gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 25 - 198 | 1.3e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 133 |
| AclWI | GGATC | 3 cut(s) | 102, 411, 736 |
| AcsI | RAATTY | 3 cut(s) | 356, 607, 687 |
| AcuI | CTGAAG | 1 cut(s) | 413 |
| AdeI | CACNNNGTG | 1 cut(s) | 558 |
| AfaI | GTAC | 1 cut(s) | 435 |
| AgsI | TTSAA | 9 cut(s) | 19, 74, 351, 421, 431, 472, 486, 654, 758 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 66, 98 |
| AluBI | AGCT | 3 cut(s) | 131, 317, 499 |
| AluI | AGCT | 3 cut(s) | 131, 317, 499 |
| Alw21I | GWGCWC | 2 cut(s) | 149, 565 |
| Alw26I | GTCTC | 2 cut(s) | 23, 788 |
| Alw44I | GTGCAC | 1 cut(s) | 561 |
| AlwI | GGATC | 3 cut(s) | 102, 411, 736 |
| AoxI | GGCC | 1 cut(s) | 85 |
| ApaLI | GTGCAC | 1 cut(s) | 561 |
| ApeKI | GCWGC | 4 cut(s) | 128, 281, 496, 662 |
| ApoI | RAATTY | 3 cut(s) | 356, 607, 687 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 182, 214 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 78, 387 |
| AspS9I | GGNCC | 1 cut(s) | 424 |
| AsuHPI | GGTGA | 2 cut(s) | 377, 830 |
| AvaII | GGWCC | 1 cut(s) | 424 |
| BaeGI | GKGCMC | 1 cut(s) | 565 |
| Bbv12I | GWGCWC | 2 cut(s) | 149, 565 |
| BbvI | GCAGC | 4 cut(s) | 140, 268, 508, 649 |
| BccI | CCATC | 3 cut(s) | 238, 356, 391 |
| BclI | TGATCA | 2 cut(s) | 445, 549 |
| BcoDI | GTCTC | 2 cut(s) | 23, 788 |
| BfaI | CTAG | 1 cut(s) | 455 |
| BfmI | CTRYAG | 4 cut(s) | 126, 138, 150, 282 |
| BfuAI | ACCTGC | 1 cut(s) | 133 |
| BisI | GCNGC | 4 cut(s) | 129, 282, 497, 663 |
| BlsI | GCNGC | 4 cut(s) | 130, 283, 498, 664 |
| Bme18I | GGWCC | 1 cut(s) | 424 |
| BmgT120I | GGNCC | 1 cut(s) | 424 |
| BmiI | GGNNCC | 1 cut(s) | 228 |
| BmrI | ACTGGG | 1 cut(s) | 333 |
| BmuI | ACTGGG | 1 cut(s) | 333 |
| BpuEI | CTTGAG | 3 cut(s) | 485, 566, 630 |
| BsaI | GGTCTC | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 1 cut(s) | 657 |
| Bse1I | ACTGG | 2 cut(s) | 43, 328 |
| Bse3DI | GCAATG | 1 cut(s) | 228 |
| BseDI | CCNNGG | 1 cut(s) | 657 |
| BseGI | GGATG | 4 cut(s) | 5, 73, 201, 607 |
| BseMI | GCAATG | 1 cut(s) | 228 |
| BseMII | CTCAG | 2 cut(s) | 162, 533 |
| BseNI | ACTGG | 2 cut(s) | 43, 328 |
| BseSI | GKGCMC | 1 cut(s) | 565 |
| BseXI | GCAGC | 4 cut(s) | 140, 268, 508, 649 |
| BshFI | GGCC | 1 cut(s) | 87 |
| BsiHKAI | GWGCWC | 2 cut(s) | 149, 565 |
| BslFI | GGGAC | 2 cut(s) | 340, 650 |
| BsmAI | GTCTC | 2 cut(s) | 23, 788 |
| BsmFI | GGGAC | 2 cut(s) | 340, 650 |
| BsnI | GGCC | 1 cut(s) | 87 |
| Bso31I | GGTCTC | 1 cut(s) | 23 |
| Bsp1286I | GDGCHC | 2 cut(s) | 149, 565 |
| Bsp143I | GATC | 7 cut(s) | 94, 154, 403, 445, 549, 574, 728 |
| BspANI | GGCC | 1 cut(s) | 87 |
| BspCNI | CTCAG | 2 cut(s) | 163, 532 |
| BspLI | GGNNCC | 1 cut(s) | 228 |
| BspMAI | CTGCAG | 3 cut(s) | 130, 142, 286 |
