gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 2 - 133 | 2.2e-12 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 247, 412 |
| AclWI | GGATC | 1 cut(s) | 392 |
| AcoI | YGGCCR | 1 cut(s) | 504 |
| AfaI | GTAC | 2 cut(s) | 22, 164 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 606 |
| AgsI | TTSAA | 3 cut(s) | 160, 492, 532 |
| AluBI | AGCT | 6 cut(s) | 67, 131, 232, 380, 460, 497 |
| AluI | AGCT | 6 cut(s) | 67, 131, 232, 380, 460, 497 |
| Alw21I | GWGCWC | 1 cut(s) | 234 |
| AlwI | GGATC | 1 cut(s) | 392 |
| AoxI | GGCC | 2 cut(s) | 504, 518 |
| ApeKI | GCWGC | 2 cut(s) | 128, 497 |
| AspS9I | GGNCC | 1 cut(s) | 309 |
| AsuNHI | GCTAGC | 1 cut(s) | 67 |
| AvaII | GGWCC | 1 cut(s) | 309 |
| BalI | TGGCCA | 1 cut(s) | 506 |
| BanII | GRGCYC | 1 cut(s) | 234 |
| Bbv12I | GWGCWC | 1 cut(s) | 234 |
| BbvI | GCAGC | 2 cut(s) | 140, 484 |
| BccI | CCATC | 2 cut(s) | 232, 368 |
| BclI | TGATCA | 1 cut(s) | 204 |
| BfaI | CTAG | 3 cut(s) | 68, 132, 381 |
| BfmI | CTRYAG | 2 cut(s) | 408, 498 |
| BfuAI | ACCTGC | 2 cut(s) | 247, 412 |
| BisI | GCNGC | 2 cut(s) | 129, 498 |
| BlsI | GCNGC | 2 cut(s) | 130, 499 |
| Bme18I | GGWCC | 1 cut(s) | 309 |
| BmgT120I | GGNCC | 1 cut(s) | 309 |
| BmsI | GCATC | 1 cut(s) | 80 |
| BmtI | GCTAGC | 1 cut(s) | 71 |
| Bpu10I | CCTNAGC | 1 cut(s) | 63 |
| BpuEI | CTTGAG | 1 cut(s) | 446 |
| BsaJI | CCNNGG | 2 cut(s) | 141, 507 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 606 |
| Bse1I | ACTGG | 3 cut(s) | 312, 341, 583 |
| BseDI | CCNNGG | 2 cut(s) | 141, 507 |
| BseGI | GGATG | 1 cut(s) | 256 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 606 |
| BseMII | CTCAG | 2 cut(s) | 54, 238 |
| BseNI | ACTGG | 3 cut(s) | 312, 341, 583 |
| BseXI | GCAGC | 2 cut(s) | 140, 484 |
| BsgI | GTGCAG | 1 cut(s) | 559 |
| BshFI | GGCC | 2 cut(s) | 506, 520 |
| BsiHKAI | GWGCWC | 1 cut(s) | 234 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 606 |
| BsnI | GGCC | 2 cut(s) | 506, 520 |
| Bsp1286I | GDGCHC | 1 cut(s) | 234 |
| Bsp143I | GATC | 2 cut(s) | 204, 384 |
| BspANI | GGCC | 2 cut(s) | 506, 520 |
| BspCNI | CTCAG | 2 cut(s) | 55, 237 |
| BspHI | TCATGA | 1 cut(s) | 151 |
| BspMAI | CTGCAG | 1 cut(s) | 502 |
| BspMI | ACCTGC | 2 cut(s) | 247, 412 |
| BspOI | GCTAGC | 1 cut(s) | 71 |
| BspPI | GGATC | 1 cut(s) | 392 |
| BspQI | GCTCTTC | 1 cut(s) | 51 |
| BsrI | ACTGG | 3 cut(s) | 312, 341, 583 |
| BssECI | CCNNGG | 2 cut(s) | 141, 507 |
| BssMI | GATC | 2 cut(s) | 204, 384 |
| BssT1I | CCWWGG | 2 cut(s) | 141, 507 |
