gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 36 - 195 | 3.8e-16 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 169 |
| AclWI | GGATC | 2 cut(s) | 140, 153 |
| AcuI | CTGAAG | 1 cut(s) | 276 |
| AfaI | GTAC | 3 cut(s) | 326, 413, 539 |
| AflII | CTTAAG | 1 cut(s) | 611 |
| AjnI | CCWGG | 2 cut(s) | 108, 117 |
| AluBI | AGCT | 2 cut(s) | 260, 684 |
| AluI | AGCT | 2 cut(s) | 260, 684 |
| Alw26I | GTCTC | 2 cut(s) | 87, 593 |
| AlwI | GGATC | 2 cut(s) | 140, 153 |
| AoxI | GGCC | 1 cut(s) | 225 |
| ApeKI | GCWGC | 1 cut(s) | 164 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 779 |
| AsuHPI | GGTGA | 1 cut(s) | 622 |
| BamHI | GGATCC | 1 cut(s) | 145 |
| BbvI | GCAGC | 1 cut(s) | 151 |
| BccI | CCATC | 3 cut(s) | 590, 728, 815 |
| BciT130I | CCWGG | 2 cut(s) | 110, 119 |
| BclI | TGATCA | 1 cut(s) | 372 |
| BcoDI | GTCTC | 2 cut(s) | 87, 593 |
| BfrI | CTTAAG | 1 cut(s) | 611 |
| BfuAI | ACCTGC | 1 cut(s) | 169 |
| BisI | GCNGC | 1 cut(s) | 165 |
| BlsI | GCNGC | 1 cut(s) | 166 |
| Bme1390I | CCNGG | 2 cut(s) | 110, 119 |
| BmiI | GGNNCC | 3 cut(s) | 147, 159, 719 |
| BmrFI | CCNGG | 2 cut(s) | 110, 119 |
| BmrI | ACTGGG | 1 cut(s) | 360 |
| BmsI | GCATC | 2 cut(s) | 51, 411 |
| BmuI | ACTGGG | 1 cut(s) | 360 |
| BpmI | CTGGAG | 1 cut(s) | 580 |
| BpuEI | CTTGAG | 1 cut(s) | 305 |
| BsaJI | CCNNGG | 1 cut(s) | 109 |
| Bse1I | ACTGG | 3 cut(s) | 159, 355, 563 |
| Bse3DI | GCAATG | 3 cut(s) | 30, 255, 312 |
| BseBI | CCWGG | 2 cut(s) | 110, 119 |
| BseDI | CCNNGG | 1 cut(s) | 109 |
| BseMI | GCAATG | 3 cut(s) | 30, 255, 312 |
| BseMII | CTCAG | 1 cut(s) | 594 |
| BseNI | ACTGG | 3 cut(s) | 159, 355, 563 |
| BseRI | GAGGAG | 1 cut(s) | 611 |
| BseXI | GCAGC | 1 cut(s) | 151 |
| BshFI | GGCC | 1 cut(s) | 227 |
| BsmAI | GTCTC | 2 cut(s) | 87, 593 |
| BsnI | GGCC | 1 cut(s) | 227 |
| Bsp1407I | TGTACA | 1 cut(s) | 537 |
| Bsp143I | GATC | 3 cut(s) | 145, 231, 372 |
| BspANI | GGCC | 1 cut(s) | 227 |
| BspCNI | CTCAG | 1 cut(s) | 595 |
| BspHI | TCATGA | 1 cut(s) | 360 |
| BspLI | GGNNCC | 3 cut(s) | 147, 159, 719 |
| BspMI | ACCTGC | 1 cut(s) | 169 |
| BspPI | GGATC | 2 cut(s) | 140, 153 |
| BspTI | CTTAAG | 1 cut(s) | 611 |
| BsrDI | GCAATG | 3 cut(s) | 30, 255, 312 |
| BsrGI | TGTACA | 1 cut(s) | 537 |
| BsrI | ACTGG | 3 cut(s) | 159, 355, 563 |
| BssECI | CCNNGG | 1 cut(s) | 109 |
| BssMI | GATC | 3 cut(s) | 145, 231, 372 |
| Bst2UI | CCWGG | 2 cut(s) | 110, 119 |
| Bst4CI | ACNGT | 5 cut(s) | 284, 436, 466, 516, 818 |
| BstAFI | CTTAAG | 1 cut(s) | 611 |
| BstAUI | TGTACA | 1 cut(s) | 537 |
| BstC8I | GCNNGC | 1 cut(s) | 175 |
