gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 23 - 169 | 7.3e-15 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 102 |
| Acc36I | ACCTGC | 1 cut(s) | 61 |
| AccB1I | GGYRCC | 1 cut(s) | 737 |
| AccI | GTMKAC | 1 cut(s) | 543 |
| AcsI | RAATTY | 2 cut(s) | 22, 224 |
| AcuI | CTGAAG | 2 cut(s) | 267, 513 |
| AfaI | GTAC | 1 cut(s) | 490 |
| AgsI | TTSAA | 1 cut(s) | 389 |
| AjnI | CCWGG | 1 cut(s) | 204 |
| AluBI | AGCT | 6 cut(s) | 212, 245, 346, 427, 438, 574 |
| AluI | AGCT | 6 cut(s) | 212, 245, 346, 427, 438, 574 |
| AoxI | GGCC | 1 cut(s) | 126 |
| ApeKI | GCWGC | 1 cut(s) | 599 |
| ApoI | RAATTY | 2 cut(s) | 22, 224 |
| AspS9I | GGNCC | 1 cut(s) | 127 |
| AsuHPI | GGTGA | 1 cut(s) | 55 |
| BaeGI | GKGCMC | 1 cut(s) | 740 |
| BanI | GGYRCC | 1 cut(s) | 737 |
| BbvI | GCAGC | 1 cut(s) | 586 |
| BccI | CCATC | 1 cut(s) | 491 |
| BciT130I | CCWGG | 1 cut(s) | 206 |
| BfmI | CTRYAG | 1 cut(s) | 213 |
| BfuAI | ACCTGC | 1 cut(s) | 61 |
| BisI | GCNGC | 1 cut(s) | 600 |
| BlsI | GCNGC | 1 cut(s) | 601 |
| Bme1390I | CCNGG | 1 cut(s) | 206 |
| BmgT120I | GGNCC | 1 cut(s) | 127 |
| BmiI | GGNNCC | 2 cut(s) | 464, 739 |
| BmrFI | CCNGG | 1 cut(s) | 206 |
| BmsI | GCATC | 1 cut(s) | 351 |
| BpuEI | CTTGAG | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 1 cut(s) | 741 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 509, 539 |
| Bse1I | ACTGG | 1 cut(s) | 637 |
| BseBI | CCWGG | 1 cut(s) | 206 |
| BseDI | CCNNGG | 1 cut(s) | 741 |
| BseMII | CTCAG | 1 cut(s) | 461 |
| BseNI | ACTGG | 1 cut(s) | 637 |
| BseRI | GAGGAG | 1 cut(s) | 746 |
| BseSI | GKGCMC | 1 cut(s) | 740 |
| BseXI | GCAGC | 1 cut(s) | 586 |
| BshFI | GGCC | 1 cut(s) | 128 |
| BshNI | GGYRCC | 1 cut(s) | 737 |
| BsmI | GAATGC | 1 cut(s) | 21 |
| BsnI | GGCC | 1 cut(s) | 128 |
| Bsp1286I | GDGCHC | 1 cut(s) | 740 |
| Bsp143I | GATC | 1 cut(s) | 82 |
| BspANI | GGCC | 1 cut(s) | 128 |
| BspCNI | CTCAG | 1 cut(s) | 460 |
| BspLI | GGNNCC | 2 cut(s) | 464, 739 |
| BspMI | ACCTGC | 1 cut(s) | 61 |
| BspT107I | GGYRCC | 1 cut(s) | 737 |
| BsrI | ACTGG | 1 cut(s) | 637 |
| BssECI | CCNNGG | 1 cut(s) | 741 |
| BssMI | GATC | 1 cut(s) | 82 |
| Bst2UI | CCWGG | 1 cut(s) | 206 |
| Bst4CI | ACNGT | 4 cut(s) | 122, 163, 532, 596 |
| Bst6I | CTCTTC | 1 cut(s) | 671 |
| BstC8I | GCNNGC | 1 cut(s) | 425 |
| BstDEI | CTNAG | 1 cut(s) | 447 |
| BstKTI | GATC | 1 cut(s) | 85 |
| BstMBI | GATC | 1 cut(s) | 82 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 654 |
| BstNI | CCWGG | 1 cut(s) | 206 |
| BstNSI | RCATGY | 2 cut(s) | 395, 566 |
| BstSCI | CCNGG | 1 cut(s) | 204 |
| BstSFI | CTRYAG | 1 cut(s) | 213 |
| BstSLI | GKGCMC | 1 cut(s) | 740 |
| BstV1I | GCAGC | 1 cut(s) | 586 |
| BsuRI | GGCC | 1 cut(s) | 128 |
| BtsIMutI | CAGTG | 1 cut(s) | 395 |
| BveI | ACCTGC | 1 cut(s) | 61 |
| Cac8I | GCNNGC | 1 cut(s) | 425 |
| Cfr13I | GGNCC | 1 cut(s) | 127 |
| Csp6I | GTAC | 1 cut(s) | 489 |
| CviAII | CATG | 4 cut(s) | 151, 392, 551, 563 |
| CviQI | GTAC | 1 cut(s) | 489 |
| DdeI | CTNAG | 1 cut(s) | 447 |
| DpnI | GATC | 1 cut(s) | 84 |
| DpnII | GATC | 1 cut(s) | 82 |
| DraI | TTTAAA | 1 cut(s) | 229 |
| Eam1104I | CTCTTC | 1 cut(s) | 671 |
| EarI | CTCTTC | 1 cut(s) | 671 |
| Eco57I | CTGAAG | 2 cut(s) | 267, 513 |
| EcoRII | CCWGG | 1 cut(s) | 204 |
