gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 21 - 137 | 1.1e-15 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 259 |
| AfaI | GTAC | 1 cut(s) | 73 |
| AgsI | TTSAA | 2 cut(s) | 37, 98 |
| AluBI | AGCT | 4 cut(s) | 209, 322, 343, 410 |
| AluI | AGCT | 4 cut(s) | 209, 322, 343, 410 |
| Alw21I | GWGCWC | 1 cut(s) | 387 |
| Alw44I | GTGCAC | 1 cut(s) | 383 |
| AlwI | GGATC | 1 cut(s) | 259 |
| ApaLI | GTGCAC | 1 cut(s) | 383 |
| ApeKI | GCWGC | 1 cut(s) | 40 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 107, 139 |
| BaeGI | GKGCMC | 1 cut(s) | 387 |
| Bbv12I | GWGCWC | 1 cut(s) | 387 |
| BbvI | GCAGC | 1 cut(s) | 52 |
| BccI | CCATC | 1 cut(s) | 281 |
| BfaI | CTAG | 1 cut(s) | 380 |
| BisI | GCNGC | 1 cut(s) | 41 |
| BlsI | GCNGC | 1 cut(s) | 42 |
| BmsI | GCATC | 2 cut(s) | 79, 309 |
| Bpu10I | CCTNAGC | 2 cut(s) | 45, 192 |
| BpuEI | CTTGAG | 1 cut(s) | 302 |
| BseGI | GGATG | 1 cut(s) | 361 |
| BseMII | CTCAG | 2 cut(s) | 57, 360 |
| BseRI | GAGGAG | 1 cut(s) | 180 |
| BseSI | GKGCMC | 1 cut(s) | 387 |
| BseXI | GCAGC | 1 cut(s) | 52 |
| BsiHKAI | GWGCWC | 1 cut(s) | 387 |
| BslFI | GGGAC | 2 cut(s) | 24, 109 |
| BsmFI | GGGAC | 2 cut(s) | 24, 109 |
| BsmI | GAATGC | 1 cut(s) | 148 |
| Bsp1286I | GDGCHC | 1 cut(s) | 387 |
| Bsp143I | GATC | 1 cut(s) | 251 |
| BspCNI | CTCAG | 2 cut(s) | 58, 361 |
| BspPI | GGATC | 1 cut(s) | 259 |
| BssMI | GATC | 1 cut(s) | 251 |
| BstDEI | CTNAG | 4 cut(s) | 45, 66, 192, 369 |
| BstF5I | GGATG | 1 cut(s) | 361 |
| BstKTI | GATC | 1 cut(s) | 254 |
| BstMBI | GATC | 1 cut(s) | 251 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 46, 136 |
| BstNSI | RCATGY | 1 cut(s) | 56 |
| BstSLI | GKGCMC | 1 cut(s) | 387 |
| BstV1I | GCAGC | 1 cut(s) | 52 |
| BstX2I | RGATCY | 1 cut(s) | 251 |
| BstYI | RGATCY | 1 cut(s) | 251 |
| BtsCI | GGATG | 1 cut(s) | 361 |
| Csp6I | GTAC | 1 cut(s) | 72 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 39, 74 |
| CviAII | CATG | 3 cut(s) | 53, 180, 388 |
| CviJI | RGCY | 7 cut(s) | 43, 49, 191, 209, 322, 343, 410 |
| CviKI_1 | RGCY | 7 cut(s) | 43, 49, 191, 209, 322, 343, 410 |
| CviQI | GTAC | 1 cut(s) | 72 |
| DdeI | CTNAG | 4 cut(s) | 45, 66, 192, 369 |
| DpnI | GATC | 1 cut(s) | 253 |
| DpnII | GATC | 1 cut(s) | 251 |
| FaeI | CATG | 3 cut(s) | 56, 183, 391 |
| FaiI | YATR | 7 cut(s) | 54, 137, 149, 159, 173, 181, 389 |
