gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 51 - 201 | 2.5e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 145 |
| Acc36I | ACCTGC | 2 cut(s) | 145, 516 |
| AccI | GTMKAC | 1 cut(s) | 108 |
| AcsI | RAATTY | 1 cut(s) | 647 |
| AfaI | GTAC | 1 cut(s) | 608 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 47, 169, 724 |
| AgsI | TTSAA | 3 cut(s) | 439, 550, 575 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 541 |
| AjnI | CCWGG | 1 cut(s) | 162 |
| AluBI | AGCT | 9 cut(s) | 14, 156, 275, 283, 326, 431, 556, 705, 750 |
| AluI | AGCT | 9 cut(s) | 14, 156, 275, 283, 326, 431, 556, 705, 750 |
| Alw21I | GWGCWC | 1 cut(s) | 285 |
| Alw26I | GTCTC | 2 cut(s) | 323, 676 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 207 |
| AoxI | GGCC | 1 cut(s) | 778 |
| ApeKI | GCWGC | 4 cut(s) | 128, 340, 431, 698 |
| ApoI | RAATTY | 1 cut(s) | 647 |
| AseI | ATTAAT | 1 cut(s) | 96 |
| AspS9I | GGNCC | 1 cut(s) | 543 |
| AsuHPI | GGTGA | 2 cut(s) | 290, 460 |
| AsuNHI | GCTAGC | 1 cut(s) | 701 |
| AvaII | GGWCC | 1 cut(s) | 543 |
| BanII | GRGCYC | 1 cut(s) | 285 |
| Bbv12I | GWGCWC | 1 cut(s) | 285 |
| BbvI | GCAGC | 4 cut(s) | 115, 327, 418, 685 |
| BccI | CCATC | 2 cut(s) | 227, 251 |
| BciT130I | CCWGG | 1 cut(s) | 164 |
| BcoDI | GTCTC | 2 cut(s) | 323, 676 |
| BfaI | CTAG | 1 cut(s) | 702 |
| BfmI | CTRYAG | 1 cut(s) | 208 |
| BfuAI | ACCTGC | 2 cut(s) | 145, 516 |
| BglII | AGATCT | 1 cut(s) | 82 |
| BisI | GCNGC | 4 cut(s) | 129, 341, 432, 699 |
| BlsI | GCNGC | 4 cut(s) | 130, 342, 433, 700 |
| Bme1390I | CCNGG | 1 cut(s) | 164 |
| Bme18I | GGWCC | 1 cut(s) | 543 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 541 |
| BmgT120I | GGNCC | 1 cut(s) | 543 |
| BmrFI | CCNGG | 1 cut(s) | 164 |
| BmrI | ACTGGG | 2 cut(s) | 121, 823 |
| BmsI | GCATC | 2 cut(s) | 33, 264 |
| BmtI | GCTAGC | 1 cut(s) | 705 |
| BmuI | ACTGGG | 2 cut(s) | 121, 823 |
| BsaBI | GATNNNNATC | 1 cut(s) | 413 |
| BsaI | GGTCTC | 1 cut(s) | 323 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 47, 169, 724 |
| Bse1I | ACTGG | 4 cut(s) | 116, 424, 496, 818 |
| Bse8I | GATNNNNATC | 1 cut(s) | 413 |
| BseBI | CCWGG | 1 cut(s) | 164 |
| BseGI | GGATG | 3 cut(s) | 24, 255, 457 |
| BseJI | GATNNNNATC | 1 cut(s) | 413 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 47, 169, 724 |
| BseMII | CTCAG | 4 cut(s) | 58, 171, 318, 653 |
| BseNI | ACTGG | 4 cut(s) | 116, 424, 496, 818 |
| BseRI | GAGGAG | 1 cut(s) | 697 |
| BseXI | GCAGC | 4 cut(s) | 115, 327, 418, 685 |
| BseYI | CCCAGC | 1 cut(s) | 343 |
| BsgI | GTGCAG | 2 cut(s) | 114, 123 |
| BshFI | GGCC | 1 cut(s) | 780 |
| BsiHKAI | GWGCWC | 1 cut(s) | 285 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 47, 169, 724 |
| BsmAI | GTCTC | 2 cut(s) | 323, 676 |
| BsnI | GGCC | 1 cut(s) | 780 |
| Bso31I | GGTCTC | 1 cut(s) | 323 |
| Bsp1286I | GDGCHC | 1 cut(s) | 285 |
| Bsp143I | GATC | 1 cut(s) | 82 |
| BspANI | GGCC | 1 cut(s) | 780 |
| BspCNI | CTCAG | 4 cut(s) | 57, 170, 319, 652 |
| BspMI | ACCTGC | 2 cut(s) | 145, 516 |
| BspOI | GCTAGC | 1 cut(s) | 705 |
| BspQI | GCTCTTC | 1 cut(s) | 740 |
