Rmu_sc0002928.1_g000025

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002928.1
OG0000077
Physical Location & Seq
Forward (+)
175662 .. 178532
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002928.1_g000025.1.cds

Sequence Viewer

Length: 843 bp
atgaaaaccgaaccttcgacggcgagatggggaccggaggtggccggaatcgccggaaatcgacaaaagcttcaaactgcagccggaggaggttttgattcgatccgtggttttccgaccaaatcgtggaaaaccaaggttgctggggtgctcagagggaggaggcgctcctctggtgaccggtggcacgccctgtggtggccggaatcgccggaaatcggagggagagggaaaatggtcgaaccggagaagagagaggtcgggggagaggagagagaaagagctggggtgggtttccggaaatggaaacctaccgggaaggaaatcaaagacagagaacccaaaagaaagtcgtcaagagatctcaacattgaattccggcgaagcaggctccgaccagtgatgatgtcgacgcttcaaagcatctttgaatacccaatccaggactctattgtgactctaggacaaattcaaacgctaaatggctggaactataaaaaatggaggaatcgggttgagttttatctatctatgcaccataacatgggcttctgtttgattgaggagcagccccttgagctagatgtagagagtactgaggaagacaggaaatacagcaaaaagtggtataagtttagcaaaatggctaagaatgtcactagatgcactatgtctgatactgttagggggtctatagttgaacctgagctagctatggattttctagaggttatagttgacaagtatattgagagtgataaggcagaacgggctaagctttccaagaaattaaatgagctcatatactttgagaatgagaatgtgagagaacacatcatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

280

Amino Acids

32.64

Weight (kDa)

9.59

Isoelectric Point (pI)