| FaqI | GGGAC | 2 cut(s) | 24, 109 |
| FatI | CATG | 3 cut(s) | 52, 179, 387 |
| Fnu4HI | GCNGC | 1 cut(s) | 41 |
| FokI | GGATG | 1 cut(s) | 368 |
| Fsp4HI | GCNGC | 1 cut(s) | 41 |
| FspBI | CTAG | 1 cut(s) | 380 |
| GluI | GCNGC | 1 cut(s) | 41 |
| Hin1II | CATG | 3 cut(s) | 56, 183, 391 |
| HindIII | AAGCTT | 1 cut(s) | 320 |
| HinfI | GANTC | 1 cut(s) | 4 |
| Hpy166II | GTNNAC | 1 cut(s) | 385 |
| Hpy188I | TCNGA | 3 cut(s) | 235, 305, 370 |
| Hpy8I | GTNNAC | 1 cut(s) | 385 |
| HpyAV | CCTTC | 1 cut(s) | 186 |
| HpyCH4V | TGCA | 2 cut(s) | 139, 385 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 46, 136 |
| HpyF3I | CTNAG | 4 cut(s) | 45, 66, 192, 369 |
| Hsp92II | CATG | 3 cut(s) | 56, 183, 391 |
| Kzo9I | GATC | 1 cut(s) | 251 |
| LmnI | GCTCC | 1 cut(s) | 297 |
| LpnPI | CCDG | 2 cut(s) | 140, 234 |
| Lsp1109I | GCAGC | 1 cut(s) | 52 |
| LweI | GCATC | 2 cut(s) | 79, 309 |
| MaeI | CTAG | 1 cut(s) | 380 |
| MalI | GATC | 1 cut(s) | 253 |
| MboI | GATC | 1 cut(s) | 251 |
| MflI | RGATCY | 1 cut(s) | 251 |
| MhlI | GDGCHC | 1 cut(s) | 387 |
| MluCI | AATT | 1 cut(s) | 374 |
| MnlI | CCTC | 7 cut(s) | 145, 158, 161, 208, 222, 238, 274 |
| MspA1I | CMGCKG | 1 cut(s) | 410 |
| Mva1269I | GAATGC | 1 cut(s) | 148 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 46, 136 |
| NdeII | GATC | 1 cut(s) | 251 |
| NlaIII | CATG | 3 cut(s) | 56, 183, 391 |
| NspI | RCATGY | 1 cut(s) | 56 |
| PctI | GAATGC | 1 cut(s) | 148 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PkrI | GCNGC | 1 cut(s) | 42 |
| PsuI | RGATCY | 1 cut(s) | 251 |
| PvuII | CAGCTG | 1 cut(s) | 410 |
| RsaI | GTAC | 1 cut(s) | 73 |
| RsaNI | GTAC | 1 cut(s) | 72 |
| SatI | GCNGC | 1 cut(s) | 41 |
| Sau3AI | GATC | 1 cut(s) | 251 |
| SduI | GDGCHC | 1 cut(s) | 387 |
| SetI | ASST | 7 cut(s) | 178, 211, 233, 315, 324, 345, 412 |
| SfaNI | GCATC | 2 cut(s) | 79, 309 |
| SmlI | CTYRAG | 1 cut(s) | 317 |
| SmoI | CTYRAG | 1 cut(s) | 317 |
| Sse9I | AATT | 1 cut(s) | 374 |
| SspI | AATATT | 1 cut(s) | 331 |
| SspMI | CTAG | 1 cut(s) | 380 |
| TasI | AATT | 1 cut(s) | 374 |
| TatI | WGTACW | 1 cut(s) | 71 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| TseI | GCWGC | 1 cut(s) | 40 |
| TspDTI | ATGAA | 3 cut(s) | 17, 132, 168 |
| VneI | GTGCAC | 1 cut(s) | 383 |
| XceI | RCATGY | 1 cut(s) | 56 |
| XspI | CTAG | 1 cut(s) | 380 |