| Bst4CI | ACNGT | 2 cut(s) | 40, 293 |
| Bst6I | CTCTTC | 1 cut(s) | 51 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 262 |
| BstC8I | GCNNGC | 1 cut(s) | 69 |
| BstDEI | CTNAG | 7 cut(s) | 6, 63, 99, 224, 305, 435, 483 |
| BstF5I | GGATG | 1 cut(s) | 256 |
| BstKTI | GATC | 2 cut(s) | 207, 387 |
| BstMBI | GATC | 2 cut(s) | 204, 384 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 128, 262, 503, 543 |
| BstSFI | CTRYAG | 2 cut(s) | 408, 498 |
| BstV1I | GCAGC | 2 cut(s) | 140, 484 |
| BsuRI | GGCC | 2 cut(s) | 506, 520 |
| BtsCI | GGATG | 1 cut(s) | 256 |
| BtsI | GCAGTG | 1 cut(s) | 507 |
| BtsIMutI | CAGTG | 2 cut(s) | 507, 576 |
| BveI | ACCTGC | 2 cut(s) | 247, 412 |
| Cac8I | GCNNGC | 1 cut(s) | 69 |
| CciI | TCATGA | 1 cut(s) | 151 |
| Cfr13I | GGNCC | 1 cut(s) | 309 |
| Csp6I | GTAC | 2 cut(s) | 21, 163 |
| CviAII | CATG | 3 cut(s) | 152, 166, 562 |
| CviQI | GTAC | 2 cut(s) | 21, 163 |
| DdeI | CTNAG | 7 cut(s) | 6, 63, 99, 224, 305, 435, 483 |
| DpnI | GATC | 2 cut(s) | 206, 386 |
| DpnII | GATC | 2 cut(s) | 204, 384 |
| DraI | TTTAAA | 1 cut(s) | 106 |
| EaeI | YGGCCR | 1 cut(s) | 504 |
| Eam1104I | CTCTTC | 1 cut(s) | 51 |
| EarI | CTCTTC | 1 cut(s) | 51 |
| Ecl136II | GAGCTC | 1 cut(s) | 232 |
| Eco130I | CCWWGG | 2 cut(s) | 141, 507 |
| Eco24I | GRGCYC | 1 cut(s) | 234 |
| Eco47I | GGWCC | 1 cut(s) | 309 |
| Eco53kI | GAGCTC | 1 cut(s) | 232 |
| EcoICRI | GAGCTC | 1 cut(s) | 232 |
| EcoT14I | CCWWGG | 2 cut(s) | 141, 507 |
| EcoT38I | GRGCYC | 1 cut(s) | 234 |
| ErhI | CCWWGG | 2 cut(s) | 141, 507 |
| FaeI | CATG | 3 cut(s) | 155, 169, 565 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 524, 556 |
| FatI | CATG | 3 cut(s) | 151, 165, 561 |
| FbaI | TGATCA | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 2 cut(s) | 129, 498 |
| FokI | GGATG | 1 cut(s) | 263 |
| FriOI | GRGCYC | 1 cut(s) | 234 |
| Fsp4HI | GCNGC | 2 cut(s) | 129, 498 |
| FspBI | CTAG | 3 cut(s) | 68, 132, 381 |
| GluI | GCNGC | 2 cut(s) | 129, 498 |
| HaeIII | GGCC | 2 cut(s) | 506, 520 |
| Hin1II | CATG | 3 cut(s) | 155, 169, 565 |
| HinfI | GANTC | 4 cut(s) | 10, 222, 610, 625 |
| Hpy188I | TCNGA | 1 cut(s) | 76 |
| Hpy188III | TCNNGA | 3 cut(s) | 83, 152, 235 |
| HpyCH4III | ACNGT | 2 cut(s) | 40, 293 |
| HpyCH4V | TGCA | 5 cut(s) | 265, 272, 500, 546, 576 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 128, 262, 503, 543 |
| HpyF3I | CTNAG | 7 cut(s) | 6, 63, 99, 224, 305, 435, 483 |
| Hsp92II | CATG | 3 cut(s) | 155, 169, 565 |
| Ksp22I | TGATCA | 1 cut(s) | 204 |
