gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 127 |
| AclWI | GGATC | 1 cut(s) | 532 |
| AcsI | RAATTY | 1 cut(s) | 245 |
| AfaI | GTAC | 1 cut(s) | 203 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 271 |
| AflII | CTTAAG | 1 cut(s) | 257 |
| AgsI | TTSAA | 1 cut(s) | 520 |
| AhlI | ACTAGT | 1 cut(s) | 41 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 500, 532 |
| AleI | CACNNNNGTG | 1 cut(s) | 446 |
| AluBI | AGCT | 6 cut(s) | 37, 92, 230, 348, 385, 496 |
| AluI | AGCT | 6 cut(s) | 37, 92, 230, 348, 385, 496 |
| Alw21I | GWGCWC | 2 cut(s) | 300, 443 |
| Alw44I | GTGCAC | 1 cut(s) | 296 |
| AlwI | GGATC | 1 cut(s) | 532 |
| ApaLI | GTGCAC | 1 cut(s) | 296 |
| ApeKI | GCWGC | 1 cut(s) | 227 |
| ApoI | RAATTY | 1 cut(s) | 245 |
| AspS9I | GGNCC | 3 cut(s) | 4, 262, 342 |
| AvaII | GGWCC | 3 cut(s) | 4, 262, 342 |
| BaeGI | GKGCMC | 1 cut(s) | 300 |
| Bbv12I | GWGCWC | 2 cut(s) | 300, 443 |
| BbvCI | CCTCAGC | 1 cut(s) | 222 |
| BbvI | GCAGC | 1 cut(s) | 239 |
| BccI | CCATC | 2 cut(s) | 94, 521 |
| BcuI | ACTAGT | 1 cut(s) | 41 |
| BfaI | CTAG | 3 cut(s) | 42, 167, 231 |
| BfrI | CTTAAG | 1 cut(s) | 257 |
| BisI | GCNGC | 1 cut(s) | 228 |
| BlsI | GCNGC | 1 cut(s) | 229 |
| Bme18I | GGWCC | 3 cut(s) | 4, 262, 342 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 262, 342 |
| BmiI | GGNNCC | 1 cut(s) | 374 |
| BmrI | ACTGGG | 1 cut(s) | 214 |
| BmuI | ACTGGG | 1 cut(s) | 214 |
| Bpu10I | CCTNAGC | 1 cut(s) | 222 |
| BpuEI | CTTGAG | 2 cut(s) | 362, 482 |
| BsaJI | CCNNGG | 1 cut(s) | 171 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 271 |
| Bse1I | ACTGG | 1 cut(s) | 209 |
| BseDI | CCNNGG | 1 cut(s) | 171 |
| BseGI | GGATG | 1 cut(s) | 28 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BseMII | CTCAG | 4 cut(s) | 9, 213, 371, 459 |
| BseNI | ACTGG | 1 cut(s) | 209 |
| BseRI | GAGGAG | 1 cut(s) | 422 |
| BseSI | GKGCMC | 1 cut(s) | 300 |
| BseXI | GCAGC | 1 cut(s) | 239 |
| BsgI | GTGCAG | 1 cut(s) | 288 |
| BsiHKAI | GWGCWC | 2 cut(s) | 300, 443 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BsmI | GAATGC | 1 cut(s) | 310 |
| Bsp1286I | GDGCHC | 2 cut(s) | 300, 443 |
| Bsp143I | GATC | 2 cut(s) | 163, 524 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspCNI | CTCAG | 4 cut(s) | 10, 214, 370, 458 |
| BspHI | TCATGA | 2 cut(s) | 193, 533 |
| BspLI | GGNNCC | 1 cut(s) | 374 |
| BspPI | GGATC | 1 cut(s) | 532 |
| BspTI | CTTAAG | 1 cut(s) | 257 |
| BsrI | ACTGG | 1 cut(s) | 209 |
| BssECI | CCNNGG | 1 cut(s) | 171 |
| BssMI | GATC | 2 cut(s) | 163, 524 |
| BssT1I | CCWWGG | 1 cut(s) | 171 |
| Bst4CI | ACNGT | 1 cut(s) | 139 |
| Bst6I | CTCTTC | 1 cut(s) | 54 |
