gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 42 - 190 | 5.1e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 84 |
| AcoI | YGGCCR | 1 cut(s) | 246 |
| AcsI | RAATTY | 1 cut(s) | 77 |
| AcuI | CTGAAG | 1 cut(s) | 141 |
| AfaI | GTAC | 2 cut(s) | 130, 257 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 271 |
| AgsI | TTSAA | 3 cut(s) | 56, 77, 82 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 423, 455 |
| AluBI | AGCT | 3 cut(s) | 425, 449, 492 |
| AluI | AGCT | 3 cut(s) | 425, 449, 492 |
| Alw26I | GTCTC | 2 cut(s) | 140, 296 |
| AoxI | GGCC | 2 cut(s) | 246, 261 |
| ApeKI | GCWGC | 2 cut(s) | 134, 543 |
| ApoI | RAATTY | 1 cut(s) | 77 |
| AspS9I | GGNCC | 1 cut(s) | 262 |
| AsuHPI | GGTGA | 1 cut(s) | 499 |
| BalI | TGGCCA | 1 cut(s) | 248 |
| BbvI | GCAGC | 2 cut(s) | 121, 530 |
| BccI | CCATC | 2 cut(s) | 338, 545 |
| BceAI | ACGGC | 1 cut(s) | 37 |
| BcoDI | GTCTC | 2 cut(s) | 140, 296 |
| BfmI | CTRYAG | 1 cut(s) | 135 |
| BisI | GCNGC | 2 cut(s) | 135, 544 |
| BlpI | GCTNAGC | 1 cut(s) | 336 |
| BlsI | GCNGC | 2 cut(s) | 136, 545 |
| BmcAI | AGTACT | 1 cut(s) | 130 |
| BmgT120I | GGNCC | 1 cut(s) | 262 |
| BmsI | GCATC | 2 cut(s) | 60, 70 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 336 |
| BsaBI | GATNNNNATC | 1 cut(s) | 536 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 271 |
| Bse1I | ACTGG | 1 cut(s) | 310 |
| Bse3DI | GCAATG | 3 cut(s) | 210, 414, 414 |
| Bse8I | GATNNNNATC | 1 cut(s) | 536 |
| BseGI | GGATG | 1 cut(s) | 75 |
| BseJI | GATNNNNATC | 1 cut(s) | 536 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BseMI | GCAATG | 3 cut(s) | 210, 414, 414 |
| BseMII | CTCAG | 2 cut(s) | 291, 515 |
| BseNI | ACTGG | 1 cut(s) | 310 |
| BseRI | GAGGAG | 1 cut(s) | 224 |
| BseXI | GCAGC | 2 cut(s) | 121, 530 |
| BseYI | CCCAGC | 1 cut(s) | 96 |
| BshFI | GGCC | 2 cut(s) | 248, 263 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BsmAI | GTCTC | 2 cut(s) | 140, 296 |
| BsmI | GAATGC | 1 cut(s) | 409 |
| BsnI | GGCC | 2 cut(s) | 248, 263 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 336 |
| BspANI | GGCC | 2 cut(s) | 248, 263 |
| BspCNI | CTCAG | 2 cut(s) | 292, 514 |
| BspMAI | CTGCAG | 1 cut(s) | 139 |
| BsrDI | GCAATG | 3 cut(s) | 210, 414, 414 |
| BsrI | ACTGG | 1 cut(s) | 310 |
| Bst4CI | ACNGT | 1 cut(s) | 186 |
| BstDEI | CTNAG | 3 cut(s) | 300, 336, 501 |
| BstF5I | GGATG | 1 cut(s) | 75 |
| BstMAI | GTCTC | 2 cut(s) | 140, 296 |
| BstSFI | CTRYAG | 1 cut(s) | 135 |
| BstV1I | GCAGC | 2 cut(s) | 121, 530 |
| BsuRI | GGCC | 2 cut(s) | 248, 263 |
| BtsCI | GGATG | 1 cut(s) | 75 |
| BtsI | GCAGTG | 1 cut(s) | 458 |
| BtsIMutI | CAGTG | 3 cut(s) | 182, 458, 522 |
| Cfr13I | GGNCC | 1 cut(s) | 262 |
| Csp6I | GTAC | 2 cut(s) | 129, 256 |
| CviAII | CATG | 4 cut(s) | 193, 259, 341, 513 |
| CviJI | RGCY | 9 cut(s) | 100, 113, 170, 248, 263, 299, 425, 449, 492 |
| CviKI_1 | RGCY | 9 cut(s) | 100, 113, 170, 248, 263, 299, 425, 449, 492 |
| CviQI | GTAC | 2 cut(s) | 129, 256 |
| DdeI | CTNAG | 3 cut(s) | 300, 336, 501 |
| DraI | TTTAAA | 1 cut(s) | 283 |
| EaeI | YGGCCR | 1 cut(s) | 246 |
| Eco57I | CTGAAG | 1 cut(s) | 141 |
| EcoRI | GAATTC | 1 cut(s) | 77 |
| EcoT22I | ATGCAT | 1 cut(s) | 63 |
