Long chain base biosynthesis protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 63 - 215 | 2.4e-18 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 327 - 409 | 4e-19 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 454 - 511 | 2.3e-11 | GAG-pre-integrase domain |
| rve | PF00665 | 527 - 633 | 9e-09 | Integrase core domain |
| SH3_retrovirus | PF25597 | 714 - 764 | 3.1e-14 | Retroviral polymerase SH3-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1797 |
| AccI | GTMKAC | 1 cut(s) | 1880 |
| AccII | CGCG | 1 cut(s) | 2305 |
| AciI | CCGC | 1 cut(s) | 2305 |
| AclWI | GGATC | 7 cut(s) | 76, 441, 1962, 2242, 2255, 2289, 2340 |
| AcuI | CTGAAG | 1 cut(s) | 702 |
| AdeI | CACNNNGTG | 1 cut(s) | 611 |
| AfaI | GTAC | 6 cut(s) | 675, 933, 966, 1811, 2034, 2368 |
| AflII | CTTAAG | 1 cut(s) | 842 |
| AjnI | CCWGG | 3 cut(s) | 679, 724, 1978 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 474, 506 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 987, 1019 |
| Alw21I | GWGCWC | 1 cut(s) | 1167 |
| Alw26I | GTCTC | 3 cut(s) | 562, 1315, 1918 |
| AlwI | GGATC | 7 cut(s) | 76, 441, 1962, 2242, 2255, 2289, 2340 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 458, 725 |
| ApeKI | GCWGC | 5 cut(s) | 332, 458, 502, 711, 773 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1446, 1473, 2100 |
| AspS9I | GGNCC | 3 cut(s) | 722, 1604, 1835 |
| AsuC2I | CCSGG | 1 cut(s) | 1890 |
| AsuHPI | GGTGA | 1 cut(s) | 1960 |
| AsuII | TTCGAA | 1 cut(s) | 11 |
| AvaII | GGWCC | 3 cut(s) | 722, 1604, 1835 |
| BaeGI | GKGCMC | 1 cut(s) | 1431 |
| BamHI | GGATCC | 1 cut(s) | 2247 |
| BbsI | GAAGAC | 2 cut(s) | 62, 2012 |
| Bbv12I | GWGCWC | 1 cut(s) | 1167 |
| BbvI | GCAGC | 5 cut(s) | 319, 445, 514, 723, 760 |
| BccI | CCATC | 2 cut(s) | 266, 1214 |
| BceAI | ACGGC | 1 cut(s) | 1879 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 637, 671 |
| BciT130I | CCWGG | 3 cut(s) | 681, 726, 1980 |
| BciVI | GTATCC | 1 cut(s) | 2205 |
| BclI | TGATCA | 2 cut(s) | 190, 1348 |
| BcnI | CCSGG | 1 cut(s) | 1890 |
| BcoDI | GTCTC | 3 cut(s) | 562, 1315, 1918 |
| BfaI | CTAG | 6 cut(s) | 795, 1325, 1484, 1550, 1668, 2354 |
| BfmI | CTRYAG | 1 cut(s) | 2215 |
| BfrI | CTTAAG | 1 cut(s) | 842 |
| BfuAI | ACCTGC | 1 cut(s) | 1797 |
| BfuI | GTATCC | 1 cut(s) | 2205 |
| BglII | AGATCT | 1 cut(s) | 2296 |
| BisI | GCNGC | 5 cut(s) | 333, 459, 503, 712, 774 |
| BlsI | GCNGC | 5 cut(s) | 334, 460, 504, 713, 775 |
| BmcAI | AGTACT | 1 cut(s) | 933 |
| Bme1390I | CCNGG | 4 cut(s) | 681, 726, 1890, 1980 |
| Bme18I | GGWCC | 3 cut(s) | 722, 1604, 1835 |
| BmgT120I | GGNCC | 3 cut(s) | 722, 1604, 1835 |