71.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53670
fragaria_vesca FvH4_1g12751 FvH4_1g13491 FvH4_1g13491 FvH4_1g16302 FvH4_1g16303 FvH4_1g29161 FvH4_1g29941 FvH4_2g02290 FvH4_2g05985 FvH4_2g15841 FvH4_2g18261 FvH4_2g22761 FvH4_2g22761 FvH4_2g22761 FvH4_3g13432 FvH4_3g14801 FvH4_3g28581 FvH4_3g30611 FvH4_3g30611 FvH4_3g30611 FvH4_3g32571 FvH4_3g32571 FvH4_3g32571 FvH4_3g33631 FvH4_3g36663 FvH4_3g36664 FvH4_4g00961 FvH4_4g17672 FvH4_5g13441 FvH4_5g30231 FvH4_5g39263 FvH4_6g06661 FvH4_6g06662 FvH4_6g40841 FvH4_7g00732 FvH4_7g11331 FvH4_7g12361
malus_domestica MD02G1100700.v1.1 MD02G1280000.v1.1 MD03G1045100.v1.1 MD04G1043300.v1.1 MD05G1061800.v1.1 MD05G1118300.v1.1 MD05G1334900.v1.1 MD08G1232100.v1.1 MD10G1202700.v1.1 MD11G1016600.v1.1 MD11G1271900.v1.1 MD15G1002900.v1.1 MD15G1059300.v1.1
prunus_persica Prupe.1G445900_v2.0.a1 Prupe.4G244000_v2.0.a1 Prupe.6G221400_v2.0.a1 Prupe.6G301400_v2.0.a1 Prupe.7G031600_v2.0.a1 Prupe.8G017100_v2.0.a1
pyrus_communis pycom01g08140 pycom01g19130 pycom02g09810 pycom03g12420 pycom05g09140 pycom05g22780 pycom06g17440 pycom07g04850 pycom07g08300 pycom08g09110 pycom08g10760 pycom09g15580 pycom09g18260 pycom09g18400 pycom11g07380 pycom11g20370 pycom12g01630 pycom12g11730 pycom13g21040 pycom14g00290 pycom14g10520 pycom15g16640 pycom15g18720 pycom15g24540 pycom15g26360 pycom16g08100 pycom16g09950 pycom16g11700 pycom16g19690 pycom17g20400
rosa_chinensis RchiOBHm_Chr1g0317481 RchiOBHm_Chr1g0322601 RchiOBHm_Chr1g0324761 RchiOBHm_Chr1g0335001 RchiOBHm_Chr1g0336961 RchiOBHm_Chr1g0345341 RchiOBHm_Chr1g0348501 RchiOBHm_Chr1g0352591 RchiOBHm_Chr1g0354901 RchiOBHm_Chr1g0365141 RchiOBHm_Chr1g0365511 RchiOBHm_Chr1g0368471 RchiOBHm_Chr1g0373471 RchiOBHm_Chr1g0373951 RchiOBHm_Chr1g0375621 RchiOBHm_Chr1g0378491 RchiOBHm_Chr1g0383431 RchiOBHm_Chr2g0086291 RchiOBHm_Chr2g0096681 RchiOBHm_Chr2g0117391 RchiOBHm_Chr2g0121511 RchiOBHm_Chr2g0128511 RchiOBHm_Chr2g0159591 RchiOBHm_Chr2g0173271 RchiOBHm_Chr3g0453771 RchiOBHm_Chr3g0462071 RchiOBHm_Chr3g0467151 RchiOBHm_Chr3g0468531 RchiOBHm_Chr3g0478981 RchiOBHm_Chr3g0488371 RchiOBHm_Chr3g0496001 RchiOBHm_Chr3g0496651 RchiOBHm_Chr4g0390941 RchiOBHm_Chr4g0431251 RchiOBHm_Chr4g0441691 RchiOBHm_Chr5g0001181 RchiOBHm_Chr5g0001671 RchiOBHm_Chr5g0021461 RchiOBHm_Chr5g0045101 RchiOBHm_Chr5g0045461 RchiOBHm_Chr5g0063421 RchiOBHm_Chr5g0068061 RchiOBHm_Chr5g0069541 RchiOBHm_Chr5g0073131 RchiOBHm_Chr5g0076631 RchiOBHm_Chr5g0079181 RchiOBHm_Chr5g0082051 RchiOBHm_Chr6g0248451 RchiOBHm_Chr6g0255561 RchiOBHm_Chr6g0266491 RchiOBHm_Chr6g0268111 RchiOBHm_Chr6g0304521 RchiOBHm_Chr6g0306511 RchiOBHm_Chr7g0181641 RchiOBHm_Chr7g0181791 RchiOBHm_Chr7g0188321 RchiOBHm_Chr7g0194951 RchiOBHm_Chr7g0195071 RchiOBHm_Chr7g0199671 RchiOBHm_Chr7g0204631 RchiOBHm_Chr7g0231771 RchiOBHm_Chr7g0231831 RchiOBHm_Chr7g0242511
rosa_laevigata RLG00000015596 RLG00000021778 RLG00000028187
rosa_multiflora Rmu_co8285397.1_g000001 Rmu_co8301931.1_g000001 Rmu_co8376351.1_g000001 Rmu_co8412043.1_g000001 Rmu_sc0000079.1_g000006 Rmu_sc0000160.1_g000007 Rmu_sc0000208.1_g000006 Rmu_sc0000258.1_g000016 Rmu_sc0000295.1_g000008 Rmu_sc0000302.1_g000025 Rmu_sc0000423.1_g000039 Rmu_sc0000441.1_g000040 Rmu_sc0000538.1_g000074 Rmu_sc0000603.1_g000019 Rmu_sc0000611.1_g000018 Rmu_sc0000729.1_g000002 Rmu_sc0000837.1_g000044 Rmu_sc0000903.1_g000015 Rmu_sc0000924.1_g000029 Rmu_sc0001173.1_g000021 Rmu_sc0001289.1_g000004 Rmu_sc0001347.1_g000005 Rmu_sc0001464.1_g000020 Rmu_sc0001618.1_g000015 Rmu_sc0002014.1_g000002 