |
| BshVI | ATCGAT | 1 cut(s) | 12 |
| BsiHKAI | GWGCWC | 2 cut(s) | 372, 379 |
| BslFI | GGGAC | 1 cut(s) | 318 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 430 |
| BsmFI | GGGAC | 1 cut(s) | 318 |
| Bsp119I | TTCGAA | 1 cut(s) | 140 |
| Bsp1286I | GDGCHC | 2 cut(s) | 372, 379 |
| Bsp143I | GATC | 2 cut(s) | 352, 397 |
| BspDI | ATCGAT | 1 cut(s) | 12 |
| BspHI | TCATGA | 1 cut(s) | 598 |
| BspPI | GGATC | 1 cut(s) | 347 |
| BspT104I | TTCGAA | 1 cut(s) | 140 |
| BsrI | ACTGG | 1 cut(s) | 384 |
| BssMI | GATC | 2 cut(s) | 352, 397 |
| BssSI | CACGAG | 1 cut(s) | 610 |
| Bst2BI | CACGAG | 1 cut(s) | 610 |
| Bst4CI | ACNGT | 1 cut(s) | 374 |
| Bst6I | CTCTTC | 1 cut(s) | 600 |
| BstBI | TTCGAA | 1 cut(s) | 140 |
| BstC8I | GCNNGC | 1 cut(s) | 258 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 428 |
| BstF5I | GGATG | 3 cut(s) | 102, 451, 544 |
| BstKTI | GATC | 2 cut(s) | 355, 400 |
| BstMBI | GATC | 2 cut(s) | 352, 397 |
| BstNSI | RCATGY | 1 cut(s) | 607 |
| BstSLI | GKGCMC | 2 cut(s) | 372, 379 |
| BstV2I | GAAGAC | 1 cut(s) | 137 |
| Bsu15I | ATCGAT | 1 cut(s) | 12 |
| BsuTUI | ATCGAT | 1 cut(s) | 12 |
| BtsCI | GGATG | 3 cut(s) | 102, 451, 544 |
| BtsIMutI | CAGTG | 2 cut(s) | 377, 379 |
| Cac8I | GCNNGC | 1 cut(s) | 258 |
| CciI | TCATGA | 1 cut(s) | 598 |
| ClaI | ATCGAT | 1 cut(s) | 12 |
| Csp6I | GTAC | 1 cut(s) | 344 |
| CviAII | CATG | 6 cut(s) | 83, 301, 310, 508, 599, 604 |
| CviJI | RGCY | 7 cut(s) | 37, 89, 146, 230, 256, 260, 488 |
| CviKI_1 | RGCY | 7 cut(s) | 37, 89, 146, 230, 256, 260, 488 |
| CviQI | GTAC | 1 cut(s) | 344 |
| DpnI | GATC | 2 cut(s) | 354, 399 |
| DpnII | GATC | 2 cut(s) | 352, 397 |
| Eam1104I | CTCTTC | 1 cut(s) | 600 |
| EarI | CTCTTC | 1 cut(s) | 600 |
| Eco32I | GATATC | 1 cut(s) | 10 |
| Eco57I | CTGAAG | 1 cut(s) | 87 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 428 |
| EcoRI | GAATTC | 1 cut(s) | 55 |
| EcoRV | GATATC | 1 cut(s) | 10 |
| FaeI | CATG | 6 cut(s) | 86, 304, 313, 511, 602, 607 |
| FaqI | GGGAC | 1 cut(s) | 318 |
| FatI | CATG | 6 cut(s) | 82, 300, 309, 507, 598, 603 |
| FbaI | TGATCA | 1 cut(s) | 397 |
| FokI | GGATG | 3 cut(s) | 109, 458, 551 |
| FspBI | CTAG | 5 cut(s) | 252, 365, 569, 584, 640 |
| Hin1II | CATG | 6 cut(s) | 86, 304, 313, 511, 602, 607 |
| HincII | GTYRAC | 1 cut(s) | 505 |
| HindII | GTYRAC | 1 cut(s) | 505 |
| HindIII | AAGCTT | 2 cut(s) | 87, 486 |
| HinfI | GANTC | 5 cut(s) | 194, 218, 241, 306, 383 |
| HpaI | GTTAAC | 1 cut(s) | 505 |
| HphI | GGTGA | 1 cut(s) | 112 |
| Hpy166II | GTNNAC | 3 cut(s) | 370, 377, 505 |
| Hpy188I | TCNGA | 2 cut(s) | 357, 402 |