| BmiI | GGNNCC | 2 cut(s) | 1836, 2249 |
| BmrFI | CCNGG | 4 cut(s) | 681, 726, 1890, 1980 |
| BmrI | ACTGGG | 2 cut(s) | 592, 1682 |
| BmsI | GCATC | 4 cut(s) | 445, 986, 1543, 1696 |
| BmuI | ACTGGG | 2 cut(s) | 592, 1682 |
| BpiI | GAAGAC | 2 cut(s) | 62, 2012 |
| BpmI | CTGGAG | 1 cut(s) | 1339 |
| Bpu14I | TTCGAA | 1 cut(s) | 11 |
| BpuMI | CCSGG | 1 cut(s) | 1890 |
| Bsa29I | ATCGAT | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 2 cut(s) | 477, 1889 |
| Bse1I | ACTGG | 7 cut(s) | 94, 379, 424, 587, 997, 1613, 1677 |
| Bse3DI | GCAATG | 1 cut(s) | 1293 |
| BseBI | CCWGG | 3 cut(s) | 681, 726, 1980 |
| BseCI | ATCGAT | 1 cut(s) | 35 |
| BseDI | CCNNGG | 2 cut(s) | 477, 1889 |
| BseGI | GGATG | 2 cut(s) | 1001, 2346 |
| BseMI | GCAATG | 1 cut(s) | 1293 |
| BseMII | CTCAG | 4 cut(s) | 198, 584, 1728, 1889 |
| BseNI | ACTGG | 7 cut(s) | 94, 379, 424, 587, 997, 1613, 1677 |
| BseRI | GAGGAG | 2 cut(s) | 130, 1806 |
| BseSI | GKGCMC | 1 cut(s) | 1431 |
| BseXI | GCAGC | 5 cut(s) | 319, 445, 514, 723, 760 |
| Bsh1236I | CGCG | 1 cut(s) | 2305 |
| BshVI | ATCGAT | 1 cut(s) | 35 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1167 |
| BsiSI | CCGG | 1 cut(s) | 1889 |
| BslFI | GGGAC | 3 cut(s) | 1099, 1848, 1906 |
| BsmAI | GTCTC | 3 cut(s) | 562, 1315, 1918 |
| BsmFI | GGGAC | 3 cut(s) | 1099, 1848, 1906 |
| BsmI | GAATGC | 3 cut(s) | 698, 1102, 1229 |
| Bsp119I | TTCGAA | 1 cut(s) | 11 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1167, 1431 |
| Bsp1407I | TGTACA | 1 cut(s) | 673 |
| Bsp19I | CCATGG | 1 cut(s) | 477 |
| BspACI | CCGC | 1 cut(s) | 2305 |
| BspCNI | CTCAG | 4 cut(s) | 199, 583, 1729, 1888 |
| BspDI | ATCGAT | 1 cut(s) | 35 |
| BspFNI | CGCG | 1 cut(s) | 2305 |
| BspHI | TCATGA | 1 cut(s) | 513 |
| BspLI | GGNNCC | 2 cut(s) | 1836, 2249 |
| BspMI | ACCTGC | 1 cut(s) | 1797 |
| BspPI | GGATC | 7 cut(s) | 76, 441, 1962, 2242, 2255, 2289, 2340 |
| BspQI | GCTCTTC | 2 cut(s) | 721, 905 |
| BspT104I | TTCGAA | 1 cut(s) | 11 |
| BspTI | CTTAAG | 1 cut(s) | 842 |
| BsrDI | GCAATG | 1 cut(s) | 1293 |
| BsrGI | TGTACA | 1 cut(s) | 673 |
| BsrI | ACTGG | 7 cut(s) | 94, 379, 424, 587, 997, 1613, 1677 |
| BssECI | CCNNGG | 2 cut(s) | 477, 1889 |
| BssNAI | GTATAC | 1 cut(s) | 1881 |
| BssT1I | CCWWGG | 1 cut(s) | 477 |
| Bst1107I | GTATAC | 1 cut(s) | 1881 |
| Bst2UI | CCWGG | 3 cut(s) | 681, 726, 1980 |
| Bst4CI | ACNGT | 3 cut(s) | 1274, 1498, 1752 |
| Bst6I | CTCTTC | 3 cut(s) | 686, 721, 905 |
| BstAFI | CTTAAG | 1 cut(s) | 842 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1235 |
| BstAUI | TGTACA | 1 cut(s) | 673 |
| BstBI | TTCGAA | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 1 cut(s) | 315 |
