gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 51 - 192 | 1.2e-12 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 848 |
| AciI | CCGC | 1 cut(s) | 687 |
| AclWI | GGATC | 1 cut(s) | 466 |
| AcoI | YGGCCR | 1 cut(s) | 198 |
| AcsI | RAATTY | 3 cut(s) | 49, 555, 667 |
| AcuI | CTGAAG | 2 cut(s) | 314, 521 |
| AcyI | GRCGYC | 1 cut(s) | 723 |
| AfaI | GTAC | 1 cut(s) | 799 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 41, 491, 719 |
| AgsI | TTSAA | 2 cut(s) | 136, 541 |
| AhlI | ACTAGT | 1 cut(s) | 143 |
| AjnI | CCWGG | 1 cut(s) | 742 |
| AluBI | AGCT | 5 cut(s) | 79, 343, 547, 577, 647 |
| AluI | AGCT | 5 cut(s) | 79, 343, 547, 577, 647 |
| AlwI | GGATC | 1 cut(s) | 466 |
| AoxI | GGCC | 5 cut(s) | 88, 198, 289, 465, 493 |
| ApeKI | GCWGC | 1 cut(s) | 662 |
| ApoI | RAATTY | 3 cut(s) | 49, 555, 667 |
| AspS9I | GGNCC | 3 cut(s) | 466, 494, 710 |
| AsuHPI | GGTGA | 5 cut(s) | 219, 247, 434, 686, 832 |
| AvaII | GGWCC | 1 cut(s) | 710 |
| AxyI | CCTNAGG | 1 cut(s) | 150 |
| BaeGI | GKGCMC | 3 cut(s) | 683, 783, 851 |
| BalI | TGGCCA | 1 cut(s) | 200 |
| BanI | GGYRCC | 1 cut(s) | 848 |
| BbsI | GAAGAC | 2 cut(s) | 470, 509 |
| BbvI | GCAGC | 1 cut(s) | 649 |
| BceAI | ACGGC | 1 cut(s) | 279 |
| BciT130I | CCWGG | 1 cut(s) | 744 |
| BcuI | ACTAGT | 1 cut(s) | 143 |
| BfaI | CTAG | 5 cut(s) | 144, 335, 414, 486, 657 |
| BfmI | CTRYAG | 1 cut(s) | 648 |
| BisI | GCNGC | 1 cut(s) | 663 |
| BlsI | GCNGC | 1 cut(s) | 664 |
| Bme1390I | CCNGG | 1 cut(s) | 744 |
| Bme18I | GGWCC | 1 cut(s) | 710 |
| BmgT120I | GGNCC | 3 cut(s) | 466, 494, 710 |
| BmiI | GGNNCC | 2 cut(s) | 120, 850 |
| BmrFI | CCNGG | 1 cut(s) | 744 |
| BmsI | GCATC | 1 cut(s) | 436 |
| BpiI | GAAGAC | 2 cut(s) | 470, 509 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 106, 138 |
| BsaHI | GRCGYC | 1 cut(s) | 723 |
| BsaJI | CCNNGG | 4 cut(s) | 94, 589, 743, 852 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 41, 491, 719 |
| Bse21I | CCTNAGG | 1 cut(s) | 150 |
| BseBI | CCWGG | 1 cut(s) | 744 |
| BseDI | CCNNGG | 4 cut(s) | 94, 589, 743, 852 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 41, 491, 719 |
| BseMII | CTCAG | 2 cut(s) | 141, 381 |
| BseSI | GKGCMC | 3 cut(s) | 683, 783, 851 |
| BseXI | GCAGC | 1 cut(s) | 649 |
| BsgI | GTGCAG | 1 cut(s) | 584 |
| BshFI | GGCC | 5 cut(s) | 90, 200, 291, 467, 495 |