| BstAFI | CTTAAG | 1 cut(s) | 257 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 316 |
| BstC8I | GCNNGC | 1 cut(s) | 237 |
| BstDEI | CTNAG | 7 cut(s) | 18, 222, 338, 357, 445, 468, 492 |
| BstDSI | CCRYGG | 1 cut(s) | 171 |
| BstF5I | GGATG | 1 cut(s) | 28 |
| BstKTI | GATC | 2 cut(s) | 166, 527 |
| BstMBI | GATC | 2 cut(s) | 163, 524 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 227, 236, 316 |
| BstSLI | GKGCMC | 1 cut(s) | 300 |
| BstV1I | GCAGC | 1 cut(s) | 239 |
| BstX2I | RGATCY | 1 cut(s) | 524 |
| BstYI | RGATCY | 1 cut(s) | 524 |
| BtgI | CCRYGG | 1 cut(s) | 171 |
| BtsCI | GGATG | 1 cut(s) | 28 |
| BtsI | GCAGTG | 2 cut(s) | 300, 305 |
| BtsIMutI | CAGTG | 4 cut(s) | 279, 300, 305, 453 |
| Cac8I | GCNNGC | 1 cut(s) | 237 |
| CciI | TCATGA | 2 cut(s) | 193, 533 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 262, 342 |
| Csp6I | GTAC | 1 cut(s) | 202 |
| CviAII | CATG | 6 cut(s) | 127, 172, 194, 271, 415, 534 |
| CviQI | GTAC | 1 cut(s) | 202 |
| DdeI | CTNAG | 7 cut(s) | 18, 222, 338, 357, 445, 468, 492 |
| DpnI | GATC | 2 cut(s) | 165, 526 |
| DpnII | GATC | 2 cut(s) | 163, 524 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 127 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 127 |
| Eam1104I | CTCTTC | 1 cut(s) | 54 |
| EarI | CTCTTC | 1 cut(s) | 54 |
| Eco130I | CCWWGG | 1 cut(s) | 171 |
| Eco47I | GGWCC | 3 cut(s) | 4, 262, 342 |
| EcoO109I | RGGNCCY | 1 cut(s) | 262 |
| EcoT14I | CCWWGG | 1 cut(s) | 171 |
| ErhI | CCWWGG | 1 cut(s) | 171 |
| FaeI | CATG | 6 cut(s) | 130, 175, 197, 274, 418, 537 |
| FatI | CATG | 6 cut(s) | 126, 171, 193, 270, 414, 533 |
| Fnu4HI | GCNGC | 1 cut(s) | 228 |
| FokI | GGATG | 1 cut(s) | 35 |
| Fsp4HI | GCNGC | 1 cut(s) | 228 |
| FspBI | CTAG | 3 cut(s) | 42, 167, 231 |
| GluI | GCNGC | 1 cut(s) | 228 |
| Hin1II | CATG | 6 cut(s) | 130, 175, 197, 274, 418, 537 |
| HindIII | AAGCTT | 1 cut(s) | 35 |
| HinfI | GANTC | 2 cut(s) | 434, 484 |
| Hpy166II | GTNNAC | 2 cut(s) | 298, 451 |
| Hpy188I | TCNGA | 3 cut(s) | 55, 133, 360 |
| Hpy188III | TCNNGA | 2 cut(s) | 194, 534 |
| Hpy8I | GTNNAC | 2 cut(s) | 298, 451 |
| HpyAV | CCTTC | 2 cut(s) | 355, 418 |
| HpyCH4III | ACNGT | 1 cut(s) | 139 |
| HpyCH4V | TGCA | 4 cut(s) | 12, 298, 305, 310 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 227, 236, 316 |
| HpyF3I | CTNAG | 7 cut(s) | 18, 222, 338, 357, 445, 468, 492 |
| Hsp92II | CATG | 6 cut(s) | 130, 175, 197, 274, 418, 537 |
| Kzo9I | GATC | 2 cut(s) | 163, 524 |
| LmnI | GCTCC | 2 cut(s) | 372, 382 |
| LpnPI | CCDG | 6 cut(s) | 42, 174, 190, 221, 358, 494 |
| Lsp1109I | GCAGC | 1 cut(s) | 239 |
| MaeI | CTAG | 3 cut(s) | 42, 167, 231 |
| MaeIII | GTNAC | 1 cut(s) | 277 |