| BstDEI | CTNAG | 3 cut(s) | 603, 675, 744 |
| BstKTI | GATC | 3 cut(s) | 148, 234, 375 |
| BstMAI | GTCTC | 2 cut(s) | 87, 593 |
| BstMBI | GATC | 3 cut(s) | 145, 231, 372 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 170, 786 |
| BstNI | CCWGG | 2 cut(s) | 110, 119 |
| BstSCI | CCNGG | 2 cut(s) | 108, 117 |
| BstV1I | GCAGC | 1 cut(s) | 151 |
| BstX2I | RGATCY | 1 cut(s) | 145 |
| BstYI | RGATCY | 1 cut(s) | 145 |
| BsuRI | GGCC | 1 cut(s) | 227 |
| BtsI | GCAGTG | 1 cut(s) | 503 |
| BtsIMutI | CAGTG | 5 cut(s) | 152, 209, 289, 432, 503 |
| BveI | ACCTGC | 1 cut(s) | 169 |
| Cac8I | GCNNGC | 1 cut(s) | 175 |
| CciI | TCATGA | 1 cut(s) | 360 |
| Csp6I | GTAC | 3 cut(s) | 325, 412, 538 |
| CviAII | CATG | 5 cut(s) | 131, 238, 361, 643, 764 |
| CviJI | RGCY | 7 cut(s) | 227, 260, 344, 454, 667, 684, 838 |
| CviKI_1 | RGCY | 7 cut(s) | 227, 260, 344, 454, 667, 684, 838 |
| CviQI | GTAC | 3 cut(s) | 325, 412, 538 |
| DdeI | CTNAG | 3 cut(s) | 603, 675, 744 |
| DpnI | GATC | 3 cut(s) | 147, 233, 374 |
| DpnII | GATC | 3 cut(s) | 145, 231, 372 |
| Eco32I | GATATC | 1 cut(s) | 524 |
| Eco57I | CTGAAG | 1 cut(s) | 276 |
| EcoRII | CCWGG | 2 cut(s) | 108, 117 |
| EcoRV | GATATC | 1 cut(s) | 524 |
| EcoT22I | ATGCAT | 1 cut(s) | 30 |
| FaeI | CATG | 5 cut(s) | 134, 241, 364, 646, 767 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 668, 700 |
| FatI | CATG | 5 cut(s) | 130, 237, 360, 642, 763 |
| FbaI | TGATCA | 1 cut(s) | 372 |
| Fnu4HI | GCNGC | 1 cut(s) | 165 |
| Fsp4HI | GCNGC | 1 cut(s) | 165 |
| GluI | GCNGC | 1 cut(s) | 165 |
| GsuI | CTGGAG | 1 cut(s) | 580 |
| HaeIII | GGCC | 1 cut(s) | 227 |
| Hin1II | CATG | 5 cut(s) | 134, 241, 364, 646, 767 |
| HindIII | AAGCTT | 1 cut(s) | 682 |
| HinfI | GANTC | 5 cut(s) | 114, 332, 355, 473, 562 |
| HphI | GGTGA | 1 cut(s) | 622 |
| Hpy188I | TCNGA | 5 cut(s) | 337, 407, 528, 567, 733 |
| Hpy188III | TCNNGA | 4 cut(s) | 361, 593, 808, 859 |
| HpyAV | CCTTC | 9 cut(s) | 82, 133, 181, 238, 259, 442, 544, 787, 805 |
| HpyCH4III | ACNGT | 5 cut(s) | 284, 436, 466, 516, 818 |
| HpyCH4V | TGCA | 6 cut(s) | 28, 237, 293, 317, 421, 789 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 170, 786 |
| HpyF3I | CTNAG | 3 cut(s) | 603, 675, 744 |
| Hsp92II | CATG | 5 cut(s) | 134, 241, 364, 646, 767 |
| Ksp22I | TGATCA | 1 cut(s) | 372 |
| Kzo9I | GATC | 3 cut(s) | 145, 231, 372 |
| LmnI | GCTCC | 1 cut(s) | 399 |
| Lsp1109I | GCAGC | 1 cut(s) | 151 |
| LweI | GCATC | 2 cut(s) | 51, 411 |
| MaeIII | GTNAC | 3 cut(s) | 284, 460, 628 |
| MalI | GATC | 3 cut(s) | 147, 233, 374 |
| MboI | GATC | 3 cut(s) | 145, 231, 372 |