| BstDEI | CTNAG | 7 cut(s) | 207, 570, 747, 1089, 1737, 1875, 2275 |
| BstDSI | CCRYGG | 1 cut(s) | 477 |
| BstF5I | GGATG | 2 cut(s) | 1001, 2346 |
| BstFNI | CGCG | 1 cut(s) | 2305 |
| BstMAI | GTCTC | 3 cut(s) | 562, 1315, 1918 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1171, 1235 |
| BstNI | CCWGG | 3 cut(s) | 681, 726, 1980 |
| BstSCI | CCNGG | 4 cut(s) | 679, 724, 1888, 1978 |
| BstSFI | CTRYAG | 1 cut(s) | 2215 |
| BstSLI | GKGCMC | 1 cut(s) | 1431 |
| BstUI | CGCG | 1 cut(s) | 2305 |
| BstV1I | GCAGC | 5 cut(s) | 319, 445, 514, 723, 760 |
| BstV2I | GAAGAC | 2 cut(s) | 62, 2012 |
| BstX2I | RGATCY | 3 cut(s) | 1967, 2247, 2296 |
| BstYI | RGATCY | 3 cut(s) | 1967, 2247, 2296 |
| BstZ17I | GTATAC | 1 cut(s) | 1881 |
| Bsu15I | ATCGAT | 1 cut(s) | 35 |
| BsuI | GTATCC | 1 cut(s) | 2205 |
| BsuTUI | ATCGAT | 1 cut(s) | 35 |
| BtgI | CCRYGG | 1 cut(s) | 477 |
| BtsCI | GGATG | 2 cut(s) | 1001, 2346 |
| BtsI | GCAGTG | 1 cut(s) | 1104 |
| BtsIMutI | CAGTG | 5 cut(s) | 990, 1104, 1494, 1590, 1812 |
| BveI | ACCTGC | 1 cut(s) | 1797 |
| Cac8I | GCNNGC | 1 cut(s) | 315 |
| CaiI | CAGNNNCTG | 2 cut(s) | 458, 725 |
| CciI | TCATGA | 1 cut(s) | 513 |
| Cfr13I | GGNCC | 3 cut(s) | 722, 1604, 1835 |
| ClaI | ATCGAT | 1 cut(s) | 35 |
| Csp6I | GTAC | 6 cut(s) | 674, 932, 965, 1810, 2033, 2367 |
| CviAII | CATG | 6 cut(s) | 478, 514, 1067, 1391, 2075, 2342 |
| CviQI | GTAC | 6 cut(s) | 674, 932, 965, 1810, 2033, 2367 |
| DdeI | CTNAG | 7 cut(s) | 207, 570, 747, 1089, 1737, 1875, 2275 |
| DraI | TTTAAA | 3 cut(s) | 814, 876, 898 |
| DraIII | CACNNNGTG | 1 cut(s) | 611 |
| Eam1104I | CTCTTC | 3 cut(s) | 686, 721, 905 |
| EarI | CTCTTC | 3 cut(s) | 686, 721, 905 |
| Eco130I | CCWWGG | 1 cut(s) | 477 |
| Eco32I | GATATC | 1 cut(s) | 124 |
| Eco47I | GGWCC | 3 cut(s) | 722, 1604, 1835 |
| Eco57I | CTGAAG | 1 cut(s) | 702 |
| EcoO109I | RGGNCCY | 1 cut(s) | 722 |
| EcoRI | GAATTC | 2 cut(s) | 733, 751 |
| EcoRII | CCWGG | 3 cut(s) | 679, 724, 1978 |
| EcoRV | GATATC | 1 cut(s) | 124 |
| EcoT14I | CCWWGG | 1 cut(s) | 477 |
| EcoT22I | ATGCAT | 1 cut(s) | 1231 |
| ErhI | CCWWGG | 1 cut(s) | 477 |
| FaeI | CATG | 6 cut(s) | 481, 517, 1070, 1394, 2078, 2345 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1560, 1592 |
| FaqI | GGGAC | 3 cut(s) | 1099, 1848, 1906 |
| FatI | CATG | 6 cut(s) | 477, 513, 1066, 1390, 2074, 2341 |
| FauI | CCCGC | 1 cut(s) | 2298 |
| FbaI | TGATCA | 2 cut(s) | 190, 1348 |
| FblI | GTMKAC | 1 cut(s) | 1880 |
| Fnu4HI | GCNGC | 5 cut(s) | 333, 459, 503, 712, 774 |
| FokI | GGATG | 2 cut(s) | 1008, 2333 |
| Fsp4HI | GCNGC | 5 cut(s) | 333, 459, 503, 712, 774 |
