gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 124 |
| Acc36I | ACCTGC | 2 cut(s) | 124, 136 |
| AclWI | GGATC | 3 cut(s) | 104, 362, 479 |
| AcsI | RAATTY | 1 cut(s) | 37 |
| AcuI | CTGAAG | 1 cut(s) | 362 |
| AfaI | GTAC | 2 cut(s) | 221, 308 |
| AflII | CTTAAG | 1 cut(s) | 101 |
| AgsI | TTSAA | 5 cut(s) | 20, 43, 202, 589, 603 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 182, 214 |
| AluBI | AGCT | 5 cut(s) | 67, 212, 340, 453, 570 |
| AluI | AGCT | 5 cut(s) | 67, 212, 340, 453, 570 |
| Alw21I | GWGCWC | 1 cut(s) | 69 |
| AlwI | GGATC | 3 cut(s) | 104, 362, 479 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 179 |
| AoxI | GGCC | 2 cut(s) | 346, 463 |
| ApeKI | GCWGC | 2 cut(s) | 131, 134 |
| ApoI | RAATTY | 1 cut(s) | 37 |
| AspA2I | CCTAGG | 1 cut(s) | 73 |
| AspS9I | GGNCC | 2 cut(s) | 346, 463 |
| AvrII | CCTAGG | 1 cut(s) | 73 |
| BanII | GRGCYC | 1 cut(s) | 69 |
| Bbv12I | GWGCWC | 1 cut(s) | 69 |
| BbvI | GCAGC | 2 cut(s) | 143, 146 |
| BclI | TGATCA | 2 cut(s) | 393, 510 |
| BfaI | CTAG | 2 cut(s) | 74, 594 |
| BfmI | CTRYAG | 1 cut(s) | 129 |
| BfrI | CTTAAG | 1 cut(s) | 101 |
| BfuAI | ACCTGC | 2 cut(s) | 124, 136 |
| BisI | GCNGC | 2 cut(s) | 132, 135 |
| BlnI | CCTAGG | 1 cut(s) | 73 |
| BlpI | GCTNAGC | 2 cut(s) | 432, 549 |
| BlsI | GCNGC | 2 cut(s) | 133, 136 |
| BmgT120I | GGNCC | 2 cut(s) | 346, 463 |
| BmrI | ACTGGG | 1 cut(s) | 279 |
| BmsI | GCATC | 4 cut(s) | 15, 146, 426, 543 |
| BmuI | ACTGGG | 1 cut(s) | 279 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 432, 549 |
| BsaJI | CCNNGG | 2 cut(s) | 73, 150 |
| Bse1I | ACTGG | 1 cut(s) | 274 |
| Bse3DI | GCAATG | 1 cut(s) | 327 |
| BseDI | CCNNGG | 2 cut(s) | 73, 150 |
| BseGI | GGATG | 2 cut(s) | 137, 279 |
| BseMI | GCAATG | 1 cut(s) | 327 |
| BseMII | CTCAG | 4 cut(s) | 111, 171, 204, 231 |
| BseNI | ACTGG | 1 cut(s) | 274 |
| BseXI | GCAGC | 2 cut(s) | 143, 146 |
| BshFI | GGCC | 2 cut(s) | 348, 465 |
| BsiHKAI | GWGCWC | 1 cut(s) | 69 |
| BsmI | GAATGC | 2 cut(s) | 78, 265 |
| BsnI | GGCC | 2 cut(s) | 348, 465 |
| Bsp1286I | GDGCHC | 1 cut(s) | 69 |
| Bsp143I | GATC | 5 cut(s) | 109, 367, 393, 484, 510 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 432, 549 |
| BspANI | GGCC | 2 cut(s) | 348, 465 |
| BspCNI | CTCAG | 4 cut(s) | 112, 172, 205, 232 |
| BspMAI | CTGCAG | 1 cut(s) | 133 |
| BspMI | ACCTGC | 2 cut(s) | 124, 136 |
| BspPI | GGATC | 3 cut(s) | 104, 362, 479 |
| BspTI | CTTAAG | 1 cut(s) | 101 |
| BsrDI | GCAATG | 1 cut(s) | 327 |
| BsrI | ACTGG | 1 cut(s) | 274 |
