gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 5 - 147 | 4.9e-17 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 344 |
| AcuI | CTGAAG | 1 cut(s) | 269 |
| AfaI | GTAC | 1 cut(s) | 131 |
| AflII | CTTAAG | 2 cut(s) | 284, 356 |
| AgsI | TTSAA | 2 cut(s) | 344, 397 |
| AjnI | CCWGG | 1 cut(s) | 420 |
| AluBI | AGCT | 8 cut(s) | 23, 61, 122, 146, 269, 274, 355, 403 |
| AluI | AGCT | 8 cut(s) | 23, 61, 122, 146, 269, 274, 355, 403 |
| Alw26I | GTCTC | 1 cut(s) | 170 |
| Ama87I | CYCGRG | 1 cut(s) | 107 |
| ApeKI | GCWGC | 1 cut(s) | 20 |
| ApoI | RAATTY | 1 cut(s) | 344 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 436 |
| AvaI | CYCGRG | 1 cut(s) | 107 |
| BbsI | GAAGAC | 1 cut(s) | 309 |
| BbvI | GCAGC | 1 cut(s) | 32 |
| BccI | CCATC | 1 cut(s) | 455 |
| BciT130I | CCWGG | 1 cut(s) | 422 |
| BclI | TGATCA | 1 cut(s) | 349 |
| BcoDI | GTCTC | 1 cut(s) | 170 |
| BfaI | CTAG | 3 cut(s) | 24, 123, 320 |
| BfrI | CTTAAG | 2 cut(s) | 284, 356 |
| BglII | AGATCT | 1 cut(s) | 51 |
| BisI | GCNGC | 1 cut(s) | 21 |
| BlpI | GCTNAGC | 1 cut(s) | 270 |
| BlsI | GCNGC | 1 cut(s) | 22 |
| Bme1390I | CCNGG | 1 cut(s) | 422 |
| BmeT110I | CYCGRG | 1 cut(s) | 107 |
| BmrFI | CCNGG | 1 cut(s) | 422 |
| BmrI | ACTGGG | 1 cut(s) | 43 |
| BmsI | GCATC | 1 cut(s) | 306 |
| BmuI | ACTGGG | 1 cut(s) | 43 |
| BpiI | GAAGAC | 1 cut(s) | 309 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 258, 290 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 270 |
| BsaBI | GATNNNNATC | 1 cut(s) | 230 |
| BsaJI | CCNNGG | 1 cut(s) | 294 |
| Bse1I | ACTGG | 2 cut(s) | 38, 196 |
| Bse8I | GATNNNNATC | 1 cut(s) | 230 |
| BseBI | CCWGG | 1 cut(s) | 422 |
| BseDI | CCNNGG | 1 cut(s) | 294 |
| BseGI | GGATG | 1 cut(s) | 447 |
| BseJI | GATNNNNATC | 1 cut(s) | 230 |
| BseMII | CTCAG | 2 cut(s) | 138, 165 |
| BseNI | ACTGG | 2 cut(s) | 38, 196 |
| BseXI | GCAGC | 1 cut(s) | 32 |
| BsgI | GTGCAG | 1 cut(s) | 39 |
| BsiHKCI | CYCGRG | 1 cut(s) | 107 |
| BsmAI | GTCTC | 1 cut(s) | 170 |
| BsoBI | CYCGRG | 1 cut(s) | 107 |
| Bsp143I | GATC | 2 cut(s) | 51, 349 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 270 |
| Bsp19I | CCATGG | 1 cut(s) | 294 |
| BspCNI | CTCAG | 2 cut(s) | 139, 166 |
| BspTI | CTTAAG | 2 cut(s) | 284, 356 |
| BsrI | ACTGG | 2 cut(s) | 38, 196 |
| BssECI | CCNNGG | 1 cut(s) | 294 |
| BssMI | GATC | 2 cut(s) | 51, 349 |
| BssT1I | CCWWGG | 1 cut(s) | 294 |