| BshNI | GGYRCC | 1 cut(s) | 848 |
| BslFI | GGGAC | 4 cut(s) | 548, 607, 703, 760 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 41, 491, 719 |
| BsmFI | GGGAC | 4 cut(s) | 548, 607, 703, 760 |
| BsmI | GAATGC | 1 cut(s) | 437 |
| BsnI | GGCC | 5 cut(s) | 90, 200, 291, 467, 495 |
| Bsp1286I | GDGCHC | 3 cut(s) | 683, 783, 851 |
| Bsp143I | GATC | 2 cut(s) | 337, 471 |
| Bsp19I | CCATGG | 1 cut(s) | 589 |
| BspACI | CCGC | 1 cut(s) | 687 |
| BspANI | GGCC | 5 cut(s) | 90, 200, 291, 467, 495 |
| BspCNI | CTCAG | 2 cut(s) | 142, 380 |
| BspLI | GGNNCC | 2 cut(s) | 120, 850 |
| BspPI | GGATC | 1 cut(s) | 466 |
| BspQI | GCTCTTC | 1 cut(s) | 567 |
| BspT107I | GGYRCC | 1 cut(s) | 848 |
| BssECI | CCNNGG | 4 cut(s) | 94, 589, 743, 852 |
| BssMI | GATC | 2 cut(s) | 337, 471 |
| BssNI | GRCGYC | 1 cut(s) | 723 |
| BssT1I | CCWWGG | 3 cut(s) | 94, 589, 852 |
| Bst2UI | CCWGG | 1 cut(s) | 744 |
| Bst4CI | ACNGT | 1 cut(s) | 598 |
| Bst6I | CTCTTC | 1 cut(s) | 567 |
| BstACI | GRCGYC | 1 cut(s) | 723 |
| BstDEI | CTNAG | 4 cut(s) | 150, 367, 693, 714 |
| BstDSI | CCRYGG | 1 cut(s) | 589 |
| BstKTI | GATC | 2 cut(s) | 340, 474 |
| BstMBI | GATC | 2 cut(s) | 337, 471 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 76, 659 |
| BstNI | CCWGG | 1 cut(s) | 744 |
| BstSCI | CCNGG | 1 cut(s) | 742 |
| BstSFI | CTRYAG | 1 cut(s) | 648 |
| BstSLI | GKGCMC | 3 cut(s) | 683, 783, 851 |
| BstV1I | GCAGC | 1 cut(s) | 649 |
| BstV2I | GAAGAC | 2 cut(s) | 470, 509 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 196 |
| Bsu36I | CCTNAGG | 1 cut(s) | 150 |
| BsuRI | GGCC | 5 cut(s) | 90, 200, 291, 467, 495 |
| BtgI | CCRYGG | 1 cut(s) | 589 |
| BtsIMutI | CAGTG | 1 cut(s) | 497 |
| Cfr13I | GGNCC | 3 cut(s) | 466, 494, 710 |
| CseI | GACGC | 2 cut(s) | 642, 712 |
| Csp6I | GTAC | 1 cut(s) | 798 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 400, 435 |
| CviAII | CATG | 5 cut(s) | 9, 60, 223, 352, 590 |
| CviQI | GTAC | 1 cut(s) | 798 |
| DdeI | CTNAG | 4 cut(s) | 150, 367, 693, 714 |
| DpnI | GATC | 2 cut(s) | 339, 473 |
| DpnII | GATC | 2 cut(s) | 337, 471 |
| DraI | TTTAAA | 2 cut(s) | 55, 808 |
| EaeI | YGGCCR | 1 cut(s) | 198 |
| Eam1104I | CTCTTC | 1 cut(s) | 567 |
| EarI | CTCTTC | 1 cut(s) | 567 |
| Eco130I | CCWWGG | 3 cut(s) | 94, 589, 852 |
| Eco47I | GGWCC | 1 cut(s) | 710 |