| BssECI | CCNNGG | 2 cut(s) | 73, 150 |
| BssMI | GATC | 5 cut(s) | 109, 367, 393, 484, 510 |
| BssT1I | CCWWGG | 2 cut(s) | 73, 150 |
| BstAFI | CTTAAG | 1 cut(s) | 101 |
| BstDEI | CTNAG | 6 cut(s) | 120, 180, 213, 240, 432, 549 |
| BstF5I | GGATG | 2 cut(s) | 137, 279 |
| BstKTI | GATC | 5 cut(s) | 112, 370, 396, 487, 513 |
| BstMBI | GATC | 5 cut(s) | 109, 367, 393, 484, 510 |
| BstSFI | CTRYAG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 2 cut(s) | 143, 146 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| BsuRI | GGCC | 2 cut(s) | 348, 465 |
| BtsCI | GGATG | 2 cut(s) | 137, 279 |
| BtsI | GCAGTG | 2 cut(s) | 417, 534 |
| BtsIMutI | CAGTG | 4 cut(s) | 251, 267, 417, 534 |
| BveI | ACCTGC | 2 cut(s) | 124, 136 |
| CaiI | CAGNNNCTG | 1 cut(s) | 179 |
| Cfr13I | GGNCC | 2 cut(s) | 346, 463 |
| Csp6I | GTAC | 2 cut(s) | 220, 307 |
| CviAII | CATG | 1 cut(s) | 290 |
| CviQI | GTAC | 2 cut(s) | 220, 307 |
| DdeI | CTNAG | 6 cut(s) | 120, 180, 213, 240, 432, 549 |
| DpnI | GATC | 5 cut(s) | 111, 369, 395, 486, 512 |
| DpnII | GATC | 5 cut(s) | 109, 367, 393, 484, 510 |
| Ecl136II | GAGCTC | 1 cut(s) | 67 |
| Eco130I | CCWWGG | 2 cut(s) | 73, 150 |
| Eco24I | GRGCYC | 1 cut(s) | 69 |
| Eco53kI | GAGCTC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 1 cut(s) | 362 |
| EcoICRI | GAGCTC | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 2 cut(s) | 346, 463 |
| EcoT14I | CCWWGG | 2 cut(s) | 73, 150 |
| EcoT38I | GRGCYC | 1 cut(s) | 69 |
| ErhI | CCWWGG | 2 cut(s) | 73, 150 |
| FaeI | CATG | 1 cut(s) | 293 |
| FaiI | YATR | 9 cut(s) | 96, 280, 291, 299, 314, 356, 426, 473, 543 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 437, 469, 554, 586 |
| FatI | CATG | 1 cut(s) | 289 |
| FbaI | TGATCA | 2 cut(s) | 393, 510 |
| Fnu4HI | GCNGC | 2 cut(s) | 132, 135 |
| FokI | GGATG | 2 cut(s) | 124, 286 |
| FriOI | GRGCYC | 1 cut(s) | 69 |
| Fsp4HI | GCNGC | 2 cut(s) | 132, 135 |
| FspBI | CTAG | 2 cut(s) | 74, 594 |
| GluI | GCNGC | 2 cut(s) | 132, 135 |
| HaeIII | GGCC | 2 cut(s) | 348, 465 |
| Hin1II | CATG | 1 cut(s) | 293 |
| HindIII | AAGCTT | 2 cut(s) | 451, 568 |
| HinfI | GANTC | 1 cut(s) | 176 |
| Hpy166II | GTNNAC | 1 cut(s) | 196 |
| Hpy188I | TCNGA | 2 cut(s) | 181, 232 |
| Hpy188III | TCNNGA | 4 cut(s) | 43, 83, 377, 494 |
| Hpy8I | GTNNAC | 1 cut(s) | 196 |
| HpyAV | CCTTC | 1 cut(s) | 337 |
| HpyCH4V | TGCA | 3 cut(s) | 131, 263, 332 |
| HpyF3I | CTNAG | 6 cut(s) | 120, 180, 213, 240, 432, 549 |
| Hsp92II | CATG | 1 cut(s) | 293 |
