Pfam:UBN2_2
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 13 - 169 | 1.6e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 81 |
| AccB1I | GGYRCC | 1 cut(s) | 81 |
| AccI | GTMKAC | 1 cut(s) | 160 |
| AclWI | GGATC | 2 cut(s) | 26, 731 |
| AcsI | RAATTY | 4 cut(s) | 209, 385, 551, 622 |
| AfaI | GTAC | 2 cut(s) | 83, 372 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 484 |
| AflII | CTTAAG | 1 cut(s) | 23 |
| AflIII | ACRYGT | 1 cut(s) | 670 |
| AgsI | TTSAA | 5 cut(s) | 214, 385, 468, 556, 697 |
| AjnI | CCWGG | 1 cut(s) | 664 |
| AluBI | AGCT | 4 cut(s) | 41, 146, 230, 323 |
| AluI | AGCT | 4 cut(s) | 41, 146, 230, 323 |
| Alw26I | GTCTC | 1 cut(s) | 260 |
| AlwI | GGATC | 2 cut(s) | 26, 731 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 146 |
| ApeKI | GCWGC | 1 cut(s) | 323 |
| ApoI | RAATTY | 4 cut(s) | 209, 385, 551, 622 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 551 |
| Asp718I | GGTACC | 1 cut(s) | 81 |
| AspS9I | GGNCC | 1 cut(s) | 337 |
| AsuHPI | GGTGA | 1 cut(s) | 590 |
| AvaII | GGWCC | 1 cut(s) | 337 |
| BanI | GGYRCC | 1 cut(s) | 81 |
| BbvI | GCAGC | 1 cut(s) | 310 |
| BccI | CCATC | 2 cut(s) | 93, 269 |
| BciT130I | CCWGG | 1 cut(s) | 666 |
| BcoDI | GTCTC | 1 cut(s) | 260 |
| BfaI | CTAG | 3 cut(s) | 116, 180, 609 |
| BfmI | CTRYAG | 1 cut(s) | 559 |
| BfrI | CTTAAG | 1 cut(s) | 23 |
| BisI | GCNGC | 1 cut(s) | 324 |
| BlsI | GCNGC | 1 cut(s) | 325 |
| Bme1390I | CCNGG | 1 cut(s) | 666 |
| Bme18I | GGWCC | 1 cut(s) | 337 |
| BmgT120I | GGNCC | 1 cut(s) | 337 |
| BmiI | GGNNCC | 1 cut(s) | 83 |
| BmrFI | CCNGG | 1 cut(s) | 666 |
| BmsI | GCATC | 2 cut(s) | 402, 519 |
| BpuEI | CTTGAG | 1 cut(s) | 317 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 484 |
| Bse1I | ACTGG | 1 cut(s) | 465 |
| BseBI | CCWGG | 1 cut(s) | 666 |
| BseGI | GGATG | 1 cut(s) | 73 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 484 |
| BseMII | CTCAG | 4 cut(s) | 156, 162, 551, 614 |
| BseNI | ACTGG | 1 cut(s) | 465 |
| BseXI | GCAGC | 1 cut(s) | 310 |
| BshNI | GGYRCC | 1 cut(s) | 81 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 484 |
| BsmAI | GTCTC | 1 cut(s) | 260 |
| Bsp143I | GATC | 3 cut(s) | 31, 563, 736 |
| BspCNI | CTCAG | 4 cut(s) | 157, 163, 550, 613 |
| BspLI | GGNNCC | 1 cut(s) | 83 |
| BspPI | GGATC | 2 cut(s) | 26, 731 |
| BspT107I | GGYRCC | 1 cut(s) | 81 |
| BspTI | CTTAAG | 1 cut(s) | 23 |
| BsrI | ACTGG | 1 cut(s) | 465 |
| BssMI | GATC | 3 cut(s) | 31, 563, 736 |
| BssNAI | GTATAC | 1 cut(s) | 161 |
| Bst1107I | GTATAC | 1 cut(s) | 161 |
| Bst2UI | CCWGG | 1 cut(s) | 666 |
| Bst6I | CTCTTC | 1 cut(s) | 477 |
| BstAFI | CTTAAG | 1 cut(s) | 23 |
| BstC8I | GCNNGC | 1 cut(s) | 533 |