| BspMI | ACCTGC | 1 cut(s) | 133 |
| BspPI | GGATC | 3 cut(s) | 102, 411, 736 |
| BspTNI | GGTCTC | 1 cut(s) | 23 |
| BsrDI | GCAATG | 1 cut(s) | 228 |
| BsrI | ACTGG | 2 cut(s) | 43, 328 |
| BssECI | CCNNGG | 1 cut(s) | 657 |
| BssMI | GATC | 7 cut(s) | 94, 154, 403, 445, 549, 574, 728 |
| Bst4CI | ACNGT | 1 cut(s) | 658 |
| BstDEI | CTNAG | 2 cut(s) | 171, 519 |
| BstDSI | CCRYGG | 1 cut(s) | 657 |
| BstF5I | GGATG | 4 cut(s) | 5, 73, 201, 607 |
| BstKTI | GATC | 7 cut(s) | 97, 157, 406, 448, 552, 577, 731 |
| BstMAI | GTCTC | 2 cut(s) | 23, 788 |
| BstMBI | GATC | 7 cut(s) | 94, 154, 403, 445, 549, 574, 728 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 137 |
| BstSFI | CTRYAG | 4 cut(s) | 126, 138, 150, 282 |
| BstSLI | GKGCMC | 1 cut(s) | 565 |
| BstV1I | GCAGC | 4 cut(s) | 140, 268, 508, 649 |
| BstX2I | RGATCY | 3 cut(s) | 94, 403, 728 |
| BstYI | RGATCY | 3 cut(s) | 94, 403, 728 |
| BsuRI | GGCC | 1 cut(s) | 87 |
| BtgI | CCRYGG | 1 cut(s) | 657 |
| BtsCI | GGATG | 4 cut(s) | 5, 73, 201, 607 |
| BtsIMutI | CAGTG | 2 cut(s) | 200, 603 |
| BveI | ACCTGC | 1 cut(s) | 133 |
| Cfr13I | GGNCC | 1 cut(s) | 424 |
| Csp6I | GTAC | 1 cut(s) | 434 |
| CviAII | CATG | 2 cut(s) | 439, 828 |
| CviQI | GTAC | 1 cut(s) | 434 |
| DdeI | CTNAG | 2 cut(s) | 171, 519 |
| DpnI | GATC | 7 cut(s) | 96, 156, 405, 447, 551, 576, 730 |
| DpnII | GATC | 7 cut(s) | 94, 154, 403, 445, 549, 574, 728 |
| DraI | TTTAAA | 2 cut(s) | 301, 703 |
| DraIII | CACNNNGTG | 1 cut(s) | 558 |
| Eco31I | GGTCTC | 1 cut(s) | 23 |
| Eco47I | GGWCC | 1 cut(s) | 424 |
| Eco57I | CTGAAG | 1 cut(s) | 413 |
| EcoO109I | RGGNCCY | 1 cut(s) | 424 |
| FaeI | CATG | 2 cut(s) | 442, 831 |
| FaqI | GGGAC | 2 cut(s) | 340, 650 |
| FatI | CATG | 2 cut(s) | 438, 827 |
| FauNDI | CATATG | 1 cut(s) | 462 |
| FbaI | TGATCA | 2 cut(s) | 445, 549 |
| Fnu4HI | GCNGC | 4 cut(s) | 129, 282, 497, 663 |
| FokI | GGATG | 3 cut(s) | 80, 208, 614 |
| Fsp4HI | GCNGC | 4 cut(s) | 129, 282, 497, 663 |
| FspBI | CTAG | 1 cut(s) | 455 |
| GluI | GCNGC | 4 cut(s) | 129, 282, 497, 663 |
| HaeIII | GGCC | 1 cut(s) | 87 |
| Hin1II | CATG | 2 cut(s) | 442, 831 |
| HinfI | GANTC | 1 cut(s) | 305 |
| HphI | GGTGA | 2 cut(s) | 377, 830 |
| Hpy166II | GTNNAC | 1 cut(s) | 563 |
| Hpy188I | TCNGA | 4 cut(s) | 195, 310, 393, 522 |
| Hpy188III | TCNNGA | 2 cut(s) | 98, 583 |
| Hpy8I | GTNNAC | 1 cut(s) | 563 |
| HpyAV | CCTTC | 3 cut(s) | 55, 415, 492 |
| HpyCH4III | ACNGT | 1 cut(s) | 658 |
| HpyCH4V | TGCA | 7 cut(s) | 128, 140, 266, 284, 563, 616, 789 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 137 |
| HpyF3I | CTNAG | 2 cut(s) | 171, 519 |
| Hsp92II | CATG | 2 cut(s) | 442, 831 |
| Ksp22I | TGATCA | 2 cut(s) | 445, 549 |
| Kzo9I | GATC | 7 cut(s) | 94, 154, 403, 445, 549, 574, 728 |
| LmnI | GCTCC | 1 cut(s) | 232 |