| MalI | GATC | 2 cut(s) | 165, 526 |
| MboI | GATC | 2 cut(s) | 163, 524 |
| MboII | GAAGA | 4 cut(s) | 71, 167, 484, 508 |
| MflI | RGATCY | 1 cut(s) | 524 |
| MhlI | GDGCHC | 2 cut(s) | 300, 443 |
| MluCI | AATT | 1 cut(s) | 245 |
| MlyI | GAGTC | 1 cut(s) | 443 |
| MnlI | CCTC | 8 cut(s) | 13, 137, 217, 275, 386, 400, 403, 454 |
| MseI | TTAA | 3 cut(s) | 75, 249, 258 |
| MslI | CAYNNNNRTG | 1 cut(s) | 446 |
| MspCI | CTTAAG | 1 cut(s) | 257 |
| Mva1269I | GAATGC | 1 cut(s) | 310 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 227, 236, 316 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeII | GATC | 2 cut(s) | 163, 524 |
| NlaIII | CATG | 6 cut(s) | 130, 175, 197, 274, 418, 537 |
| NlaIV | GGNNCC | 1 cut(s) | 374 |
| NmuCI | GTSAC | 1 cut(s) | 277 |
| OliI | CACNNNNGTG | 1 cut(s) | 446 |
| PagI | TCATGA | 2 cut(s) | 193, 533 |
| PctI | GAATGC | 1 cut(s) | 310 |
| PfeI | GAWTC | 1 cut(s) | 484 |
| PkrI | GCNGC | 1 cut(s) | 229 |
| PleI | GAGTC | 1 cut(s) | 442 |
| PpsI | GAGTC | 1 cut(s) | 442 |
| PpuMI | RGGWCCY | 1 cut(s) | 262 |
| Psp5II | RGGWCCY | 1 cut(s) | 262 |
| PspN4I | GGNNCC | 1 cut(s) | 374 |
| PspPI | GGNCC | 3 cut(s) | 4, 262, 342 |
| PspPPI | RGGWCCY | 1 cut(s) | 262 |
| PsuI | RGATCY | 1 cut(s) | 524 |
| RsaI | GTAC | 1 cut(s) | 203 |
| RsaNI | GTAC | 1 cut(s) | 202 |
| RseI | CAYNNNNRTG | 1 cut(s) | 446 |
| SaqAI | TTAA | 3 cut(s) | 75, 249, 258 |
| SatI | GCNGC | 1 cut(s) | 228 |
| Sau3AI | GATC | 2 cut(s) | 163, 524 |
| Sau96I | GGNCC | 3 cut(s) | 4, 262, 342 |
| SchI | GAGTC | 1 cut(s) | 443 |
| SduI | GDGCHC | 2 cut(s) | 300, 443 |
| SinI | GGWCC | 3 cut(s) | 4, 262, 342 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 446 |
| SmlI | CTYRAG | 3 cut(s) | 257, 377, 497 |
| SmoI | CTYRAG | 3 cut(s) | 257, 377, 497 |
| SpeI | ACTAGT | 1 cut(s) | 41 |
| Sse9I | AATT | 1 cut(s) | 245 |
| SspI | AATATT | 1 cut(s) | 71 |
| SspMI | CTAG | 3 cut(s) | 42, 167, 231 |
| StyI | CCWWGG | 1 cut(s) | 171 |
| TaaI | ACNGT | 1 cut(s) | 139 |
| TaqI | TCGA | 1 cut(s) | 437 |
| TasI | AATT | 1 cut(s) | 245 |
| TatI | WGTACW | 1 cut(s) | 201 |
| TfiI | GAWTC | 1 cut(s) | 484 |
| Tru1I | TTAA | 3 cut(s) | 75, 249, 258 |
| Tru9I | TTAA | 3 cut(s) | 75, 249, 258 |
| TscAI | CASTG | 4 cut(s) | 286, 307, 312, 453 |
| TseFI | GTSAC | 1 cut(s) | 277 |
| TseI | GCWGC | 1 cut(s) | 227 |
| Tsp45I | GTSAC | 1 cut(s) | 277 |
| TspDTI | ATGAA | 3 cut(s) | 39, 72, 182 |
| TspRI | CASTG | 4 cut(s) | 286, 307, 312, 453 |
| Vha464I | CTTAAG | 1 cut(s) | 257 |
| VneI | GTGCAC | 1 cut(s) | 296 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 262, 342 |
| XapI | RAATTY | 1 cut(s) | 245 |
| XspI | CTAG | 3 cut(s) | 42, 167, 231 |