gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 20 - 170 | 2.3e-21 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 619 |
| Acc65I | GGTACC | 1 cut(s) | 96 |
| AccB1I | GGYRCC | 2 cut(s) | 96, 740 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 13 |
| AcuI | CTGAAG | 4 cut(s) | 87, 255, 290, 596 |
| AfaI | GTAC | 2 cut(s) | 83, 98 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 13, 184 |
| AflII | CTTAAG | 1 cut(s) | 569 |
| AflIII | ACRYGT | 1 cut(s) | 367 |
| AgsI | TTSAA | 6 cut(s) | 32, 262, 471, 539, 640, 700 |
| AluBI | AGCT | 9 cut(s) | 49, 182, 200, 242, 268, 313, 568, 574, 704 |
| AluI | AGCT | 9 cut(s) | 49, 182, 200, 242, 268, 313, 568, 574, 704 |
| Alw21I | GWGCWC | 1 cut(s) | 137 |
| ApeKI | GCWGC | 2 cut(s) | 239, 626 |
| Asp718I | GGTACC | 1 cut(s) | 96 |
| AspS9I | GGNCC | 2 cut(s) | 16, 451 |
| AvaII | GGWCC | 2 cut(s) | 16, 451 |
| BanI | GGYRCC | 2 cut(s) | 96, 740 |
| BbsI | GAAGAC | 1 cut(s) | 587 |
| Bbv12I | GWGCWC | 1 cut(s) | 137 |
| BbvI | GCAGC | 2 cut(s) | 251, 613 |
| BccI | CCATC | 1 cut(s) | 343 |
| BfaI | CTAG | 3 cut(s) | 179, 243, 330 |
| BfmI | CTRYAG | 2 cut(s) | 406, 612 |
| BfrI | CTTAAG | 1 cut(s) | 569 |
| BfuAI | ACCTGC | 1 cut(s) | 619 |
| BisI | GCNGC | 2 cut(s) | 240, 627 |
| BlsI | GCNGC | 2 cut(s) | 241, 628 |
| BmcAI | AGTACT | 1 cut(s) | 83 |
| Bme18I | GGWCC | 2 cut(s) | 16, 451 |
| BmgT120I | GGNCC | 2 cut(s) | 16, 451 |
| BmiI | GGNNCC | 3 cut(s) | 98, 452, 742 |
| BoxI | GACNNNNGTC | 1 cut(s) | 21 |
| BpiI | GAAGAC | 1 cut(s) | 587 |
| BpuEI | CTTGAG | 1 cut(s) | 65 |
| BsaBI | GATNNNNATC | 1 cut(s) | 320 |
| BsaJI | CCNNGG | 1 cut(s) | 744 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 13, 184 |
| Bse8I | GATNNNNATC | 1 cut(s) | 320 |
| BseDI | CCNNGG | 1 cut(s) | 744 |
| BseGI | GGATG | 3 cut(s) | 354, 487, 714 |
| BseJI | GATNNNNATC | 1 cut(s) | 320 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 13, 184 |
| BseMII | CTCAG | 2 cut(s) | 429, 430 |
| BseXI | GCAGC | 2 cut(s) | 251, 613 |
| BsgI | GTGCAG | 1 cut(s) | 709 |
| BshNI | GGYRCC | 2 cut(s) | 96, 740 |
| BsiHKAI | GWGCWC | 1 cut(s) | 137 |
| BslFI | GGGAC | 2 cut(s) | 353, 464 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 13, 184 |
| BsmFI | GGGAC | 2 cut(s) | 353, 464 |
| Bsp1286I | GDGCHC | 1 cut(s) | 137 |
| Bsp143I | GATC | 1 cut(s) | 321 |
| BspCNI | CTCAG | 2 cut(s) | 429, 430 |
| BspLI | GGNNCC | 3 cut(s) | 98, 452, 742 |
| BspMAI | CTGCAG | 1 cut(s) | 616 |
| BspMI | ACCTGC | 1 cut(s) | 619 |
| BspT107I | GGYRCC | 2 cut(s) | 96, 740 |
| BspTI | CTTAAG | 1 cut(s) | 569 |
| BssECI | CCNNGG | 1 cut(s) | 744 |
| BssMI | GATC | 1 cut(s) | 321 |
| BssT1I | CCWWGG | 1 cut(s) | 744 |