Rmu_sc0002047.1_g000002 Rmu_sc0002160.1_g000029 Rmu_sc0002310.1_g000011 Rmu_sc0002416.1_g000002 Rmu_sc0002417.1_g000008 Rmu_sc0002445.1_g000008 Rmu_sc0002691.1_g000026 Rmu_sc0002700.1_g000021 Rmu_sc0002748.1_g000032 Rmu_sc0002792.1_g000048 Rmu_sc0002831.1_g000012 Rmu_sc0002928.1_g000025 Rmu_sc0002956.1_g000001 Rmu_sc0003170.1_g000039 Rmu_sc0003232.1_g000024 Rmu_sc0003391.1_g000014 Rmu_sc0003600.1_g000009 Rmu_sc0003630.1_g000064 Rmu_sc0003633.1_g000035 Rmu_sc0003802.1_g000001 Rmu_sc0003881.1_g000001 Rmu_sc0003989.1_g000001 Rmu_sc0004208.1_g000021 Rmu_sc0004815.1_g000004 Rmu_sc0004821.1_g000002 Rmu_sc0005237.1_g000004 Rmu_sc0005638.1_g000006 Rmu_sc0005996.1_g000004 Rmu_sc0006604.1_g000005 Rmu_sc0007023.1_g000007 Rmu_sc0007084.1_g000004 Rmu_sc0007239.1_g000001 Rmu_sc0007338.1_g000010 Rmu_sc0007398.1_g000004 Rmu_sc0007630.1_g000001 Rmu_sc0008067.1_g000001 Rmu_sc0008114.1_g000001 Rmu_sc0008623.1_g000008 Rmu_sc0009777.1_g000010 Rmu_sc0012719.1_g000001 Rmu_sc0014173.1_g000001 Rmu_sc0015338.1_g000002 Rmu_sc0015804.1_g000002 Rmu_sc0023779.1_g000001 Rmu_sc0024140.1_g000001 Rmu_sc0024833.1_g000006 Rmu_ssc0000087.1_g000013 Rmu_ssc0000400.1_g000088 Rmu_ssc0000400.1_g000089
rosa_roxburghii Rroxscaffold_175G00432540 Rroxscaffold_1G00003260 Rroxscaffold_1G00032490 Rroxscaffold_1G00035100 Rroxscaffold_1G00051960 Rroxscaffold_1G00056120 Rroxscaffold_2G00091260 Rroxscaffold_2G00097580 Rroxscaffold_2G00100910 Rroxscaffold_2G00101000 Rroxscaffold_2G00104370 Rroxscaffold_2G00154020 Rroxscaffold_3G00219010 Rroxscaffold_3G00241360 Rroxscaffold_3G00265190 Rroxscaffold_4G00328620 Rroxscaffold_5G00338660 Rroxscaffold_5G00339430 Rroxscaffold_5G00346490 Rroxscaffold_5G00360740 Rroxscaffold_5G00373490 Rroxscaffold_5G00373950 Rroxscaffold_5G00379290 Rroxscaffold_6G00390000 Rroxscaffold_6G00406560 Rroxscaffold_7G00163660 Rroxscaffold_7G00172220 Rroxscaffold_7G00182760 Rroxscaffold_7G00217680 Rroxscaffold_7G00217910
rosa_rugosa Rorug03G0299400 Rorug04G0048800 Rorug05G0503600 Rorug07G0090800 Rorug07G0090900 Rorug07G0294700
rosa_samantha Rh3BG243300 Rh4BG398100
rosa_wichuraiana Rw0G005950 Rw0G023070 Rw1G003680 Rw1G004130 Rw1G007910 Rw1G013940 Rw1G018710 Rw1G022140 Rw1G031170 Rw1G041420 Rw2G024950 Rw2G045000 Rw2G049360 Rw3G007370 Rw3G009120 Rw3G011780 Rw3G027830 Rw4G001510 Rw4G003110 Rw4G008370 Rw4G022100 Rw4G035490 Rw5G001650 Rw5G002000 Rw5G002590 Rw5G017930 Rw5G020530 Rw5G024010 Rw5G024710 Rw5G025620 Rw5G027980 Rw5G030200 Rw5G036530 Rw5G044700 Rw6G006860 Rw6G018940 Rw6G019810 Rw6G029740 Rw7G009360 Rw7G017280 Rw7G017540 Rw7G020090 Rw7G022500 Rw7G031420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 126, 544
AccI GTMKAC 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 297
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 2 cut(s) 42, 200
AcsI RAATTY 2 cut(s) 374, 468
AfaI GTAC 1 cut(s) 595
AfiI CCNNNNNNNGG 5 cut(s) 126, 198, 218, 442, 544
AgeI ACCGGT 1 cut(s) 180
AgsI TTSAA 6 cut(s) 74, 374, 419, 431, 473, 701
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 7 cut(s) 70, 284, 580, 709, 713, 778, 799
AluI AGCT 7 cut(s) 70, 284, 580, 709, 713, 778, 799
Alw21I GWGCWC 2 cut(s) 153, 801
AlwI GGATC 1 cut(s) 97
Aor13HI TCCGGA 1 cut(s) 297
AoxI GGCC 2 cut(s) 42, 200
ApeKI GCWGC 2 cut(s) 80, 568
ApoI RAATTY 2 cut(s) 374, 468
AsiGI ACCGGT 1 cut(s) 180
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 188
AsuNHI GCTAGC 1 cut(s) 709
AvaII GGWCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 801
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 2 cut(s) 153, 801