| FspBI | CTAG | 6 cut(s) | 795, 1325, 1484, 1550, 1668, 2354 |
| GluI | GCNGC | 5 cut(s) | 333, 459, 503, 712, 774 |
| GsuI | CTGGAG | 1 cut(s) | 1339 |
| HapII | CCGG | 1 cut(s) | 1889 |
| Hin1II | CATG | 6 cut(s) | 481, 517, 1070, 1394, 2078, 2345 |
| HincII | GTYRAC | 2 cut(s) | 396, 1648 |
| HindII | GTYRAC | 2 cut(s) | 396, 1648 |
| HpaI | GTTAAC | 1 cut(s) | 1648 |
| HpaII | CCGG | 1 cut(s) | 1889 |
| HphI | GGTGA | 1 cut(s) | 1960 |
| Hpy166II | GTNNAC | 7 cut(s) | 396, 1006, 1120, 1648, 1729, 1812, 1881 |
| Hpy188III | TCNNGA | 9 cut(s) | 234, 514, 572, 1318, 1668, 1821, 1965, 2198, 2285 |
| Hpy8I | GTNNAC | 7 cut(s) | 396, 1006, 1120, 1648, 1729, 1812, 1881 |
| HpyAV | CCTTC | 3 cut(s) | 358, 1076, 1917 |
| HpyCH4III | ACNGT | 3 cut(s) | 1274, 1498, 1752 |
| HpyCH4IV | ACGT | 2 cut(s) | 2106, 2374 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1171, 1235 |
| HpyF3I | CTNAG | 7 cut(s) | 207, 570, 747, 1089, 1737, 1875, 2275 |
| HpySE526I | ACGT | 2 cut(s) | 2106, 2374 |
| Hsp92II | CATG | 6 cut(s) | 481, 517, 1070, 1394, 2078, 2345 |
| Ksp22I | TGATCA | 2 cut(s) | 190, 1348 |
| KspAI | GTTAAC | 1 cut(s) | 1648 |
| LguI | GCTCTTC | 2 cut(s) | 721, 905 |
| Lsp1109I | GCAGC | 5 cut(s) | 319, 445, 514, 723, 760 |
| LweI | GCATC | 4 cut(s) | 445, 986, 1543, 1696 |
| MaeI | CTAG | 6 cut(s) | 795, 1325, 1484, 1550, 1668, 2354 |
| MaeII | ACGT | 2 cut(s) | 2106, 2374 |
| MaeIII | GTNAC | 5 cut(s) | 1146, 1498, 1572, 2180, 2290 |
| MfeI | CAATTG | 1 cut(s) | 162 |
| MflI | RGATCY | 3 cut(s) | 1967, 2247, 2296 |
| MhlI | GDGCHC | 2 cut(s) | 1167, 1431 |
| MlyI | GAGTC | 7 cut(s) | 133, 365, 391, 782, 956, 1920, 2164 |
| Mph1103I | ATGCAT | 1 cut(s) | 1231 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1446, 1473, 2100 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1071 |
| MspCI | CTTAAG | 1 cut(s) | 842 |
| MspI | CCGG | 1 cut(s) | 1889 |
| MspR9I | CCNGG | 4 cut(s) | 681, 726, 1890, 1980 |
| MunI | CAATTG | 1 cut(s) | 162 |
| Mva1269I | GAATGC | 3 cut(s) | 698, 1102, 1229 |
| MvaI | CCWGG | 3 cut(s) | 681, 726, 1980 |
| MvnI | CGCG | 1 cut(s) | 2305 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1171, 1235 |
| NciI | CCSGG | 1 cut(s) | 1890 |
| NcoI | CCATGG | 1 cut(s) | 477 |
| NlaIII | CATG | 6 cut(s) | 481, 517, 1070, 1394, 2078, 2345 |
| NlaIV | GGNNCC | 2 cut(s) | 1836, 2249 |
| NmeAIII | GCCGAG | 2 cut(s) | 487, 607 |
| NmuCI | GTSAC | 1 cut(s) | 1498 |
| NsiI | ATGCAT | 1 cut(s) | 1231 |
| NspV | TTCGAA | 1 cut(s) | 11 |
| PagI | TCATGA | 1 cut(s) | 513 |
| PciSI | GCTCTTC | 2 cut(s) | 721, 905 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1927 |