| BspTNI | GGTCTC | 1 cut(s) | 323 |
| BsrI | ACTGG | 4 cut(s) | 116, 424, 496, 818 |
| BssMI | GATC | 1 cut(s) | 82 |
| Bst2UI | CCWGG | 1 cut(s) | 164 |
| Bst4CI | ACNGT | 4 cut(s) | 124, 313, 619, 797 |
| Bst6I | CTCTTC | 2 cut(s) | 740, 782 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 137 |
| BstC8I | GCNNGC | 3 cut(s) | 291, 338, 703 |
| BstDEI | CTNAG | 6 cut(s) | 44, 157, 327, 639, 711, 720 |
| BstF5I | GGATG | 3 cut(s) | 24, 255, 457 |
| BstKTI | GATC | 1 cut(s) | 85 |
| BstMAI | GTCTC | 2 cut(s) | 323, 676 |
| BstMBI | GATC | 1 cut(s) | 82 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 137, 683, 756, 765 |
| BstNI | CCWGG | 1 cut(s) | 164 |
| BstNSI | RCATGY | 1 cut(s) | 340 |
| BstSCI | CCNGG | 1 cut(s) | 162 |
| BstSFI | CTRYAG | 1 cut(s) | 208 |
| BstV1I | GCAGC | 4 cut(s) | 115, 327, 418, 685 |
| BstX2I | RGATCY | 1 cut(s) | 82 |
| BstYI | RGATCY | 1 cut(s) | 82 |
| BsuRI | GGCC | 1 cut(s) | 780 |
| BtsCI | GGATG | 3 cut(s) | 24, 255, 457 |
| BtsI | GCAGTG | 1 cut(s) | 609 |
| BtsIMutI | CAGTG | 4 cut(s) | 52, 144, 609, 647 |
| BveI | ACCTGC | 2 cut(s) | 145, 516 |
| Cac8I | GCNNGC | 3 cut(s) | 291, 338, 703 |
| CaiI | CAGNNNCTG | 1 cut(s) | 207 |
| Cfr13I | GGNCC | 1 cut(s) | 543 |
| Csp6I | GTAC | 1 cut(s) | 607 |
| CviAII | CATG | 8 cut(s) | 7, 232, 337, 373, 400, 442, 736, 784 |
| CviQI | GTAC | 1 cut(s) | 607 |
| DdeI | CTNAG | 6 cut(s) | 44, 157, 327, 639, 711, 720 |
| DpnI | GATC | 1 cut(s) | 84 |
| DpnII | GATC | 1 cut(s) | 82 |
| DriI | GACNNNNNGTC | 1 cut(s) | 541 |
| Eam1104I | CTCTTC | 2 cut(s) | 740, 782 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 541 |
| EarI | CTCTTC | 2 cut(s) | 740, 782 |
| Ecl136II | GAGCTC | 1 cut(s) | 283 |
| Eco24I | GRGCYC | 1 cut(s) | 285 |
| Eco31I | GGTCTC | 1 cut(s) | 323 |
| Eco47I | GGWCC | 1 cut(s) | 543 |
| Eco53kI | GAGCTC | 1 cut(s) | 283 |
| EcoICRI | GAGCTC | 1 cut(s) | 283 |
| EcoRII | CCWGG | 1 cut(s) | 162 |
| EcoT38I | GRGCYC | 1 cut(s) | 285 |
| FaeI | CATG | 8 cut(s) | 10, 235, 340, 376, 403, 445, 739, 787 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 530, 562, 734, 766, 746, 778 |
| FatI | CATG | 8 cut(s) | 6, 231, 336, 372, 399, 441, 735, 783 |
| FblI | GTMKAC | 1 cut(s) | 108 |
| Fnu4HI | GCNGC | 4 cut(s) | 129, 341, 432, 699 |
| FokI | GGATG | 3 cut(s) | 11, 242, 464 |
| FriOI | GRGCYC | 1 cut(s) | 285 |
| Fsp4HI | GCNGC | 4 cut(s) | 129, 341, 432, 699 |
| FspBI | CTAG | 1 cut(s) | 702 |
| GluI | GCNGC | 4 cut(s) | 129, 341, 432, 699 |
| GsaI | CCCAGC | 1 cut(s) | 347 |
| HaeIII | GGCC | 1 cut(s) | 780 |
| Hin1II | CATG | 8 cut(s) | 10, 235, 340, 376, 403, 445, 739, 787 |
| HincII | GTYRAC | 1 cut(s) | 216 |
| HindII | GTYRAC | 1 cut(s) | 216 |
| HinfI | GANTC | 2 cut(s) | 204, 622 |
| HphI | GGTGA | 2 cut(s) | 290, 460 |
| Hpy166II | GTNNAC | 4 cut(s) | 109, 216, 609, 733 |
| Hpy188I | TCNGA | 4 cut(s) | 160, 238, 389, 627 |
| Hpy188III | TCNNGA | 2 cut(s) | 449, 575 |
| Hpy8I | GTNNAC | 4 cut(s) | 109, 216, 609, 733 |
| HpyAV | CCTTC | 2 cut(s) | 718, 770 |
| HpyCH4III | ACNGT | 4 cut(s) | 124, 313, 619, 797 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 137, 683, 756, 765 |
