gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 5 - 163 | 1.5e-20 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 141 |
| AcuI | CTGAAG | 2 cut(s) | 51, 447 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 117 |
| AluBI | AGCT | 2 cut(s) | 451, 479 |
| AluI | AGCT | 2 cut(s) | 451, 479 |
| Alw21I | GWGCWC | 1 cut(s) | 291 |
| Alw26I | GTCTC | 1 cut(s) | 226 |
| AlwI | GGATC | 1 cut(s) | 141 |
| AspS9I | GGNCC | 3 cut(s) | 4, 307, 438 |
| AsuNHI | GCTAGC | 1 cut(s) | 385 |
| AvaII | GGWCC | 3 cut(s) | 4, 307, 438 |
| AxyI | CCTNAGG | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 1 cut(s) | 291 |
| BccI | CCATC | 1 cut(s) | 298 |
| BcoDI | GTCTC | 1 cut(s) | 226 |
| BfaI | CTAG | 3 cut(s) | 206, 386, 480 |
| BfmI | CTRYAG | 2 cut(s) | 73, 394 |
| Bme18I | GGWCC | 3 cut(s) | 4, 307, 438 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 307, 438 |
| BmiI | GGNNCC | 1 cut(s) | 440 |
| BmsI | GCATC | 2 cut(s) | 31, 474 |
| BmtI | GCTAGC | 1 cut(s) | 389 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 176, 208 |
| BpuEI | CTTGAG | 1 cut(s) | 395 |
| BsaBI | GATNNNNATC | 1 cut(s) | 51 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 117 |
| Bse21I | CCTNAGG | 1 cut(s) | 57 |
| Bse8I | GATNNNNATC | 1 cut(s) | 51 |
| BseGI | GGATG | 1 cut(s) | 355 |
| BseJI | GATNNNNATC | 1 cut(s) | 51 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 117 |
| BseMII | CTCAG | 2 cut(s) | 48, 186 |
| BsiHKAI | GWGCWC | 1 cut(s) | 291 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 117 |
| BsmAI | GTCTC | 1 cut(s) | 226 |
| Bsp1286I | GDGCHC | 1 cut(s) | 291 |
| Bsp143I | GATC | 1 cut(s) | 146 |
| BspCNI | CTCAG | 2 cut(s) | 49, 187 |
| BspHI | TCATGA | 1 cut(s) | 294 |
| BspLI | GGNNCC | 1 cut(s) | 440 |
| BspOI | GCTAGC | 1 cut(s) | 389 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BssMI | GATC | 1 cut(s) | 146 |
| Bst4CI | ACNGT | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 1 cut(s) | 387 |
| BstDEI | CTNAG | 2 cut(s) | 57, 195 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 115 |
| BstF5I | GGATG | 1 cut(s) | 355 |
| BstKTI | GATC | 1 cut(s) | 149 |
| BstMAI | GTCTC | 1 cut(s) | 226 |
| BstMBI | GATC | 1 cut(s) | 146 |
| BstSFI | CTRYAG | 2 cut(s) | 73, 394 |
| BstX2I | RGATCY | 1 cut(s) | 146 |
| BstYI | RGATCY | 1 cut(s) | 146 |
| Bsu36I | CCTNAGG | 1 cut(s) | 57 |
| BtsCI | GGATG | 1 cut(s) | 355 |
| BtsI | GCAGTG | 1 cut(s) | 380 |
| BtsIMutI | CAGTG | 1 cut(s) | 380 |
| Cac8I | GCNNGC | 1 cut(s) | 387 |
| CciI | TCATGA | 1 cut(s) | 294 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 307, 438 |
| CviAII | CATG | 3 cut(s) | 127, 256, 295 |
| CviJI | RGCY | 8 cut(s) | 71, 104, 188, 221, 322, 389, 451, 479 |
| CviKI_1 | RGCY | 8 cut(s) | 71, 104, 188, 221, 322, 389, 451, 479 |
| DdeI | CTNAG | 2 cut(s) | 57, 195 |
| DpnI | GATC | 1 cut(s) | 148 |
| DpnII | GATC | 1 cut(s) | 146 |
| Eco47I | GGWCC | 3 cut(s) | 4, 307, 438 |
| Eco57I | CTGAAG | 2 cut(s) | 51, 447 |