| Eco57I | CTGAAG | 2 cut(s) | 314, 521 |
| Eco81I | CCTNAGG | 1 cut(s) | 150 |
| EcoRII | CCWGG | 1 cut(s) | 742 |
| EcoT14I | CCWWGG | 3 cut(s) | 94, 589, 852 |
| ErhI | CCWWGG | 3 cut(s) | 94, 589, 852 |
| FaeI | CATG | 5 cut(s) | 12, 63, 226, 355, 593 |
| FaqI | GGGAC | 4 cut(s) | 548, 607, 703, 760 |
| FatI | CATG | 5 cut(s) | 8, 59, 222, 351, 589 |
| FauI | CCCGC | 1 cut(s) | 680 |
| Fnu4HI | GCNGC | 1 cut(s) | 663 |
| Fsp4HI | GCNGC | 1 cut(s) | 663 |
| FspBI | CTAG | 5 cut(s) | 144, 335, 414, 486, 657 |
| GluI | GCNGC | 1 cut(s) | 663 |
| HaeIII | GGCC | 5 cut(s) | 90, 200, 291, 467, 495 |
| HgaI | GACGC | 2 cut(s) | 642, 712 |
| Hin1I | GRCGYC | 1 cut(s) | 723 |
| Hin1II | CATG | 5 cut(s) | 12, 63, 226, 355, 593 |
| HincII | GTYRAC | 1 cut(s) | 616 |
| HindII | GTYRAC | 1 cut(s) | 616 |
| HinfI | GANTC | 1 cut(s) | 607 |
| HpaI | GTTAAC | 1 cut(s) | 616 |
| HphI | GGTGA | 5 cut(s) | 219, 247, 434, 686, 832 |
| Hpy166II | GTNNAC | 2 cut(s) | 460, 616 |
| Hpy188I | TCNGA | 2 cut(s) | 370, 445 |
| Hpy188III | TCNNGA | 1 cut(s) | 149 |
| Hpy8I | GTNNAC | 2 cut(s) | 460, 616 |
| HpyAV | CCTTC | 6 cut(s) | 460, 517, 625, 712, 766, 770 |
| HpyCH4III | ACNGT | 1 cut(s) | 598 |
| HpyCH4V | TGCA | 6 cut(s) | 22, 437, 509, 565, 665, 768 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 76, 659 |
| HpyF3I | CTNAG | 4 cut(s) | 150, 367, 693, 714 |
| Hsp92I | GRCGYC | 1 cut(s) | 723 |
| Hsp92II | CATG | 5 cut(s) | 12, 63, 226, 355, 593 |
| KspAI | GTTAAC | 1 cut(s) | 616 |
| Kzo9I | GATC | 2 cut(s) | 337, 471 |
| LguI | GCTCTTC | 1 cut(s) | 567 |
| LmnI | GCTCC | 2 cut(s) | 118, 382 |
| Lsp1109I | GCAGC | 1 cut(s) | 649 |
| LweI | GCATC | 1 cut(s) | 436 |
| MaeI | CTAG | 5 cut(s) | 144, 335, 414, 486, 657 |
| MaeIII | GTNAC | 1 cut(s) | 225 |
| MalI | GATC | 2 cut(s) | 339, 473 |
| MboI | GATC | 2 cut(s) | 337, 471 |
| MboII | GAAGA | 4 cut(s) | 470, 514, 581, 584 |
| MhlI | GDGCHC | 3 cut(s) | 683, 783, 851 |
| MlsI | TGGCCA | 1 cut(s) | 200 |
| MluCI | AATT | 9 cut(s) | 49, 159, 207, 396, 425, 555, 579, 667, 793 |
| MluNI | TGGCCA | 1 cut(s) | 200 |
| Mox20I | TGGCCA | 1 cut(s) | 200 |
| MscI | TGGCCA | 1 cut(s) | 200 |
| MseI | TTAA | 8 cut(s) | 39, 54, 300, 582, 615, 753, 786, 807 |
| MslI | CAYNNNNRTG | 1 cut(s) | 754 |
| Msp20I | TGGCCA | 1 cut(s) | 200 |
| MspR9I | CCNGG | 1 cut(s) | 744 |