| Bst4CI | ACNGT | 2 cut(s) | 151, 387 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 480 |
| BstAFI | CTTAAG | 1 cut(s) | 569 |
| BstDEI | CTNAG | 4 cut(s) | 117, 252, 416, 438 |
| BstF5I | GGATG | 3 cut(s) | 354, 487, 714 |
| BstKTI | GATC | 1 cut(s) | 324 |
| BstMBI | GATC | 1 cut(s) | 321 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 46, 239 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 21 |
| BstSFI | CTRYAG | 2 cut(s) | 406, 612 |
| BstV1I | GCAGC | 2 cut(s) | 251, 613 |
| BstV2I | GAAGAC | 1 cut(s) | 587 |
| BtsCI | GGATG | 3 cut(s) | 354, 487, 714 |
| BtsI | GCAGTG | 2 cut(s) | 531, 697 |
| BtsIMutI | CAGTG | 5 cut(s) | 63, 147, 383, 531, 697 |
| BveI | ACCTGC | 1 cut(s) | 619 |
| Cfr13I | GGNCC | 2 cut(s) | 16, 451 |
| Csp6I | GTAC | 2 cut(s) | 82, 97 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 459, 494 |
| CviAII | CATG | 3 cut(s) | 343, 377, 676 |
| CviQI | GTAC | 2 cut(s) | 82, 97 |
| DdeI | CTNAG | 4 cut(s) | 117, 252, 416, 438 |
| DpnI | GATC | 1 cut(s) | 323 |
| DpnII | GATC | 1 cut(s) | 321 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 480 |
| EarI | CTCTTC | 2 cut(s) | 63, 480 |
| Eco130I | CCWWGG | 1 cut(s) | 744 |
| Eco47I | GGWCC | 2 cut(s) | 16, 451 |
| Eco57I | CTGAAG | 4 cut(s) | 87, 255, 290, 596 |
| EcoO109I | RGGNCCY | 1 cut(s) | 451 |
| EcoT14I | CCWWGG | 1 cut(s) | 744 |
| ErhI | CCWWGG | 1 cut(s) | 744 |
| FaeI | CATG | 3 cut(s) | 346, 380, 679 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 638, 670 |
| FaqI | GGGAC | 2 cut(s) | 353, 464 |
| FatI | CATG | 3 cut(s) | 342, 376, 675 |
| Fnu4HI | GCNGC | 2 cut(s) | 240, 627 |
| FokI | GGATG | 3 cut(s) | 361, 494, 721 |
| Fsp4HI | GCNGC | 2 cut(s) | 240, 627 |
| FspBI | CTAG | 3 cut(s) | 179, 243, 330 |
| GluI | GCNGC | 2 cut(s) | 240, 627 |
| Hin1II | CATG | 3 cut(s) | 346, 380, 679 |
| HindIII | AAGCTT | 2 cut(s) | 566, 702 |
| HinfI | GANTC | 2 cut(s) | 440, 617 |
| Hpy166II | GTNNAC | 1 cut(s) | 529 |
| Hpy188I | TCNGA | 2 cut(s) | 27, 419 |
| Hpy188III | TCNNGA | 2 cut(s) | 279, 603 |
| Hpy8I | GTNNAC | 1 cut(s) | 529 |
| HpyAV | CCTTC | 4 cut(s) | 106, 496, 658, 712 |
| HpyCH4III | ACNGT | 2 cut(s) | 151, 387 |
| HpyCH4IV | ACGT | 1 cut(s) | 369 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 105, 434, 614, 629, 660, 690 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 46, 239 |
| HpyF3I | CTNAG | 4 cut(s) | 117, 252, 416, 438 |
| HpySE526I | ACGT | 1 cut(s) | 369 |
| Hsp92II | CATG | 3 cut(s) | 346, 380, 679 |
| KpnI | GGTACC | 1 cut(s) | 100 |
| Kzo9I | GATC | 1 cut(s) | 321 |
| LmnI | GCTCC | 2 cut(s) | 132, 310 |
| LpnPI | CCDG | 8 cut(s) | 35, 94, 186, 202, 264, 588, 624, 719 |
| Lsp1109I | GCAGC | 2 cut(s) | 251, 613 |
| MaeI | CTAG | 3 cut(s) | 179, 243, 330 |