| PctI | GAATGC | 3 cut(s) | 698, 1102, 1229 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1446, 1473, 2100 |
| PfeI | GAWTC | 8 cut(s) | 974, 1394, 1447, 1487, 1817, 1927, 2162, 2220 |
| PkrI | GCNGC | 5 cut(s) | 334, 460, 504, 713, 775 |
| PleI | GAGTC | 7 cut(s) | 133, 364, 391, 782, 955, 1919, 2164 |
| PpsI | GAGTC | 7 cut(s) | 133, 364, 391, 782, 955, 1919, 2164 |
| PpuMI | RGGWCCY | 1 cut(s) | 722 |
| Psp5II | RGGWCCY | 1 cut(s) | 722 |
| Psp6I | CCWGG | 3 cut(s) | 679, 724, 1978 |
| PspGI | CCWGG | 3 cut(s) | 679, 724, 1978 |
| PspN4I | GGNNCC | 2 cut(s) | 1836, 2249 |
| PspPI | GGNCC | 3 cut(s) | 722, 1604, 1835 |
| PspPPI | RGGWCCY | 1 cut(s) | 722 |
| PstNI | CAGNNNCTG | 2 cut(s) | 458, 725 |
| PsuI | RGATCY | 3 cut(s) | 1967, 2247, 2296 |
| RsaI | GTAC | 6 cut(s) | 675, 933, 966, 1811, 2034, 2368 |
| RsaNI | GTAC | 6 cut(s) | 674, 932, 965, 1810, 2033, 2367 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1071 |
| SapI | GCTCTTC | 2 cut(s) | 721, 905 |
| SatI | GCNGC | 5 cut(s) | 333, 459, 503, 712, 774 |
| Sau96I | GGNCC | 3 cut(s) | 722, 1604, 1835 |
| ScaI | AGTACT | 1 cut(s) | 933 |
| SchI | GAGTC | 7 cut(s) | 133, 365, 391, 782, 956, 1920, 2164 |
| ScrFI | CCNGG | 4 cut(s) | 681, 726, 1890, 1980 |
| SduI | GDGCHC | 2 cut(s) | 1167, 1431 |
| SfaNI | GCATC | 4 cut(s) | 445, 986, 1543, 1696 |
| SfcI | CTRYAG | 1 cut(s) | 2215 |
| SfuI | TTCGAA | 1 cut(s) | 11 |
| SinI | GGWCC | 3 cut(s) | 722, 1604, 1835 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1071 |
| SmlI | CTYRAG | 1 cut(s) | 842 |
| SmoI | CTYRAG | 1 cut(s) | 842 |
| SsiI | CCGC | 1 cut(s) | 2305 |
| SspI | AATATT | 1 cut(s) | 76 |
| SspMI | CTAG | 6 cut(s) | 795, 1325, 1484, 1550, 1668, 2354 |
| StyD4I | CCNGG | 4 cut(s) | 679, 724, 1888, 1978 |
| StyI | CCWWGG | 1 cut(s) | 477 |
| TaaI | ACNGT | 3 cut(s) | 1274, 1498, 1752 |
| TaiI | ACGT | 2 cut(s) | 2109, 2377 |
| TaqI | TCGA | 5 cut(s) | 11, 35, 339, 657, 1930 |
| TatI | WGTACW | 2 cut(s) | 673, 931 |
| TfiI | GAWTC | 8 cut(s) | 974, 1394, 1447, 1487, 1817, 1927, 2162, 2220 |
| TscAI | CASTG | 5 cut(s) | 997, 1104, 1501, 1597, 1819 |
| TseFI | GTSAC | 1 cut(s) | 1498 |
| TseI | GCWGC | 5 cut(s) | 332, 458, 502, 711, 773 |
| Tsp45I | GTSAC | 1 cut(s) | 1498 |
| TspGWI | ACGGA | 1 cut(s) | 1345 |
| TspRI | CASTG | 5 cut(s) | 997, 1104, 1501, 1597, 1819 |
| Vha464I | CTTAAG | 1 cut(s) | 842 |
| VpaK11BI | GGWCC | 3 cut(s) | 722, 1604, 1835 |
| XbaI | TCTAGA | 1 cut(s) | 1667 |
| XmiI | GTMKAC | 1 cut(s) | 1880 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1446, 1473, 2100 |
| XspI | CTAG | 6 cut(s) | 795, 1325, 1484, 1550, 1668, 2354 |
| ZrmI | AGTACT | 1 cut(s) | 933 |
| Zsp2I | ATGCAT | 1 cut(s) | 1231 |