| BstDEI | CTNAG | 5 cut(s) | 165, 171, 537, 600, 726 |
| BstF5I | GGATG | 1 cut(s) | 73 |
| BstKTI | GATC | 3 cut(s) | 34, 566, 739 |
| BstMAI | GTCTC | 1 cut(s) | 260 |
| BstMBI | GATC | 3 cut(s) | 31, 563, 736 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 654 |
| BstNI | CCWGG | 1 cut(s) | 666 |
| BstNSI | RCATGY | 1 cut(s) | 674 |
| BstSCI | CCNGG | 1 cut(s) | 664 |
| BstSFI | CTRYAG | 1 cut(s) | 559 |
| BstV1I | GCAGC | 1 cut(s) | 310 |
| BstX2I | RGATCY | 2 cut(s) | 31, 736 |
| BstYI | RGATCY | 2 cut(s) | 31, 736 |
| BstZ17I | GTATAC | 1 cut(s) | 161 |
| BtsCI | GGATG | 1 cut(s) | 73 |
| Cac8I | GCNNGC | 1 cut(s) | 533 |
| CaiI | CAGNNNCTG | 1 cut(s) | 146 |
| Cfr13I | GGNCC | 1 cut(s) | 337 |
| Csp6I | GTAC | 2 cut(s) | 82, 371 |
| CviAII | CATG | 3 cut(s) | 17, 265, 671 |
| CviJI | RGCY | 7 cut(s) | 41, 146, 230, 323, 535, 664, 706 |
| CviKI_1 | RGCY | 7 cut(s) | 41, 146, 230, 323, 535, 664, 706 |
| CviQI | GTAC | 2 cut(s) | 82, 371 |
| DdeI | CTNAG | 5 cut(s) | 165, 171, 537, 600, 726 |
| DpnI | GATC | 3 cut(s) | 33, 565, 738 |
| DpnII | GATC | 3 cut(s) | 31, 563, 736 |
| DraI | TTTAAA | 1 cut(s) | 193 |
| Eam1104I | CTCTTC | 1 cut(s) | 477 |
| EarI | CTCTTC | 1 cut(s) | 477 |
| Eco47I | GGWCC | 1 cut(s) | 337 |
| EcoO109I | RGGNCCY | 1 cut(s) | 337 |
| EcoRI | GAATTC | 1 cut(s) | 385 |
| EcoRII | CCWGG | 1 cut(s) | 664 |
| FaeI | CATG | 3 cut(s) | 20, 268, 674 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 690, 722 |
| FatI | CATG | 3 cut(s) | 16, 264, 670 |
| FblI | GTMKAC | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 1 cut(s) | 324 |
| FokI | GGATG | 1 cut(s) | 80 |
| Fsp4HI | GCNGC | 1 cut(s) | 324 |
| FspBI | CTAG | 3 cut(s) | 116, 180, 609 |
| GluI | GCNGC | 1 cut(s) | 324 |
| Hin1II | CATG | 3 cut(s) | 20, 268, 674 |
| HinfI | GANTC | 2 cut(s) | 167, 581 |
| HphI | GGTGA | 1 cut(s) | 590 |
| Hpy166II | GTNNAC | 2 cut(s) | 161, 373 |
| Hpy188I | TCNGA | 5 cut(s) | 172, 223, 411, 515, 619 |
| Hpy8I | GTNNAC | 2 cut(s) | 161, 373 |
| HpyAV | CCTTC | 4 cut(s) | 301, 373, 430, 493 |
| HpyCH4V | TGCA | 4 cut(s) | 326, 379, 415, 687 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 654 |
| HpyF3I | CTNAG | 5 cut(s) | 165, 171, 537, 600, 726 |
| Hsp92II | CATG | 3 cut(s) | 20, 268, 674 |
| KpnI | GGTACC | 1 cut(s) | 85 |
| Kzo9I | GATC | 3 cut(s) | 31, 563, 736 |
| LpnPI | CCDG | 7 cut(s) | 51, 73, 177, 446, 587, 651, 678 |
| Lsp1109I | GCAGC | 1 cut(s) | 310 |
| LweI | GCATC | 2 cut(s) | 402, 519 |
| MaeI | CTAG | 3 cut(s) | 116, 180, 609 |
| MaeIII | GTNAC | 1 cut(s) | 578 |
| MalI | GATC | 3 cut(s) | 33, 565, 738 |
| MboI | GATC | 3 cut(s) | 31, 563, 736 |
| MboII | GAAGA | 9 cut(s) | 41, 139, 215, 494, 559, 579, 724, 743, 746 |
