gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 104 |
| AcsI | RAATTY | 1 cut(s) | 260 |
| AfaI | GTAC | 3 cut(s) | 142, 173, 290 |
| AluBI | AGCT | 1 cut(s) | 308 |
| AluI | AGCT | 1 cut(s) | 308 |
| Alw26I | GTCTC | 1 cut(s) | 305 |
| AlwI | GGATC | 1 cut(s) | 104 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 248 |
| ApoI | RAATTY | 1 cut(s) | 260 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 332 |
| BbsI | GAAGAC | 1 cut(s) | 325 |
| BccI | CCATC | 1 cut(s) | 181 |
| BcoDI | GTCTC | 1 cut(s) | 305 |
| BfaI | CTAG | 1 cut(s) | 74 |
| BmcAI | AGTACT | 1 cut(s) | 290 |
| BmsI | GCATC | 2 cut(s) | 31, 246 |
| BpiI | GAAGAC | 1 cut(s) | 325 |
| BsaBI | GATNNNNATC | 2 cut(s) | 90, 200 |
| Bse1I | ACTGG | 2 cut(s) | 173, 319 |
| Bse8I | GATNNNNATC | 2 cut(s) | 90, 200 |
| BseGI | GGATG | 2 cut(s) | 219, 237 |
| BseJI | GATNNNNATC | 2 cut(s) | 90, 200 |
| BseMII | CTCAG | 1 cut(s) | 300 |
| BseNI | ACTGG | 2 cut(s) | 173, 319 |
| BsmAI | GTCTC | 1 cut(s) | 305 |
| BsmI | GAATGC | 1 cut(s) | 139 |
| Bsp143I | GATC | 2 cut(s) | 91, 109 |
| BspCNI | CTCAG | 1 cut(s) | 301 |
| BspHI | TCATGA | 2 cut(s) | 324, 336 |
| BspPI | GGATC | 1 cut(s) | 104 |
| BsrI | ACTGG | 2 cut(s) | 173, 319 |
| BssMI | GATC | 2 cut(s) | 91, 109 |
| Bst6I | CTCTTC | 1 cut(s) | 203 |
| BstDEI | CTNAG | 2 cut(s) | 129, 309 |
| BstF5I | GGATG | 2 cut(s) | 219, 237 |
| BstKTI | GATC | 2 cut(s) | 94, 112 |
| BstMAI | GTCTC | 1 cut(s) | 305 |
| BstMBI | GATC | 2 cut(s) | 91, 109 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 134 |
| BstV2I | GAAGAC | 1 cut(s) | 325 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| BtsCI | GGATG | 2 cut(s) | 219, 237 |
| BtsI | GCAGTG | 1 cut(s) | 229 |
| BtsIMutI | CAGTG | 2 cut(s) | 191, 229 |
| CaiI | CAGNNNCTG | 1 cut(s) | 248 |
| CciI | TCATGA | 2 cut(s) | 324, 336 |
| Csp6I | GTAC | 3 cut(s) | 141, 172, 289 |
| CviAII | CATG | 4 cut(s) | 95, 268, 325, 337 |
| CviJI | RGCY | 3 cut(s) | 33, 128, 308 |
| CviKI_1 | RGCY | 3 cut(s) | 33, 128, 308 |
| CviQI | GTAC | 3 cut(s) | 141, 172, 289 |
| DdeI | CTNAG | 2 cut(s) | 129, 309 |
| DpnI | GATC | 2 cut(s) | 93, 111 |
| DpnII | GATC | 2 cut(s) | 91, 109 |
| Eam1104I | CTCTTC | 1 cut(s) | 203 |
| EarI | CTCTTC | 1 cut(s) | 203 |
| FaeI | CATG | 4 cut(s) | 98, 271, 328, 340 |
| FaiI | YATR | 9 cut(s) | 8, 62, 96, 145, 147, 269, 326, 338, 358 |
| FatI | CATG | 4 cut(s) | 94, 267, 324, 336 |
| FauNDI | CATATG | 1 cut(s) | 145 |
| FokI | GGATG | 2 cut(s) | 224, 226 |
| FspBI | CTAG | 1 cut(s) | 74 |
| Hin1II | CATG | 4 cut(s) | 98, 271, 328, 340 |