| Mva1269I | GAATGC | 1 cut(s) | 437 |
| MvaI | CCWGG | 1 cut(s) | 744 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 76, 659 |
| NcoI | CCATGG | 1 cut(s) | 589 |
| NdeII | GATC | 2 cut(s) | 337, 471 |
| NlaIII | CATG | 5 cut(s) | 12, 63, 226, 355, 593 |
| NlaIV | GGNNCC | 2 cut(s) | 120, 850 |
| NmuCI | GTSAC | 1 cut(s) | 225 |
| PciSI | GCTCTTC | 1 cut(s) | 567 |
| PctI | GAATGC | 1 cut(s) | 437 |
| PfeI | GAWTC | 1 cut(s) | 607 |
| PflFI | GACNNNGTC | 1 cut(s) | 598 |
| PkrI | GCNGC | 1 cut(s) | 664 |
| Psp6I | CCWGG | 1 cut(s) | 742 |
| PspGI | CCWGG | 1 cut(s) | 742 |
| PspN4I | GGNNCC | 2 cut(s) | 120, 850 |
| PspPI | GGNCC | 3 cut(s) | 466, 494, 710 |
| PsyI | GACNNNGTC | 1 cut(s) | 598 |
| RsaI | GTAC | 1 cut(s) | 799 |
| RsaNI | GTAC | 1 cut(s) | 798 |
| RseI | CAYNNNNRTG | 1 cut(s) | 754 |
| SapI | GCTCTTC | 1 cut(s) | 567 |
| SaqAI | TTAA | 8 cut(s) | 39, 54, 300, 582, 615, 753, 786, 807 |
| SatI | GCNGC | 1 cut(s) | 663 |
| Sau3AI | GATC | 2 cut(s) | 337, 471 |
| Sau96I | GGNCC | 3 cut(s) | 466, 494, 710 |
| ScrFI | CCNGG | 1 cut(s) | 744 |
| SduI | GDGCHC | 3 cut(s) | 683, 783, 851 |
| SfaNI | GCATC | 1 cut(s) | 436 |
| SfcI | CTRYAG | 1 cut(s) | 648 |
| SinI | GGWCC | 1 cut(s) | 710 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 754 |
| SpeI | ACTAGT | 1 cut(s) | 143 |
| Sse9I | AATT | 9 cut(s) | 49, 159, 207, 396, 425, 555, 579, 667, 793 |
| SsiI | CCGC | 1 cut(s) | 687 |
| SspMI | CTAG | 5 cut(s) | 144, 335, 414, 486, 657 |
| StyD4I | CCNGG | 1 cut(s) | 742 |
| StyI | CCWWGG | 3 cut(s) | 94, 589, 852 |
| TaaI | ACNGT | 1 cut(s) | 598 |
| TasI | AATT | 9 cut(s) | 49, 159, 207, 396, 425, 555, 579, 667, 793 |
| TfiI | GAWTC | 1 cut(s) | 607 |
| Tru1I | TTAA | 8 cut(s) | 39, 54, 300, 582, 615, 753, 786, 807 |
| Tru9I | TTAA | 8 cut(s) | 39, 54, 300, 582, 615, 753, 786, 807 |
| TscAI | CASTG | 1 cut(s) | 504 |
| TseFI | GTSAC | 1 cut(s) | 225 |
| TseI | GCWGC | 1 cut(s) | 662 |
| Tsp45I | GTSAC | 1 cut(s) | 225 |
| TspDTI | ATGAA | 6 cut(s) | 17, 227, 368, 407, 442, 824 |
| TspGWI | ACGGA | 1 cut(s) | 464 |
| TspRI | CASTG | 1 cut(s) | 504 |
| Tth111I | GACNNNGTC | 1 cut(s) | 598 |
| VpaK11BI | GGWCC | 1 cut(s) | 710 |
| XapI | RAATTY | 3 cut(s) | 49, 555, 667 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 229 |
| XspI | CTAG | 5 cut(s) | 144, 335, 414, 486, 657 |