| Ksp22I | TGATCA | 2 cut(s) | 393, 510 |
| Kzo9I | GATC | 5 cut(s) | 109, 367, 393, 484, 510 |
| Lsp1109I | GCAGC | 2 cut(s) | 143, 146 |
| LweI | GCATC | 4 cut(s) | 15, 146, 426, 543 |
| MaeI | CTAG | 2 cut(s) | 74, 594 |
| MaeIII | GTNAC | 1 cut(s) | 123 |
| MalI | GATC | 5 cut(s) | 111, 369, 395, 486, 512 |
| MboI | GATC | 5 cut(s) | 109, 367, 393, 484, 510 |
| MboII | GAAGA | 4 cut(s) | 119, 392, 509, 591 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MhlI | GDGCHC | 1 cut(s) | 69 |
| MluCI | AATT | 3 cut(s) | 15, 20, 37 |
| MnlI | CCTC | 1 cut(s) | 158 |
| MseI | TTAA | 1 cut(s) | 102 |
| MslI | CAYNNNNRTG | 2 cut(s) | 254, 272 |
| MspCI | CTTAAG | 1 cut(s) | 101 |
| Mva1269I | GAATGC | 2 cut(s) | 78, 265 |
| NdeII | GATC | 5 cut(s) | 109, 367, 393, 484, 510 |
| NlaIII | CATG | 1 cut(s) | 293 |
| PaqCI | CACCTGC | 1 cut(s) | 124 |
| PctI | GAATGC | 2 cut(s) | 78, 265 |
| PfeI | GAWTC | 1 cut(s) | 176 |
| PkrI | GCNGC | 2 cut(s) | 133, 136 |
| Psp124BI | GAGCTC | 1 cut(s) | 69 |
| PspPI | GGNCC | 2 cut(s) | 346, 463 |
| PstI | CTGCAG | 1 cut(s) | 133 |
| PstNI | CAGNNNCTG | 1 cut(s) | 179 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| RsaI | GTAC | 2 cut(s) | 221, 308 |
| RsaNI | GTAC | 2 cut(s) | 220, 307 |
| RseI | CAYNNNNRTG | 2 cut(s) | 254, 272 |
| SacI | GAGCTC | 1 cut(s) | 69 |
| SaqAI | TTAA | 1 cut(s) | 102 |
| SatI | GCNGC | 2 cut(s) | 132, 135 |
| Sau3AI | GATC | 5 cut(s) | 109, 367, 393, 484, 510 |
| Sau96I | GGNCC | 2 cut(s) | 346, 463 |
| SduI | GDGCHC | 1 cut(s) | 69 |
| SetI | ASST | 9 cut(s) | 69, 75, 118, 130, 214, 228, 342, 455, 572 |
| SfaNI | GCATC | 4 cut(s) | 15, 146, 426, 543 |
| SfcI | CTRYAG | 1 cut(s) | 129 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 254, 272 |
| SmlI | CTYRAG | 1 cut(s) | 101 |
| SmoI | CTYRAG | 1 cut(s) | 101 |
| Sse9I | AATT | 3 cut(s) | 15, 20, 37 |
| SspI | AATATT | 2 cut(s) | 361, 478 |
| SspMI | CTAG | 2 cut(s) | 74, 594 |
| SstI | GAGCTC | 1 cut(s) | 69 |
| StyI | CCWWGG | 2 cut(s) | 73, 150 |
| TasI | AATT | 3 cut(s) | 15, 20, 37 |
| TatI | WGTACW | 2 cut(s) | 219, 306 |
| TfiI | GAWTC | 1 cut(s) | 176 |
| Tru1I | TTAA | 1 cut(s) | 102 |
| Tru9I | TTAA | 1 cut(s) | 102 |
| TscAI | CASTG | 4 cut(s) | 258, 274, 417, 534 |
| TseI | GCWGC | 2 cut(s) | 131, 134 |
| TspDTI | ATGAA | 6 cut(s) | 272, 329, 371, 402, 488, 519 |
| TspRI | CASTG | 4 cut(s) | 258, 274, 417, 534 |
| Vha464I | CTTAAG | 1 cut(s) | 101 |
| XapI | RAATTY | 1 cut(s) | 37 |
| XmaJI | CCTAGG | 1 cut(s) | 73 |
| XspI | CTAG | 2 cut(s) | 74, 594 |