| LpnPI | CCDG | 6 cut(s) | 24, 138, 309, 364, 651, 783 |
| Lsp1109I | GCAGC | 4 cut(s) | 140, 268, 508, 649 |
| MaeI | CTAG | 1 cut(s) | 455 |
| MaeIII | GTNAC | 2 cut(s) | 198, 587 |
| MalI | GATC | 7 cut(s) | 96, 156, 405, 447, 551, 576, 730 |
| MboI | GATC | 7 cut(s) | 94, 154, 403, 445, 549, 574, 728 |
| MboII | GAAGA | 8 cut(s) | 406, 581, 584, 684, 685, 687, 688, 691 |
| MflI | RGATCY | 3 cut(s) | 94, 403, 728 |
| MhlI | GDGCHC | 2 cut(s) | 149, 565 |
| MluCI | AATT | 5 cut(s) | 13, 342, 356, 607, 687 |
| MlyI | GAGTC | 1 cut(s) | 314 |
| MnlI | CCTC | 5 cut(s) | 20, 58, 109, 207, 361 |
| MroXI | GAANNNNTTC | 2 cut(s) | 78, 387 |
| MseI | TTAA | 5 cut(s) | 110, 237, 300, 528, 702 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 137 |
| NdeI | CATATG | 1 cut(s) | 462 |
| NdeII | GATC | 7 cut(s) | 94, 154, 403, 445, 549, 574, 728 |
| NlaIII | CATG | 2 cut(s) | 442, 831 |
| NlaIV | GGNNCC | 1 cut(s) | 228 |
| NmuCI | GTSAC | 2 cut(s) | 198, 587 |
| PdmI | GAANNNNTTC | 2 cut(s) | 78, 387 |
| PkrI | GCNGC | 4 cut(s) | 130, 283, 498, 664 |
| PleI | GAGTC | 1 cut(s) | 313 |
| PpsI | GAGTC | 1 cut(s) | 313 |
| PpuMI | RGGWCCY | 1 cut(s) | 424 |
| Psp5II | RGGWCCY | 1 cut(s) | 424 |
| PspN4I | GGNNCC | 1 cut(s) | 228 |
| PspPI | GGNCC | 1 cut(s) | 424 |
| PspPPI | RGGWCCY | 1 cut(s) | 424 |
| PstI | CTGCAG | 3 cut(s) | 130, 142, 286 |
| PsuI | RGATCY | 3 cut(s) | 94, 403, 728 |
| RsaI | GTAC | 1 cut(s) | 435 |
| RsaNI | GTAC | 1 cut(s) | 434 |
| SaqAI | TTAA | 5 cut(s) | 110, 237, 300, 528, 702 |
| SatI | GCNGC | 4 cut(s) | 129, 282, 497, 663 |
| Sau3AI | GATC | 7 cut(s) | 94, 154, 403, 445, 549, 574, 728 |
| Sau96I | GGNCC | 1 cut(s) | 424 |
| SchI | GAGTC | 1 cut(s) | 314 |
| SduI | GDGCHC | 2 cut(s) | 149, 565 |
| SetI | ASST | 9 cut(s) | 35, 127, 133, 319, 429, 484, 501, 507, 652 |
| SfcI | CTRYAG | 4 cut(s) | 126, 138, 150, 282 |
| SinI | GGWCC | 1 cut(s) | 424 |
| SmlI | CTYRAG | 3 cut(s) | 500, 581, 645 |
| SmoI | CTYRAG | 3 cut(s) | 500, 581, 645 |
| Sse9I | AATT | 5 cut(s) | 13, 342, 356, 607, 687 |
| SspI | AATATT | 1 cut(s) | 25 |
| SspMI | CTAG | 1 cut(s) | 455 |
| TaaI | ACNGT | 1 cut(s) | 658 |
| TaqI | TCGA | 1 cut(s) | 99 |
| TasI | AATT | 5 cut(s) | 13, 342, 356, 607, 687 |
| Tru1I | TTAA | 5 cut(s) | 110, 237, 300, 528, 702 |
| Tru9I | TTAA | 5 cut(s) | 110, 237, 300, 528, 702 |
| TscAI | CASTG | 2 cut(s) | 207, 603 |
| TseFI | GTSAC | 2 cut(s) | 198, 587 |
| TseI | GCWGC | 4 cut(s) | 128, 281, 496, 662 |
| Tsp45I | GTSAC | 2 cut(s) | 198, 587 |
| TspDTI | ATGAA | 6 cut(s) | 368, 449, 498, 558, 687, 755 |
| TspRI | CASTG | 2 cut(s) | 207, 603 |
| VneI | GTGCAC | 1 cut(s) | 561 |
| VpaK11BI | GGWCC | 1 cut(s) | 424 |
| XapI | RAATTY | 3 cut(s) | 356, 607, 687 |
| XmnI | GAANNNNTTC | 2 cut(s) | 78, 387 |
| XspI | CTAG | 1 cut(s) | 455 |