| HinfI | GANTC | 4 cut(s) | 78, 245, 272, 321 |
| Hpy188I | TCNGA | 3 cut(s) | 15, 27, 250 |
| Hpy188III | TCNNGA | 3 cut(s) | 205, 325, 337 |
| HpyAV | CCTTC | 1 cut(s) | 343 |
| HpyCH4V | TGCA | 1 cut(s) | 137 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 134 |
| HpyF3I | CTNAG | 2 cut(s) | 129, 309 |
| Hsp92II | CATG | 4 cut(s) | 98, 271, 328, 340 |
| Kzo9I | GATC | 2 cut(s) | 91, 109 |
| LpnPI | CCDG | 3 cut(s) | 154, 255, 300 |
| LweI | GCATC | 2 cut(s) | 31, 246 |
| MaeI | CTAG | 1 cut(s) | 74 |
| MaeIII | GTNAC | 1 cut(s) | 56 |
| MalI | GATC | 2 cut(s) | 93, 111 |
| MboI | GATC | 2 cut(s) | 91, 109 |
| MboII | GAAGA | 4 cut(s) | 119, 169, 220, 330 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MluCI | AATT | 3 cut(s) | 198, 251, 260 |
| MlyI | GAGTC | 1 cut(s) | 315 |
| MmeI | TCCRAC | 1 cut(s) | 324 |
| MnlI | CCTC | 2 cut(s) | 204, 222 |
| MroXI | GAANNNNTTC | 1 cut(s) | 332 |
| MseI | TTAA | 1 cut(s) | 69 |
| MslI | CAYNNNNRTG | 2 cut(s) | 27, 341 |
| Mva1269I | GAATGC | 1 cut(s) | 139 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 134 |
| NdeI | CATATG | 1 cut(s) | 145 |
| NdeII | GATC | 2 cut(s) | 91, 109 |
| NlaIII | CATG | 4 cut(s) | 98, 271, 328, 340 |
| NmuCI | GTSAC | 1 cut(s) | 56 |
| PagI | TCATGA | 2 cut(s) | 324, 336 |
| PctI | GAATGC | 1 cut(s) | 139 |
| PdmI | GAANNNNTTC | 1 cut(s) | 332 |
| PfeI | GAWTC | 3 cut(s) | 78, 245, 272 |
| PleI | GAGTC | 1 cut(s) | 315 |
| PpsI | GAGTC | 1 cut(s) | 315 |
| PstNI | CAGNNNCTG | 1 cut(s) | 248 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| RsaI | GTAC | 3 cut(s) | 142, 173, 290 |
| RsaNI | GTAC | 3 cut(s) | 141, 172, 289 |
| RseI | CAYNNNNRTG | 2 cut(s) | 27, 341 |
| SaqAI | TTAA | 1 cut(s) | 69 |
| Sau3AI | GATC | 2 cut(s) | 91, 109 |
| ScaI | AGTACT | 1 cut(s) | 290 |
| SchI | GAGTC | 1 cut(s) | 315 |
| SetI | ASST | 1 cut(s) | 310 |
| SfaNI | GCATC | 2 cut(s) | 31, 246 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 27, 341 |
| Sse9I | AATT | 3 cut(s) | 198, 251, 260 |
| SspMI | CTAG | 1 cut(s) | 74 |
| TaqI | TCGA | 1 cut(s) | 90 |
| TasI | AATT | 3 cut(s) | 198, 251, 260 |
| TatI | WGTACW | 2 cut(s) | 140, 288 |
| TfiI | GAWTC | 3 cut(s) | 78, 245, 272 |
| Tru1I | TTAA | 1 cut(s) | 69 |
| Tru9I | TTAA | 1 cut(s) | 69 |
| TscAI | CASTG | 2 cut(s) | 198, 229 |
| TseFI | GTSAC | 1 cut(s) | 56 |
| Tsp45I | GTSAC | 1 cut(s) | 56 |
| TspDTI | ATGAA | 3 cut(s) | 283, 325, 341 |
| TspRI | CASTG | 2 cut(s) | 198, 229 |
| XapI | RAATTY | 1 cut(s) | 260 |
| XmnI | GAANNNNTTC | 1 cut(s) | 332 |
| XspI | CTAG | 1 cut(s) | 74 |
| ZrmI | AGTACT | 1 cut(s) | 290 |