BbvI GCAGC 2 cut(s) 92, 580
BccI CCATC 1 cut(s) 21
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 443
BcnI CCSGG 1 cut(s) 316
BfaI CTAG 5 cut(s) 461, 581, 660, 710, 725
BfmI CTRYAG 2 cut(s) 78, 693
BfoI RGCGCY 1 cut(s) 169
BglII AGATCT 1 cut(s) 361
BisI GCNGC 2 cut(s) 81, 569
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 2 cut(s) 82, 570
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 2 cut(s) 316, 443
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 33, 392
BmrFI CCNGG 2 cut(s) 316, 443
BmsI GCATC 2 cut(s) 432, 653
BmtI GCTAGC 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 609
Bpu10I CCTNAGC 1 cut(s) 705
Bpu1102I GCTNAGC 1 cut(s) 774
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 316
BsaJI CCNNGG 2 cut(s) 106, 135
BsaWI WCCGGW 4 cut(s) 34, 180, 244, 297
Bsc4I CCNNNNNNNGG 5 cut(s) 126, 198, 218, 442, 544
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 398
BseAI TCCGGA 1 cut(s) 297
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 106, 135
BseLI CCNNNNNNNGG 5 cut(s) 126, 198, 218, 442, 544
BseMII CTCAG 3 cut(s) 166, 588, 696
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 5 cut(s) 102, 160, 175, 284, 578
BseXI GCAGC 2 cut(s) 92, 580
BseYI CCCAGC 2 cut(s) 143, 284
BshFI GGCC 2 cut(s) 44, 202
BshTI ACCGGT 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 153, 801
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 5 cut(s) 126, 198, 218, 442, 544
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 2 cut(s) 44, 202
Bsp1286I GDGCHC 2 cut(s) 153, 801
Bsp13I TCCGGA 1 cut(s) 297
Bsp143I GATC 2 cut(s) 102, 361
Bsp1720I GCTNAGC 1 cut(s) 774
BspANI GGCC 2 cut(s) 44, 202
BspCNI CTCAG 3 cut(s) 165, 589, 697
BspEI TCCGGA 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 33, 392
BspMAI CTGCAG 1 cut(s) 82
BspOI GCTAGC 1 cut(s) 713
BspPI GGATC 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 180
BsrI ACTGG 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 106, 135
BssMI GATC 2 cut(s) 102, 361
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 189, 389, 711
BstDEI CTNAG 5 cut(s) 152, 597, 648, 705, 774
BstDSI CCRYGG 1 cut(s) 106
BstEII GGTNACC 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 2 cut(s) 105, 364
BstMBI GATC 2 cut(s) 102, 361
BstMWI GCNNNNNNNGC 5 cut(s) 50, 208, 388, 577, 770
BstNI CCWGG 1 cut(s) 443
BstPI GGTNACC 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 314, 441
BstSFI CTRYAG 2 cut(s) 78, 693
BstV1I GCAGC 2 cut(s) 92, 580
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 2 cut(s) 44, 202
BtgI CCRYGG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 3 cut(s) 189, 389, 711
CfoI GCGC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 1 cut(s) 421
Csp6I GTAC 1 cut(s) 594
CspAI ACCGGT 1 cut(s) 180
CviAII CATG 2 cut(s) 544, 838
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 5 cut(s) 152, 597, 648, 705, 774
DpnI GATC 2 cut(s) 104, 363
DpnII GATC 2 cut(s) 102, 361
EaeI YGGCCR 2 cut(s) 42, 200
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 799
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 801
Eco47I GGWCC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 799
Eco91I GGTNACC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 799
EcoO65I GGTNACC 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 547, 841
FaqI GGGAC 1 cut(s) 45
FatI CATG 2 cut(s) 543, 837
FblI GTMKAC 1 cut(s) 410
Fnu4HI GCNGC 2 cut(s) 81, 569
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 2 cut(s) 81, 569