| MflI | RGATCY | 2 cut(s) | 31, 736 |
| MlyI | GAGTC | 2 cut(s) | 176, 575 |
| MmeI | TCCRAC | 2 cut(s) | 262, 425 |
| MnlI | CCTC | 4 cut(s) | 146, 405, 478, 546 |
| MroXI | GAANNNNTTC | 1 cut(s) | 551 |
| MseI | TTAA | 8 cut(s) | 24, 192, 354, 495, 519, 543, 627, 675 |
| MslI | CAYNNNNRTG | 1 cut(s) | 263 |
| MspA1I | CMGCKG | 1 cut(s) | 41 |
| MspCI | CTTAAG | 1 cut(s) | 23 |
| MspR9I | CCNGG | 1 cut(s) | 666 |
| MvaI | CCWGG | 1 cut(s) | 666 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 654 |
| NdeII | GATC | 3 cut(s) | 31, 563, 736 |
| NlaIII | CATG | 3 cut(s) | 20, 268, 674 |
| NlaIV | GGNNCC | 1 cut(s) | 83 |
| NmuCI | GTSAC | 1 cut(s) | 578 |
| NspI | RCATGY | 1 cut(s) | 674 |
| PciI | ACATGT | 1 cut(s) | 670 |
| PdmI | GAANNNNTTC | 1 cut(s) | 551 |
| PflFI | GACNNNGTC | 1 cut(s) | 17 |
| PkrI | GCNGC | 1 cut(s) | 325 |
| PleI | GAGTC | 2 cut(s) | 175, 575 |
| PpsI | GAGTC | 2 cut(s) | 175, 575 |
| PpuMI | RGGWCCY | 1 cut(s) | 337 |
| PscI | ACATGT | 1 cut(s) | 670 |
| Psp5II | RGGWCCY | 1 cut(s) | 337 |
| Psp6I | CCWGG | 1 cut(s) | 664 |
| PspGI | CCWGG | 1 cut(s) | 664 |
| PspN4I | GGNNCC | 1 cut(s) | 83 |
| PspPI | GGNCC | 1 cut(s) | 337 |
| PspPPI | RGGWCCY | 1 cut(s) | 337 |
| PstNI | CAGNNNCTG | 1 cut(s) | 146 |
| PsuI | RGATCY | 2 cut(s) | 31, 736 |
| PsyI | GACNNNGTC | 1 cut(s) | 17 |
| PvuII | CAGCTG | 1 cut(s) | 41 |
| RsaI | GTAC | 2 cut(s) | 83, 372 |
| RsaNI | GTAC | 2 cut(s) | 82, 371 |
| RseI | CAYNNNNRTG | 1 cut(s) | 263 |
| SaqAI | TTAA | 8 cut(s) | 24, 192, 354, 495, 519, 543, 627, 675 |
| SatI | GCNGC | 1 cut(s) | 324 |
| Sau3AI | GATC | 3 cut(s) | 31, 563, 736 |
| Sau96I | GGNCC | 1 cut(s) | 337 |
| SchI | GAGTC | 2 cut(s) | 176, 575 |
| ScrFI | CCNGG | 1 cut(s) | 666 |
| SfaNI | GCATC | 2 cut(s) | 402, 519 |
| SfcI | CTRYAG | 1 cut(s) | 559 |
| SinI | GGWCC | 1 cut(s) | 337 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 263 |
| SmlI | CTYRAG | 2 cut(s) | 23, 332 |
| SmoI | CTYRAG | 2 cut(s) | 23, 332 |
| SspMI | CTAG | 3 cut(s) | 116, 180, 609 |
| StyD4I | CCNGG | 1 cut(s) | 664 |
| Tru1I | TTAA | 8 cut(s) | 24, 192, 354, 495, 519, 543, 627, 675 |
| Tru9I | TTAA | 8 cut(s) | 24, 192, 354, 495, 519, 543, 627, 675 |
| TseFI | GTSAC | 1 cut(s) | 578 |
| TseI | GCWGC | 1 cut(s) | 323 |
| Tsp45I | GTSAC | 1 cut(s) | 578 |
| TspDTI | ATGAA | 6 cut(s) | 140, 263, 281, 320, 471, 725 |
| Tth111I | GACNNNGTC | 1 cut(s) | 17 |
| Vha464I | CTTAAG | 1 cut(s) | 23 |
| VpaK11BI | GGWCC | 1 cut(s) | 337 |
| XapI | RAATTY | 4 cut(s) | 209, 385, 551, 622 |
| XceI | RCATGY | 1 cut(s) | 674 |
| XmiI | GTMKAC | 1 cut(s) | 160 |
| XmnI | GAANNNNTTC | 1 cut(s) | 551 |
| XspI | CTAG | 3 cut(s) | 116, 180, 609 |