| Kzo9I | GATC | 2 cut(s) | 204, 384 |
| LguI | GCTCTTC | 1 cut(s) | 51 |
| LmnI | GCTCC | 2 cut(s) | 229, 619 |
| Lsp1109I | GCAGC | 2 cut(s) | 140, 484 |
| LweI | GCATC | 1 cut(s) | 80 |
| MaeI | CTAG | 3 cut(s) | 68, 132, 381 |
| MaeIII | GTNAC | 1 cut(s) | 314 |
| MalI | GATC | 2 cut(s) | 206, 386 |
| MboI | GATC | 2 cut(s) | 204, 384 |
| MboII | GAAGA | 4 cut(s) | 68, 211, 404, 451 |
| MhlI | GDGCHC | 1 cut(s) | 234 |
| MlsI | TGGCCA | 1 cut(s) | 506 |
| MluCI | AATT | 1 cut(s) | 589 |
| MluNI | TGGCCA | 1 cut(s) | 506 |
| MlyI | GAGTC | 1 cut(s) | 216 |
| MnlI | CCTC | 2 cut(s) | 34, 367 |
| Mox20I | TGGCCA | 1 cut(s) | 506 |
| MscI | TGGCCA | 1 cut(s) | 506 |
| MseI | TTAA | 1 cut(s) | 105 |
| Msp20I | TGGCCA | 1 cut(s) | 506 |
| MspA1I | CMGCKG | 1 cut(s) | 497 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 128, 262, 503, 543 |
| NdeII | GATC | 2 cut(s) | 204, 384 |
| NheI | GCTAGC | 1 cut(s) | 67 |
| NlaIII | CATG | 3 cut(s) | 155, 169, 565 |
| PagI | TCATGA | 1 cut(s) | 151 |
| PciSI | GCTCTTC | 1 cut(s) | 51 |
| PfeI | GAWTC | 3 cut(s) | 10, 610, 625 |
| PkrI | GCNGC | 2 cut(s) | 130, 499 |
| PleI | GAGTC | 1 cut(s) | 216 |
| PpsI | GAGTC | 1 cut(s) | 216 |
| Psp124BI | GAGCTC | 1 cut(s) | 234 |
| PspPI | GGNCC | 1 cut(s) | 309 |
| PstI | CTGCAG | 1 cut(s) | 502 |
| PvuII | CAGCTG | 1 cut(s) | 497 |
| RsaI | GTAC | 2 cut(s) | 22, 164 |
| RsaNI | GTAC | 2 cut(s) | 21, 163 |
| SacI | GAGCTC | 1 cut(s) | 234 |
| SapI | GCTCTTC | 1 cut(s) | 51 |
| SaqAI | TTAA | 1 cut(s) | 105 |
| SatI | GCNGC | 2 cut(s) | 129, 498 |
| Sau3AI | GATC | 2 cut(s) | 204, 384 |
| Sau96I | GGNCC | 1 cut(s) | 309 |
| SchI | GAGTC | 1 cut(s) | 216 |
| SduI | GDGCHC | 1 cut(s) | 234 |
| SfaNI | GCATC | 1 cut(s) | 80 |
| SfcI | CTRYAG | 2 cut(s) | 408, 498 |
| SinI | GGWCC | 1 cut(s) | 309 |
| SmlI | CTYRAG | 1 cut(s) | 461 |
| SmoI | CTYRAG | 1 cut(s) | 461 |
| Sse9I | AATT | 1 cut(s) | 589 |
| SspMI | CTAG | 3 cut(s) | 68, 132, 381 |
| SstI | GAGCTC | 1 cut(s) | 234 |
| StyI | CCWWGG | 2 cut(s) | 141, 507 |
| TaaI | ACNGT | 2 cut(s) | 40, 293 |
| TasI | AATT | 1 cut(s) | 589 |
| TatI | WGTACW | 1 cut(s) | 162 |
| TfiI | GAWTC | 3 cut(s) | 10, 610, 625 |
| Tru1I | TTAA | 1 cut(s) | 105 |
| Tru9I | TTAA | 1 cut(s) | 105 |
| TscAI | CASTG | 2 cut(s) | 507, 583 |
| TseI | GCWGC | 2 cut(s) | 128, 497 |
| TspDTI | ATGAA | 6 cut(s) | 140, 212, 266, 363, 578, 602 |
| TspRI | CASTG | 2 cut(s) | 507, 583 |
| VpaK11BI | GGWCC | 1 cut(s) | 309 |
| XspI | CTAG | 3 cut(s) | 68, 132, 381 |