| MboII | GAAGA | 3 cut(s) | 253, 482, 775 |
| MflI | RGATCY | 1 cut(s) | 145 |
| MluCI | AATT | 7 cut(s) | 101, 307, 426, 443, 499, 658, 832 |
| MlyI | GAGTC | 1 cut(s) | 571 |
| MmeI | TCCRAC | 2 cut(s) | 418, 778 |
| MnlI | CCTC | 7 cut(s) | 136, 263, 375, 589, 598, 611, 678 |
| Mph1103I | ATGCAT | 1 cut(s) | 30 |
| MroXI | GAANNNNTTC | 1 cut(s) | 779 |
| MseI | TTAA | 4 cut(s) | 456, 498, 612, 636 |
| MspCI | CTTAAG | 1 cut(s) | 611 |
| MspR9I | CCNGG | 2 cut(s) | 110, 119 |
| MvaI | CCWGG | 2 cut(s) | 110, 119 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 170, 786 |
| NdeII | GATC | 3 cut(s) | 145, 231, 372 |
| NlaIII | CATG | 5 cut(s) | 134, 241, 364, 646, 767 |
| NlaIV | GGNNCC | 3 cut(s) | 147, 159, 719 |
| NmuCI | GTSAC | 3 cut(s) | 284, 460, 628 |
| NsiI | ATGCAT | 1 cut(s) | 30 |
| PagI | TCATGA | 1 cut(s) | 360 |
| PdmI | GAANNNNTTC | 1 cut(s) | 779 |
| PfeI | GAWTC | 4 cut(s) | 114, 332, 355, 473 |
| PfoI | TCCNGGA | 1 cut(s) | 117 |
| PkrI | GCNGC | 1 cut(s) | 166 |
| PleI | GAGTC | 1 cut(s) | 570 |
| PpsI | GAGTC | 1 cut(s) | 570 |
| Psp6I | CCWGG | 2 cut(s) | 108, 117 |
| PspGI | CCWGG | 2 cut(s) | 108, 117 |
| PspN4I | GGNNCC | 3 cut(s) | 147, 159, 719 |
| PsuI | RGATCY | 1 cut(s) | 145 |
| RsaI | GTAC | 3 cut(s) | 326, 413, 539 |
| RsaNI | GTAC | 3 cut(s) | 325, 412, 538 |
| SaqAI | TTAA | 4 cut(s) | 456, 498, 612, 636 |
| SatI | GCNGC | 1 cut(s) | 165 |
| Sau3AI | GATC | 3 cut(s) | 145, 231, 372 |
| SchI | GAGTC | 1 cut(s) | 571 |
| ScrFI | CCNGG | 2 cut(s) | 110, 119 |
| SetI | ASST | 8 cut(s) | 111, 163, 262, 386, 609, 622, 686, 798 |
| SfaNI | GCATC | 2 cut(s) | 51, 411 |
| SmlI | CTYRAG | 2 cut(s) | 320, 611 |
| SmoI | CTYRAG | 2 cut(s) | 320, 611 |
| Sse9I | AATT | 7 cut(s) | 101, 307, 426, 443, 499, 658, 832 |
| StyD4I | CCNGG | 2 cut(s) | 108, 117 |
| TaaI | ACNGT | 5 cut(s) | 284, 436, 466, 516, 818 |
| TaqI | TCGA | 1 cut(s) | 99 |
| TasI | AATT | 7 cut(s) | 101, 307, 426, 443, 499, 658, 832 |
| TatI | WGTACW | 3 cut(s) | 324, 411, 537 |
| TfiI | GAWTC | 4 cut(s) | 114, 332, 355, 473 |
| Tru1I | TTAA | 4 cut(s) | 456, 498, 612, 636 |
| Tru9I | TTAA | 4 cut(s) | 456, 498, 612, 636 |
| TscAI | CASTG | 5 cut(s) | 159, 209, 289, 439, 510 |
| TseFI | GTSAC | 3 cut(s) | 284, 460, 628 |
| TseI | GCWGC | 1 cut(s) | 164 |
| Tsp45I | GTSAC | 3 cut(s) | 284, 460, 628 |
| TspDTI | ATGAA | 5 cut(s) | 254, 377, 465, 585, 699 |
| TspRI | CASTG | 5 cut(s) | 159, 209, 289, 439, 510 |
| Vha464I | CTTAAG | 1 cut(s) | 611 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 640 |
| XmnI | GAANNNNTTC | 1 cut(s) | 779 |
| Zsp2I | ATGCAT | 1 cut(s) | 30 |