| HpyF3I | CTNAG | 6 cut(s) | 44, 157, 327, 639, 711, 720 |
| Hsp92II | CATG | 8 cut(s) | 10, 235, 340, 376, 403, 445, 739, 787 |
| Kzo9I | GATC | 1 cut(s) | 82 |
| LguI | GCTCTTC | 1 cut(s) | 740 |
| LmnI | GCTCC | 3 cut(s) | 19, 710, 841 |
| Lsp1109I | GCAGC | 4 cut(s) | 115, 327, 418, 685 |
| LweI | GCATC | 2 cut(s) | 33, 264 |
| MaeI | CTAG | 1 cut(s) | 702 |
| MalI | GATC | 1 cut(s) | 84 |
| MboI | GATC | 1 cut(s) | 82 |
| MboII | GAAGA | 4 cut(s) | 590, 754, 757, 799 |
| MflI | RGATCY | 1 cut(s) | 82 |
| MhlI | GDGCHC | 1 cut(s) | 285 |
| MluCI | AATT | 3 cut(s) | 36, 588, 647 |
| MnlI | CCTC | 7 cut(s) | 53, 63, 67, 648, 688, 718, 793 |
| MseI | TTAA | 4 cut(s) | 96, 224, 480, 753 |
| MslI | CAYNNNNRTG | 1 cut(s) | 404 |
| MspR9I | CCNGG | 1 cut(s) | 164 |
| MvaI | CCWGG | 1 cut(s) | 164 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 137, 683, 756, 765 |
| NdeII | GATC | 1 cut(s) | 82 |
| NheI | GCTAGC | 1 cut(s) | 701 |
| NlaIII | CATG | 8 cut(s) | 10, 235, 340, 376, 403, 445, 739, 787 |
| NspI | RCATGY | 1 cut(s) | 340 |
| PaeI | GCATGC | 1 cut(s) | 340 |
| PaqCI | CACCTGC | 1 cut(s) | 145 |
| PciSI | GCTCTTC | 1 cut(s) | 740 |
| PfeI | GAWTC | 2 cut(s) | 204, 622 |
| PkrI | GCNGC | 4 cut(s) | 130, 342, 433, 700 |
| PshBI | ATTAAT | 1 cut(s) | 96 |
| Psp124BI | GAGCTC | 1 cut(s) | 285 |
| Psp6I | CCWGG | 1 cut(s) | 162 |
| PspFI | CCCAGC | 1 cut(s) | 343 |
| PspGI | CCWGG | 1 cut(s) | 162 |
| PspPI | GGNCC | 1 cut(s) | 543 |
| PstNI | CAGNNNCTG | 1 cut(s) | 207 |
| PsuI | RGATCY | 1 cut(s) | 82 |
| RsaI | GTAC | 1 cut(s) | 608 |
| RsaNI | GTAC | 1 cut(s) | 607 |
| RseI | CAYNNNNRTG | 1 cut(s) | 404 |
| SacI | GAGCTC | 1 cut(s) | 285 |
| SapI | GCTCTTC | 1 cut(s) | 740 |
| SaqAI | TTAA | 4 cut(s) | 96, 224, 480, 753 |
| SatI | GCNGC | 4 cut(s) | 129, 341, 432, 699 |
| Sau3AI | GATC | 1 cut(s) | 82 |
| Sau96I | GGNCC | 1 cut(s) | 543 |
| ScrFI | CCNGG | 1 cut(s) | 164 |
| SduI | GDGCHC | 1 cut(s) | 285 |
| SfaNI | GCATC | 2 cut(s) | 33, 264 |
| SfcI | CTRYAG | 1 cut(s) | 208 |
| SinI | GGWCC | 1 cut(s) | 543 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 404 |
| SphI | GCATGC | 1 cut(s) | 340 |
| Sse9I | AATT | 3 cut(s) | 36, 588, 647 |
| SspMI | CTAG | 1 cut(s) | 702 |
| SstI | GAGCTC | 1 cut(s) | 285 |
| StyD4I | CCNGG | 1 cut(s) | 162 |
| TaaI | ACNGT | 4 cut(s) | 124, 313, 619, 797 |
| TasI | AATT | 3 cut(s) | 36, 588, 647 |
| TatI | WGTACW | 1 cut(s) | 606 |
| TfiI | GAWTC | 2 cut(s) | 204, 622 |
| Tru1I | TTAA | 4 cut(s) | 96, 224, 480, 753 |
| Tru9I | TTAA | 4 cut(s) | 96, 224, 480, 753 |
| TscAI | CASTG | 4 cut(s) | 52, 151, 616, 647 |
| TseI | GCWGC | 4 cut(s) | 128, 340, 431, 698 |
| TspDTI | ATGAA | 9 cut(s) | 17, 82, 165, 377, 389, 468, 752, 800, 824 |
| TspRI | CASTG | 4 cut(s) | 52, 151, 616, 647 |
| VpaK11BI | GGWCC | 1 cut(s) | 543 |
| VspI | ATTAAT | 1 cut(s) | 96 |
| XapI | RAATTY | 1 cut(s) | 647 |
| XceI | RCATGY | 1 cut(s) | 340 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 340 |
| XmiI | GTMKAC | 1 cut(s) | 108 |
| XspI | CTAG | 1 cut(s) | 702 |