| MaeII | ACGT | 1 cut(s) | 369 |
| MaeIII | GTNAC | 3 cut(s) | 401, 410, 650 |
| MalI | GATC | 1 cut(s) | 323 |
| MboI | GATC | 1 cut(s) | 321 |
| MboII | GAAGA | 7 cut(s) | 44, 80, 497, 565, 589, 592, 691 |
| MhlI | GDGCHC | 1 cut(s) | 137 |
| MluCI | AATT | 2 cut(s) | 126, 471 |
| MlyI | GAGTC | 2 cut(s) | 449, 611 |
| MmeI | TCCRAC | 2 cut(s) | 168, 649 |
| MnlI | CCTC | 9 cut(s) | 64, 149, 249, 330, 425, 433, 464, 481, 730 |
| MseI | TTAA | 6 cut(s) | 357, 498, 570, 645, 714, 726 |
| MslI | CAYNNNNRTG | 1 cut(s) | 347 |
| MspCI | CTTAAG | 1 cut(s) | 569 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 46, 239 |
| NdeII | GATC | 1 cut(s) | 321 |
| NlaIII | CATG | 3 cut(s) | 346, 380, 679 |
| NlaIV | GGNNCC | 3 cut(s) | 98, 452, 742 |
| NmuCI | GTSAC | 1 cut(s) | 401 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 13 |
| PkrI | GCNGC | 2 cut(s) | 241, 628 |
| PleI | GAGTC | 2 cut(s) | 448, 611 |
| PpsI | GAGTC | 2 cut(s) | 448, 611 |
| PpuMI | RGGWCCY | 1 cut(s) | 451 |
| PshAI | GACNNNNGTC | 1 cut(s) | 21 |
| Psp5II | RGGWCCY | 1 cut(s) | 451 |
| PspN4I | GGNNCC | 3 cut(s) | 98, 452, 742 |
| PspPI | GGNCC | 2 cut(s) | 16, 451 |
| PspPPI | RGGWCCY | 1 cut(s) | 451 |
| PstI | CTGCAG | 1 cut(s) | 616 |
| RsaI | GTAC | 2 cut(s) | 83, 98 |
| RsaNI | GTAC | 2 cut(s) | 82, 97 |
| RseI | CAYNNNNRTG | 1 cut(s) | 347 |
| SaqAI | TTAA | 6 cut(s) | 357, 498, 570, 645, 714, 726 |
| SatI | GCNGC | 2 cut(s) | 240, 627 |
| Sau3AI | GATC | 1 cut(s) | 321 |
| Sau96I | GGNCC | 2 cut(s) | 16, 451 |
| ScaI | AGTACT | 1 cut(s) | 83 |
| SchI | GAGTC | 2 cut(s) | 449, 611 |
| SduI | GDGCHC | 1 cut(s) | 137 |
| SfcI | CTRYAG | 2 cut(s) | 406, 612 |
| SinI | GGWCC | 2 cut(s) | 16, 451 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 347 |
| SmlI | CTYRAG | 2 cut(s) | 44, 569 |
| SmoI | CTYRAG | 2 cut(s) | 44, 569 |
| Sse9I | AATT | 2 cut(s) | 126, 471 |
| SspMI | CTAG | 3 cut(s) | 179, 243, 330 |
| StyI | CCWWGG | 1 cut(s) | 744 |
| TaaI | ACNGT | 2 cut(s) | 151, 387 |
| TaiI | ACGT | 1 cut(s) | 372 |
| TasI | AATT | 2 cut(s) | 126, 471 |
| TatI | WGTACW | 1 cut(s) | 81 |
| Tru1I | TTAA | 6 cut(s) | 357, 498, 570, 645, 714, 726 |
| Tru9I | TTAA | 6 cut(s) | 357, 498, 570, 645, 714, 726 |
| TscAI | CASTG | 5 cut(s) | 70, 154, 390, 531, 697 |
| TseFI | GTSAC | 1 cut(s) | 401 |
| TseI | GCWGC | 2 cut(s) | 239, 626 |
| Tsp45I | GTSAC | 1 cut(s) | 401 |
| TspDTI | ATGAA | 4 cut(s) | 365, 378, 498, 692 |
| TspRI | CASTG | 5 cut(s) | 70, 154, 390, 531, 697 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 13 |
| Vha464I | CTTAAG | 1 cut(s) | 569 |
| VpaK11BI | GGWCC | 2 cut(s) | 16, 451 |
| XspI | CTAG | 3 cut(s) | 179, 243, 330 |
| ZrmI | AGTACT | 1 cut(s) | 83 |