| FaeI | CATG | 4 cut(s) | 196, 262, 344, 516 |
| FaiI | YATR | 8 cut(s) | 194, 216, 260, 342, 422, 474, 495, 514 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 227, 259 |
| FatI | CATG | 4 cut(s) | 192, 258, 340, 512 |
| Fnu4HI | GCNGC | 2 cut(s) | 135, 544 |
| FokI | GGATG | 1 cut(s) | 82 |
| Fsp4HI | GCNGC | 2 cut(s) | 135, 544 |
| GluI | GCNGC | 2 cut(s) | 135, 544 |
| GsaI | CCCAGC | 1 cut(s) | 100 |
| HaeIII | GGCC | 2 cut(s) | 248, 263 |
| Hin1II | CATG | 4 cut(s) | 196, 262, 344, 516 |
| HincII | GTYRAC | 1 cut(s) | 385 |
| HindII | GTYRAC | 1 cut(s) | 385 |
| HphI | GGTGA | 1 cut(s) | 499 |
| Hpy166II | GTNNAC | 1 cut(s) | 385 |
| Hpy188I | TCNGA | 3 cut(s) | 292, 322, 504 |
| Hpy8I | GTNNAC | 1 cut(s) | 385 |
| HpyAV | CCTTC | 1 cut(s) | 499 |
| HpyCH4III | ACNGT | 1 cut(s) | 186 |
| HpyCH4IV | ACGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 5 cut(s) | 61, 137, 196, 203, 407 |
| HpyF3I | CTNAG | 3 cut(s) | 300, 336, 501 |
| HpySE526I | ACGT | 1 cut(s) | 84 |
| Hsp92II | CATG | 4 cut(s) | 196, 262, 344, 516 |
| LmnI | GCTCC | 1 cut(s) | 211 |
| LpnPI | CCDG | 4 cut(s) | 50, 110, 278, 291 |
| Lsp1109I | GCAGC | 2 cut(s) | 121, 530 |
| LweI | GCATC | 2 cut(s) | 60, 70 |
| MaeII | ACGT | 1 cut(s) | 84 |
| MaeIII | GTNAC | 2 cut(s) | 180, 239 |
| MboII | GAAGA | 3 cut(s) | 134, 563, 566 |
| MlsI | TGGCCA | 1 cut(s) | 248 |
| MluCI | AATT | 4 cut(s) | 51, 77, 431, 480 |
| MluNI | TGGCCA | 1 cut(s) | 248 |
| MnlI | CCTC | 4 cut(s) | 111, 202, 265, 398 |
| Mox20I | TGGCCA | 1 cut(s) | 248 |
| Mph1103I | ATGCAT | 1 cut(s) | 63 |
| MscI | TGGCCA | 1 cut(s) | 248 |
| MseI | TTAA | 6 cut(s) | 18, 33, 188, 282, 326, 483 |
| Msp20I | TGGCCA | 1 cut(s) | 248 |
| Mva1269I | GAATGC | 1 cut(s) | 409 |
| NlaIII | CATG | 4 cut(s) | 196, 262, 344, 516 |
| NmuCI | GTSAC | 2 cut(s) | 180, 239 |
| NsiI | ATGCAT | 1 cut(s) | 63 |
| PctI | GAATGC | 1 cut(s) | 409 |
| PkrI | GCNGC | 2 cut(s) | 136, 545 |
| Psp1406I | AACGTT | 1 cut(s) | 84 |
| PspFI | CCCAGC | 1 cut(s) | 96 |
| PspPI | GGNCC | 1 cut(s) | 262 |
| PstI | CTGCAG | 1 cut(s) | 139 |
| RsaI | GTAC | 2 cut(s) | 130, 257 |
| RsaNI | GTAC | 2 cut(s) | 129, 256 |
| SaqAI | TTAA | 6 cut(s) | 18, 33, 188, 282, 326, 483 |
| SatI | GCNGC | 2 cut(s) | 135, 544 |
| Sau96I | GGNCC | 1 cut(s) | 262 |
| ScaI | AGTACT | 1 cut(s) | 130 |
| SetI | ASST | 7 cut(s) | 87, 290, 390, 427, 451, 489, 494 |
| SfaNI | GCATC | 2 cut(s) | 60, 70 |
| SfcI | CTRYAG | 1 cut(s) | 135 |
| Sse9I | AATT | 4 cut(s) | 51, 77, 431, 480 |
| TaaI | ACNGT | 1 cut(s) | 186 |
| TaiI | ACGT | 1 cut(s) | 87 |
| TasI | AATT | 4 cut(s) | 51, 77, 431, 480 |
| TatI | WGTACW | 1 cut(s) | 128 |
| Tru1I | TTAA | 6 cut(s) | 18, 33, 188, 282, 326, 483 |
| Tru9I | TTAA | 6 cut(s) | 18, 33, 188, 282, 326, 483 |
| TscAI | CASTG | 3 cut(s) | 189, 465, 529 |
| TseFI | GTSAC | 2 cut(s) | 180, 239 |
| TseI | GCWGC | 2 cut(s) | 134, 543 |
| Tsp45I | GTSAC | 2 cut(s) | 180, 239 |
| TspDTI | ATGAA | 2 cut(s) | 17, 431 |
| TspRI | CASTG | 3 cut(s) | 189, 465, 529 |
| XapI | RAATTY | 1 cut(s) | 77 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 256 |
| ZrmI | AGTACT | 1 cut(s) | 130 |
| Zsp2I | ATGCAT | 1 cut(s) | 63 |