FspBI CTAG 5 cut(s) 461, 581, 660, 710, 725
GlaI GCGC 1 cut(s) 167
GluI GCNGC 2 cut(s) 81, 569
GsaI CCCAGC 2 cut(s) 147, 288
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 2 cut(s) 44, 202
HgaI GACGC 1 cut(s) 421
HhaI GCGC 1 cut(s) 168
Hin1II CATG 2 cut(s) 547, 841
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HincII GTYRAC 2 cut(s) 411, 739
HindII GTYRAC 2 cut(s) 411, 739
HindIII AAGCTT 2 cut(s) 68, 776
HinfI GANTC 6 cut(s) 48, 98, 206, 446, 457, 508
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 2 cut(s) 411, 739
Hpy188I TCNGA 5 cut(s) 117, 155, 221, 395, 676
Hpy188III TCNNGA 3 cut(s) 298, 357, 725
Hpy8I GTNNAC 2 cut(s) 411, 739
Hpy99I CGWCG 2 cut(s) 22, 415
HpyAV CCTTC 2 cut(s) 24, 313
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4V TGCA 3 cut(s) 80, 535, 666
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 208, 388, 577, 770
HpyF3I CTNAG 5 cut(s) 152, 597, 648, 705, 774
Hsp92II CATG 2 cut(s) 547, 841
HspAI GCGC 1 cut(s) 166
Kpn2I TCCGGA 1 cut(s) 297
Kzo9I GATC 2 cut(s) 102, 361
LmnI GCTCC 3 cut(s) 173, 396, 565
Lsp1109I GCAGC 2 cut(s) 92, 580
LweI GCATC 2 cut(s) 432, 653
MaeI CTAG 5 cut(s) 461, 581, 660, 710, 725
MaeIII GTNAC 3 cut(s) 176, 454, 655
MalI GATC 2 cut(s) 104, 363
MboI GATC 2 cut(s) 102, 361
MboII GAAGA 2 cut(s) 262, 614
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 153, 801
MluCI AATT 3 cut(s) 374, 468, 788
MlyI GAGTC 2 cut(s) 440, 451
MmeI TCCRAC 2 cut(s) 140, 418
MroI TCCGGA 1 cut(s) 297
MseI TTAA 1 cut(s) 791
MspR9I CCNGG 2 cut(s) 316, 443
MvaI CCWGG 1 cut(s) 443
MwoI GCNNNNNNNGC 5 cut(s) 50, 208, 388, 577, 770
NciI CCSGG 1 cut(s) 316
NdeII GATC 2 cut(s) 102, 361
NheI GCTAGC 1 cut(s) 709
NlaIII CATG 2 cut(s) 547, 841
NlaIV GGNNCC 2 cut(s) 33, 392
NmuCI GTSAC 3 cut(s) 176, 454, 655
PfeI GAWTC 4 cut(s) 48, 98, 206, 508
PflMI CCANNNNNTGG 2 cut(s) 126, 544
PfoI TCCNGGA 1 cut(s) 441
PinAI ACCGGT 1 cut(s) 180
PkrI GCNGC 2 cut(s) 82, 570
PleI GAGTC 2 cut(s) 440, 451
PpsI GAGTC 2 cut(s) 440, 451
Psp124BI GAGCTC 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 441
PspEI GGTNACC 1 cut(s) 176
PspFI CCCAGC 2 cut(s) 143, 284
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 2 cut(s) 33, 392
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
SacI GAGCTC 1 cut(s) 801
SalI GTCGAC 1 cut(s) 409
SaqAI TTAA 1 cut(s) 791
SatI GCNGC 2 cut(s) 81, 569
Sau3AI GATC 2 cut(s) 102, 361
Sau96I GGNCC 1 cut(s) 32
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 2 cut(s) 440, 451
ScrFI CCNGG 2 cut(s) 316, 443
SduI GDGCHC 2 cut(s) 153, 801
SfaNI GCATC 2 cut(s) 432, 653
SfcI CTRYAG 2 cut(s) 78, 693
SinI GGWCC 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 3 cut(s) 374, 468, 788
SspMI CTAG 5 cut(s) 461, 581, 660, 710, 725
SstI GAGCTC 1 cut(s) 801
StyD4I CCNGG 2 cut(s) 314, 441
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 682
TaqI TCGA 5 cut(s) 17, 61, 101, 240, 410
TasI AATT 3 cut(s) 374, 468, 788
TatI WGTACW 1 cut(s) 593
TfiI GAWTC 4 cut(s) 48, 98, 206, 508
Tru1I TTAA 1 cut(s) 791
Tru9I TTAA 1 cut(s) 791
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 3 cut(s) 176, 454, 655
TseI GCWGC 2 cut(s) 80, 568
Tsp45I GTSAC 3 cut(s) 176, 454, 655
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 405
Van91I CCANNNNNTGG 2 cut(s) 126, 544
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 2 cut(s) 374, 468
XbaI TCTAGA 1 cut(s) 724
XmiI GTMKAC 1 cut(s) 410
XspI CTAG 5 cut(s) 461, 581, 660, 710, 725
ZrmI AGTACT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.