| Hpy188III | TCNNGA | 3 cut(s) | 470, 599, 610 |
| Hpy8I | GTNNAC | 3 cut(s) | 370, 377, 505 |
| HpyAV | CCTTC | 1 cut(s) | 269 |
| HpyCH4III | ACNGT | 1 cut(s) | 374 |
| HpyCH4V | TGCA | 5 cut(s) | 82, 370, 377, 545, 634 |
| Hsp92II | CATG | 6 cut(s) | 86, 304, 313, 511, 602, 607 |
| Ksp22I | TGATCA | 1 cut(s) | 397 |
| KspAI | GTTAAC | 1 cut(s) | 505 |
| Kzo9I | GATC | 2 cut(s) | 352, 397 |
| LpnPI | CCDG | 6 cut(s) | 55, 60, 242, 319, 365, 437 |
| MaeI | CTAG | 5 cut(s) | 252, 365, 569, 584, 640 |
| MaeIII | GTNAC | 2 cut(s) | 511, 586 |
| MalI | GATC | 2 cut(s) | 354, 399 |
| MboI | GATC | 2 cut(s) | 352, 397 |
| MboII | GAAGA | 5 cut(s) | 139, 142, 176, 250, 587 |
| MfeI | CAATTG | 1 cut(s) | 198 |
| MhlI | GDGCHC | 2 cut(s) | 372, 379 |
| MluCI | AATT | 3 cut(s) | 55, 135, 198 |
| MlyI | GAGTC | 1 cut(s) | 300 |
| MmeI | TCCRAC | 1 cut(s) | 380 |
| MnlI | CCTC | 4 cut(s) | 87, 272, 424, 606 |
| MseI | TTAA | 2 cut(s) | 213, 504 |
| MunI | CAATTG | 1 cut(s) | 198 |
| NdeII | GATC | 2 cut(s) | 352, 397 |
| NlaIII | CATG | 6 cut(s) | 86, 304, 313, 511, 602, 607 |
| NmuCI | GTSAC | 2 cut(s) | 511, 586 |
| NspI | RCATGY | 1 cut(s) | 607 |
| NspV | TTCGAA | 1 cut(s) | 140 |
| PagI | TCATGA | 1 cut(s) | 598 |
| PfeI | GAWTC | 4 cut(s) | 194, 218, 241, 383 |
| PleI | GAGTC | 1 cut(s) | 300 |
| PpsI | GAGTC | 1 cut(s) | 300 |
| RsaI | GTAC | 1 cut(s) | 345 |
| RsaNI | GTAC | 1 cut(s) | 344 |
| SaqAI | TTAA | 2 cut(s) | 213, 504 |
| Sau3AI | GATC | 2 cut(s) | 352, 397 |
| SchI | GAGTC | 1 cut(s) | 300 |
| SduI | GDGCHC | 2 cut(s) | 372, 379 |
| SetI | ASST | 9 cut(s) | 49, 81, 91, 148, 338, 349, 394, 416, 490 |
| SfuI | TTCGAA | 1 cut(s) | 140 |
| SmlI | CTYRAG | 1 cut(s) | 470 |
| SmoI | CTYRAG | 1 cut(s) | 470 |
| Sse9I | AATT | 3 cut(s) | 55, 135, 198 |
| SspMI | CTAG | 5 cut(s) | 252, 365, 569, 584, 640 |
| TaaI | ACNGT | 1 cut(s) | 374 |
| TaqI | TCGA | 2 cut(s) | 12, 140 |
| TasI | AATT | 3 cut(s) | 55, 135, 198 |
| TfiI | GAWTC | 4 cut(s) | 194, 218, 241, 383 |
| Tru1I | TTAA | 2 cut(s) | 213, 504 |
| Tru9I | TTAA | 2 cut(s) | 213, 504 |
| TscAI | CASTG | 2 cut(s) | 379, 384 |
| TseFI | GTSAC | 2 cut(s) | 511, 586 |
| Tsp45I | GTSAC | 2 cut(s) | 511, 586 |
| TspDTI | ATGAA | 7 cut(s) | 17, 99, 140, 281, 288, 419, 587 |
| TspRI | CASTG | 2 cut(s) | 379, 384 |
| VneI | GTGCAC | 2 cut(s) | 368, 375 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 428 |
| XapI | RAATTY | 1 cut(s) | 55 |
| XceI | RCATGY | 1 cut(s) | 607 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 187 |
| XspI | CTAG | 5 cut(s) | 252, 365, 569, 584, 640 |