gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 75 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AcuI | CTGAAG | 1 cut(s) | 359 |
| AgsI | TTSAA | 1 cut(s) | 150 |
| AluBI | AGCT | 6 cut(s) | 90, 104, 166, 221, 256, 301 |
| AluI | AGCT | 6 cut(s) | 90, 104, 166, 221, 256, 301 |
| Alw21I | GWGCWC | 2 cut(s) | 53, 291 |
| AlwI | GGATC | 1 cut(s) | 12 |
| Ama87I | CYCGRG | 1 cut(s) | 316 |
| ApeKI | GCWGC | 1 cut(s) | 227 |
| AvaI | CYCGRG | 1 cut(s) | 316 |
| Bbv12I | GWGCWC | 2 cut(s) | 53, 291 |
| BbvCI | CCTCAGC | 2 cut(s) | 222, 323 |
| BbvI | GCAGC | 1 cut(s) | 214 |
| BfaI | CTAG | 3 cut(s) | 182, 231, 436 |
| BfmI | CTRYAG | 1 cut(s) | 394 |
| BisI | GCNGC | 1 cut(s) | 228 |
| BlsI | GCNGC | 1 cut(s) | 229 |
| BmeT110I | CYCGRG | 1 cut(s) | 316 |
| BpmI | CTGGAG | 1 cut(s) | 278 |
| Bpu10I | CCTNAGC | 2 cut(s) | 222, 323 |
| BsaJI | CCNNGG | 1 cut(s) | 171 |
| Bse3DI | GCAATG | 1 cut(s) | 380 |
| BseDI | CCNNGG | 1 cut(s) | 171 |
| BseMI | GCAATG | 1 cut(s) | 380 |
| BseMII | CTCAG | 4 cut(s) | 36, 213, 314, 368 |
| BseXI | GCAGC | 1 cut(s) | 214 |
| BsiHKAI | GWGCWC | 2 cut(s) | 53, 291 |
| BsiHKCI | CYCGRG | 1 cut(s) | 316 |
| BsoBI | CYCGRG | 1 cut(s) | 316 |
| Bsp1286I | GDGCHC | 2 cut(s) | 53, 291 |
| Bsp143I | GATC | 1 cut(s) | 4 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspCNI | CTCAG | 4 cut(s) | 37, 214, 315, 367 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BsrDI | GCAATG | 1 cut(s) | 380 |
| BssECI | CCNNGG | 1 cut(s) | 171 |
| BssMI | GATC | 1 cut(s) | 4 |
| BssT1I | CCWWGG | 1 cut(s) | 171 |
| Bst4CI | ACNGT | 2 cut(s) | 139, 398 |
| BstC8I | GCNNGC | 1 cut(s) | 168 |
| BstDEI | CTNAG | 5 cut(s) | 45, 222, 323, 354, 404 |
| BstDSI | CCRYGG | 1 cut(s) | 171 |
| BstKTI | GATC | 1 cut(s) | 7 |
| BstMBI | GATC | 1 cut(s) | 4 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 227 |
| BstNSI | RCATGY | 1 cut(s) | 368 |
| BstSFI | CTRYAG | 1 cut(s) | 394 |
| BstV1I | GCAGC | 1 cut(s) | 214 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| BtgI | CCRYGG | 1 cut(s) | 171 |
| BtsIMutI | CAGTG | 2 cut(s) | 42, 135 |
| Cac8I | GCNNGC | 1 cut(s) | 168 |
| CviAII | CATG | 5 cut(s) | 127, 172, 337, 365, 419 |
| DdeI | CTNAG | 5 cut(s) | 45, 222, 323, 354, 404 |
| DpnI | GATC | 1 cut(s) | 6 |
| DpnII | GATC | 1 cut(s) | 4 |
| Eco130I | CCWWGG | 1 cut(s) | 171 |
| Eco57I | CTGAAG | 1 cut(s) | 359 |
| Eco88I | CYCGRG | 1 cut(s) | 316 |
| EcoT14I | CCWWGG | 1 cut(s) | 171 |
| ErhI | CCWWGG | 1 cut(s) | 171 |
| FaeI | CATG | 5 cut(s) | 130, 175, 340, 368, 422 |
| FatI | CATG | 5 cut(s) | 126, 171, 336, 364, 418 |
| Fnu4HI | GCNGC | 1 cut(s) | 228 |