| Eco81I | CCTNAGG | 1 cut(s) | 57 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 115 |
| FaeI | CATG | 3 cut(s) | 130, 259, 298 |
| FaiI | YATR | 8 cut(s) | 75, 87, 128, 257, 296, 318, 396, 417 |
| FatI | CATG | 3 cut(s) | 126, 255, 294 |
| FokI | GGATG | 1 cut(s) | 362 |
| FspBI | CTAG | 3 cut(s) | 206, 386, 480 |
| Hin1II | CATG | 3 cut(s) | 130, 259, 298 |
| HindIII | AAGCTT | 1 cut(s) | 449 |
| HinfI | GANTC | 2 cut(s) | 134, 377 |
| Hpy188I | TCNGA | 2 cut(s) | 196, 427 |
| Hpy188III | TCNNGA | 3 cut(s) | 56, 206, 295 |
| HpyCH4III | ACNGT | 1 cut(s) | 92 |
| HpyCH4V | TGCA | 2 cut(s) | 12, 465 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 195 |
| Hsp92II | CATG | 3 cut(s) | 130, 259, 298 |
| Kzo9I | GATC | 1 cut(s) | 146 |
| LmnI | GCTCC | 1 cut(s) | 286 |
| LpnPI | CCDG | 8 cut(s) | 42, 69, 82, 174, 252, 341, 353, 455 |
| LweI | GCATC | 2 cut(s) | 31, 474 |
| MaeI | CTAG | 3 cut(s) | 206, 386, 480 |
| MaeIII | GTNAC | 2 cut(s) | 92, 378 |
| MalI | GATC | 1 cut(s) | 148 |
| MboI | GATC | 1 cut(s) | 146 |
| MboII | GAAGA | 2 cut(s) | 44, 440 |
| MflI | RGATCY | 1 cut(s) | 146 |
| MhlI | GDGCHC | 1 cut(s) | 291 |
| MluCI | AATT | 3 cut(s) | 35, 138, 313 |
| MlyI | GAGTC | 2 cut(s) | 128, 386 |
| MnlI | CCTC | 6 cut(s) | 17, 52, 178, 276, 433, 466 |
| MseI | TTAA | 4 cut(s) | 249, 312, 345, 486 |
| MslI | CAYNNNNRTG | 1 cut(s) | 299 |
| NdeII | GATC | 1 cut(s) | 146 |
| NheI | GCTAGC | 1 cut(s) | 385 |
| NlaIII | CATG | 3 cut(s) | 130, 259, 298 |
| NlaIV | GGNNCC | 1 cut(s) | 440 |
| NmuCI | GTSAC | 1 cut(s) | 378 |
| PagI | TCATGA | 1 cut(s) | 294 |
| PleI | GAGTC | 2 cut(s) | 128, 385 |
| PpsI | GAGTC | 2 cut(s) | 128, 385 |
| PspN4I | GGNNCC | 1 cut(s) | 440 |
| PspPI | GGNCC | 3 cut(s) | 4, 307, 438 |
| PsuI | RGATCY | 1 cut(s) | 146 |
| RseI | CAYNNNNRTG | 1 cut(s) | 299 |
| SaqAI | TTAA | 4 cut(s) | 249, 312, 345, 486 |
| Sau3AI | GATC | 1 cut(s) | 146 |
| Sau96I | GGNCC | 3 cut(s) | 4, 307, 438 |
| SchI | GAGTC | 2 cut(s) | 128, 386 |
| SduI | GDGCHC | 1 cut(s) | 291 |
| SfaNI | GCATC | 2 cut(s) | 31, 474 |
| SfcI | CTRYAG | 2 cut(s) | 73, 394 |
| SinI | GGWCC | 3 cut(s) | 4, 307, 438 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 299 |
| SmlI | CTYRAG | 1 cut(s) | 374 |
| SmoI | CTYRAG | 1 cut(s) | 374 |
| Sse9I | AATT | 3 cut(s) | 35, 138, 313 |
| SspI | AATATT | 1 cut(s) | 228 |
| SspMI | CTAG | 3 cut(s) | 206, 386, 480 |
| TaaI | ACNGT | 1 cut(s) | 92 |
| TasI | AATT | 3 cut(s) | 35, 138, 313 |
| Tru1I | TTAA | 4 cut(s) | 249, 312, 345, 486 |
| Tru9I | TTAA | 4 cut(s) | 249, 312, 345, 486 |
| TscAI | CASTG | 1 cut(s) | 387 |
| TseFI | GTSAC | 1 cut(s) | 378 |
| Tsp45I | GTSAC | 1 cut(s) | 378 |
| TspDTI | ATGAA | 1 cut(s) | 366 |
| TspRI | CASTG | 1 cut(s) | 387 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 307, 438 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 115 |
| XbaI | TCTAGA | 1 cut(s) | 205 |
| XspI | CTAG | 3 cut(s) | 206, 386, 480 |