| FaeI | CATG | 4 cut(s) | 154, 395, 554, 566 |
| FatI | CATG | 4 cut(s) | 150, 391, 550, 562 |
| FauNDI | CATATG | 1 cut(s) | 672 |
| FblI | GTMKAC | 1 cut(s) | 543 |
| Fnu4HI | GCNGC | 1 cut(s) | 600 |
| Fsp4HI | GCNGC | 1 cut(s) | 600 |
| GluI | GCNGC | 1 cut(s) | 600 |
| HaeIII | GGCC | 1 cut(s) | 128 |
| Hin1II | CATG | 4 cut(s) | 154, 395, 554, 566 |
| HincII | GTYRAC | 2 cut(s) | 528, 544 |
| HindII | GTYRAC | 2 cut(s) | 528, 544 |
| HphI | GGTGA | 1 cut(s) | 55 |
| Hpy166II | GTNNAC | 4 cut(s) | 528, 535, 544, 724 |
| Hpy188I | TCNGA | 2 cut(s) | 87, 450 |
| Hpy8I | GTNNAC | 4 cut(s) | 528, 535, 544, 724 |
| HpyAV | CCTTC | 3 cut(s) | 178, 280, 445 |
| HpyCH4III | ACNGT | 4 cut(s) | 122, 163, 532, 596 |
| HpyCH4V | TGCA | 5 cut(s) | 19, 43, 265, 395, 657 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 654 |
| HpyF3I | CTNAG | 1 cut(s) | 447 |
| Hsp92II | CATG | 4 cut(s) | 154, 395, 554, 566 |
| Kzo9I | GATC | 1 cut(s) | 82 |
| LmnI | GCTCC | 1 cut(s) | 462 |
| Lsp1109I | GCAGC | 1 cut(s) | 586 |
| LweI | GCATC | 1 cut(s) | 351 |
| MaeIII | GTNAC | 1 cut(s) | 692 |
| MalI | GATC | 1 cut(s) | 84 |
| MboI | GATC | 1 cut(s) | 82 |
| MboII | GAAGA | 3 cut(s) | 334, 506, 688 |
| MhlI | GDGCHC | 1 cut(s) | 740 |
| MluCI | AATT | 3 cut(s) | 22, 224, 700 |
| MnlI | CCTC | 8 cut(s) | 140, 262, 507, 672, 710, 724, 727, 736 |
| MseI | TTAA | 1 cut(s) | 228 |
| MspA1I | CMGCKG | 1 cut(s) | 427 |
| MspR9I | CCNGG | 1 cut(s) | 206 |
| Mva1269I | GAATGC | 1 cut(s) | 21 |
| MvaI | CCWGG | 1 cut(s) | 206 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 654 |
| NdeI | CATATG | 1 cut(s) | 672 |
| NdeII | GATC | 1 cut(s) | 82 |
| NlaIII | CATG | 4 cut(s) | 154, 395, 554, 566 |
| NlaIV | GGNNCC | 2 cut(s) | 464, 739 |
| NspI | RCATGY | 2 cut(s) | 395, 566 |
| PctI | GAATGC | 1 cut(s) | 21 |
| PflFI | GACNNNGTC | 1 cut(s) | 380 |
| PkrI | GCNGC | 1 cut(s) | 601 |
| PsiI | TTATAA | 1 cut(s) | 102 |
| Psp6I | CCWGG | 1 cut(s) | 204 |
| PspGI | CCWGG | 1 cut(s) | 204 |
| PspN4I | GGNNCC | 2 cut(s) | 464, 739 |
| PspPI | GGNCC | 1 cut(s) | 127 |
| PsyI | GACNNNGTC | 1 cut(s) | 380 |
| PvuII | CAGCTG | 1 cut(s) | 427 |
| RsaI | GTAC | 1 cut(s) | 490 |
| RsaNI | GTAC | 1 cut(s) | 489 |
| SalI | GTCGAC | 1 cut(s) | 542 |
| SaqAI | TTAA | 1 cut(s) | 228 |
| SatI | GCNGC | 1 cut(s) | 600 |
| Sau3AI | GATC | 1 cut(s) | 82 |
| Sau96I | GGNCC | 1 cut(s) | 127 |
| ScrFI | CCNGG | 1 cut(s) | 206 |
| SduI | GDGCHC | 1 cut(s) | 740 |
| SfaNI | GCATC | 1 cut(s) | 351 |
| SfcI | CTRYAG | 1 cut(s) | 213 |
| SmlI | CTYRAG | 1 cut(s) | 356 |
| SmoI | CTYRAG | 1 cut(s) | 356 |
| Sse9I | AATT | 3 cut(s) | 22, 224, 700 |
| SspI | AATATT | 1 cut(s) | 98 |
| StyD4I | CCNGG | 1 cut(s) | 204 |
| TaaI | ACNGT | 4 cut(s) | 122, 163, 532, 596 |
| TaqI | TCGA | 2 cut(s) | 273, 543 |
| TasI | AATT | 3 cut(s) | 22, 224, 700 |
| TatI | WGTACW | 1 cut(s) | 488 |
| Tru1I | TTAA | 1 cut(s) | 228 |
| Tru9I | TTAA | 1 cut(s) | 228 |
| TscAI | CASTG | 1 cut(s) | 402 |
| TseI | GCWGC | 1 cut(s) | 599 |
| TspDTI | ATGAA | 3 cut(s) | 252, 335, 689 |
| TspRI | CASTG | 1 cut(s) | 402 |
| Tth111I | GACNNNGTC | 1 cut(s) | 380 |
| XapI | RAATTY | 2 cut(s) | 22, 224 |
| XceI | RCATGY | 2 cut(s) | 395, 566 |
| XmiI | GTMKAC | 1 cut(s) | 543 |