| Fsp4HI | GCNGC | 1 cut(s) | 228 |
| FspBI | CTAG | 3 cut(s) | 182, 231, 436 |
| GluI | GCNGC | 1 cut(s) | 228 |
| GsuI | CTGGAG | 1 cut(s) | 278 |
| Hin1II | CATG | 5 cut(s) | 130, 175, 340, 368, 422 |
| HinfI | GANTC | 2 cut(s) | 350, 428 |
| Hpy188I | TCNGA | 1 cut(s) | 133 |
| Hpy188III | TCNNGA | 1 cut(s) | 267 |
| HpyCH4III | ACNGT | 2 cut(s) | 139, 398 |
| HpyCH4V | TGCA | 1 cut(s) | 364 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 227 |
| HpyF3I | CTNAG | 5 cut(s) | 45, 222, 323, 354, 404 |
| Hsp92II | CATG | 5 cut(s) | 130, 175, 340, 368, 422 |
| Kzo9I | GATC | 1 cut(s) | 4 |
| LmnI | GCTCC | 3 cut(s) | 95, 286, 298 |
| LpnPI | CCDG | 5 cut(s) | 82, 174, 242, 252, 341 |
| Lsp1109I | GCAGC | 1 cut(s) | 214 |
| MaeI | CTAG | 3 cut(s) | 182, 231, 436 |
| MaeIII | GTNAC | 3 cut(s) | 112, 212, 398 |
| MalI | GATC | 1 cut(s) | 6 |
| MboI | GATC | 1 cut(s) | 4 |
| MboII | GAAGA | 2 cut(s) | 68, 71 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MhlI | GDGCHC | 2 cut(s) | 53, 291 |
| MlyI | GAGTC | 2 cut(s) | 344, 437 |
| MmeI | TCCRAC | 1 cut(s) | 117 |
| MnlI | CCTC | 7 cut(s) | 133, 217, 276, 312, 318, 320, 421 |
| MseI | TTAA | 2 cut(s) | 249, 345 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 227 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeII | GATC | 1 cut(s) | 4 |
| NlaIII | CATG | 5 cut(s) | 130, 175, 340, 368, 422 |
| NmuCI | GTSAC | 2 cut(s) | 112, 212 |
| NspI | RCATGY | 1 cut(s) | 368 |
| PaeR7I | CTCGAG | 1 cut(s) | 316 |
| PkrI | GCNGC | 1 cut(s) | 229 |
| PleI | GAGTC | 2 cut(s) | 344, 436 |
| PpsI | GAGTC | 2 cut(s) | 344, 436 |
| PsiI | TTATAA | 1 cut(s) | 75 |
| PspXI | VCTCGAGB | 1 cut(s) | 316 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| SaqAI | TTAA | 2 cut(s) | 249, 345 |
| SatI | GCNGC | 1 cut(s) | 228 |
| Sau3AI | GATC | 1 cut(s) | 4 |
| SchI | GAGTC | 2 cut(s) | 344, 437 |
| SduI | GDGCHC | 2 cut(s) | 53, 291 |
| SfcI | CTRYAG | 1 cut(s) | 394 |
| Sfr274I | CTCGAG | 1 cut(s) | 316 |
| SlaI | CTCGAG | 1 cut(s) | 316 |
| SmlI | CTYRAG | 1 cut(s) | 316 |
| SmoI | CTYRAG | 1 cut(s) | 316 |
| SspI | AATATT | 1 cut(s) | 71 |
| SspMI | CTAG | 3 cut(s) | 182, 231, 436 |
| StyI | CCWWGG | 1 cut(s) | 171 |
| TaaI | ACNGT | 2 cut(s) | 139, 398 |
| TaqI | TCGA | 1 cut(s) | 317 |
| Tru1I | TTAA | 2 cut(s) | 249, 345 |
| Tru9I | TTAA | 2 cut(s) | 249, 345 |
| TscAI | CASTG | 2 cut(s) | 49, 142 |
| TseFI | GTSAC | 2 cut(s) | 112, 212 |
| TseI | GCWGC | 1 cut(s) | 227 |
| Tsp45I | GTSAC | 2 cut(s) | 112, 212 |
| TspRI | CASTG | 2 cut(s) | 49, 142 |
| XceI | RCATGY | 1 cut(s) | 368 |
| XhoI | CTCGAG | 1 cut(s) | 316 |
| XspI | CTAG | 3 cut(s) | 182, 231, 436 |