| Bst2UI | CCWGG | 1 cut(s) | 422 |
| BstAFI | CTTAAG | 2 cut(s) | 284, 356 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 3 cut(s) | 147, 174, 270 |
| BstDSI | CCRYGG | 1 cut(s) | 294 |
| BstEII | GGTNACC | 1 cut(s) | 442 |
| BstF5I | GGATG | 1 cut(s) | 447 |
| BstKTI | GATC | 2 cut(s) | 54, 352 |
| BstMAI | GTCTC | 1 cut(s) | 170 |
| BstMBI | GATC | 2 cut(s) | 51, 349 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 179 |
| BstNI | CCWGG | 1 cut(s) | 422 |
| BstPI | GGTNACC | 1 cut(s) | 442 |
| BstSCI | CCNGG | 1 cut(s) | 420 |
| BstV1I | GCAGC | 1 cut(s) | 32 |
| BstV2I | GAAGAC | 1 cut(s) | 309 |
| BstX2I | RGATCY | 1 cut(s) | 51 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 203 |
| BstYI | RGATCY | 1 cut(s) | 51 |
| BtgI | CCRYGG | 1 cut(s) | 294 |
| BtsCI | GGATG | 1 cut(s) | 447 |
| BtsI | GCAGTG | 1 cut(s) | 276 |
| BtsIMutI | CAGTG | 1 cut(s) | 276 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| Csp6I | GTAC | 1 cut(s) | 130 |
| CviAII | CATG | 5 cut(s) | 184, 203, 295, 307, 428 |
| CviJI | RGCY | 9 cut(s) | 23, 61, 122, 146, 173, 269, 274, 355, 403 |
| CviKI_1 | RGCY | 9 cut(s) | 23, 61, 122, 146, 173, 269, 274, 355, 403 |
| CviQI | GTAC | 1 cut(s) | 130 |
| DdeI | CTNAG | 3 cut(s) | 147, 174, 270 |
| DpnI | GATC | 2 cut(s) | 53, 351 |
| DpnII | GATC | 2 cut(s) | 51, 349 |
| Eco130I | CCWWGG | 1 cut(s) | 294 |
| Eco57I | CTGAAG | 1 cut(s) | 269 |
| Eco88I | CYCGRG | 1 cut(s) | 107 |
| Eco91I | GGTNACC | 1 cut(s) | 442 |
| EcoO65I | GGTNACC | 1 cut(s) | 442 |
| EcoRII | CCWGG | 1 cut(s) | 420 |
| EcoT14I | CCWWGG | 1 cut(s) | 294 |
| ErhI | CCWWGG | 1 cut(s) | 294 |
| FaeI | CATG | 5 cut(s) | 187, 206, 298, 310, 431 |
| FatI | CATG | 5 cut(s) | 183, 202, 294, 306, 427 |
| FbaI | TGATCA | 1 cut(s) | 349 |
| Fnu4HI | GCNGC | 1 cut(s) | 21 |
| FokI | GGATG | 1 cut(s) | 434 |
| Fsp4HI | GCNGC | 1 cut(s) | 21 |
| FspBI | CTAG | 3 cut(s) | 24, 123, 320 |
| GluI | GCNGC | 1 cut(s) | 21 |
| Hin1II | CATG | 5 cut(s) | 187, 206, 298, 310, 431 |
| HphI | GGTGA | 2 cut(s) | 49, 436 |
| Hpy166II | GTNNAC | 2 cut(s) | 156, 390 |
| Hpy188I | TCNGA | 3 cut(s) | 85, 249, 327 |
| Hpy188III | TCNNGA | 3 cut(s) | 107, 157, 451 |
| Hpy8I | GTNNAC | 2 cut(s) | 156, 390 |
| HpyCH4V | TGCA | 2 cut(s) | 20, 202 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 179 |
| HpyF3I | CTNAG | 3 cut(s) | 147, 174, 270 |
| Hsp92II | CATG | 5 cut(s) | 187, 206, 298, 310, 431 |
| Ksp22I | TGATCA | 1 cut(s) | 349 |
| Kzo9I | GATC | 2 cut(s) | 51, 349 |
| LmnI | GCTCC | 2 cut(s) | 266, 424 |
| LpnPI | CCDG | 6 cut(s) | 19, 209, 220, 351, 407, 434 |
| Lsp1109I | GCAGC | 1 cut(s) | 32 |
| LweI | GCATC | 1 cut(s) | 306 |
| MaeI | CTAG | 3 cut(s) | 24, 123, 320 |
| MaeIII | GTNAC | 2 cut(s) | 164, 442 |
| MalI | GATC | 2 cut(s) | 53, 351 |
| MboI | GATC | 2 cut(s) | 51, 349 |
| MboII | GAAGA | 3 cut(s) | 235, 262, 314 |
| MflI | RGATCY | 1 cut(s) | 51 |
| MluCI | AATT | 3 cut(s) | 344, 405, 435 |
| MnlI | CCTC | 5 cut(s) | 66, 144, 204, 292, 344 |
| MseI | TTAA | 3 cut(s) | 285, 357, 438 |
| MslI | CAYNNNNRTG | 2 cut(s) | 68, 311 |
| MspCI | CTTAAG | 2 cut(s) | 284, 356 |
| MspR9I | CCNGG | 1 cut(s) | 422 |
| MvaI | CCWGG | 1 cut(s) | 422 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 179 |
| NcoI | CCATGG | 1 cut(s) | 294 |
| NdeII | GATC | 2 cut(s) | 51, 349 |
| NlaIII | CATG | 5 cut(s) | 187, 206, 298, 310, 431 |
| NmuCI | GTSAC | 2 cut(s) | 164, 442 |
| PflFI | GACNNNGTC | 1 cut(s) | 79 |
| PfoI | TCCNGGA | 1 cut(s) | 420 |
| PkrI | GCNGC | 1 cut(s) | 22 |
| Psp6I | CCWGG | 1 cut(s) | 420 |
| PspEI | GGTNACC | 1 cut(s) | 442 |
| PspGI | CCWGG | 1 cut(s) | 420 |
| PsuI | RGATCY | 1 cut(s) | 51 |
| PsyI | GACNNNGTC | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 131 |
| RsaNI | GTAC | 1 cut(s) | 130 |
| RseI | CAYNNNNRTG | 2 cut(s) | 68, 311 |
| SaqAI | TTAA | 3 cut(s) | 285, 357, 438 |
| SatI | GCNGC | 1 cut(s) | 21 |
| Sau3AI | GATC | 2 cut(s) | 51, 349 |
| ScrFI | CCNGG | 1 cut(s) | 422 |
| SfaNI | GCATC | 1 cut(s) | 306 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 68, 311 |
| SmlI | CTYRAG | 2 cut(s) | 284, 356 |
| SmoI | CTYRAG | 2 cut(s) | 284, 356 |
| Sse9I | AATT | 3 cut(s) | 344, 405, 435 |
| SspMI | CTAG | 3 cut(s) | 24, 123, 320 |
| StyD4I | CCNGG | 1 cut(s) | 420 |
| StyI | CCWWGG | 1 cut(s) | 294 |
| TasI | AATT | 3 cut(s) | 344, 405, 435 |
| Tru1I | TTAA | 3 cut(s) | 285, 357, 438 |
| Tru9I | TTAA | 3 cut(s) | 285, 357, 438 |
| TscAI | CASTG | 1 cut(s) | 283 |
| TseFI | GTSAC | 2 cut(s) | 164, 442 |
| TseI | GCWGC | 1 cut(s) | 20 |
| Tsp45I | GTSAC | 2 cut(s) | 164, 442 |
| TspDTI | ATGAA | 2 cut(s) | 236, 242 |
| TspRI | CASTG | 1 cut(s) | 283 |
| Tth111I | GACNNNGTC | 1 cut(s) | 79 |
| Vha464I | CTTAAG | 2 cut(s) | 284, 356 |
| XapI | RAATTY | 1 cut(s) | 344 |
| XspI | CTAG | 3 cut(s) | 24, 123, 320 |