gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 6 - 132 | 2e-16 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 491 |
| AccB1I | GGYRCC | 1 cut(s) | 491 |
| AccII | CGCG | 1 cut(s) | 38 |
| AciI | CCGC | 1 cut(s) | 38 |
| AcoI | YGGCCR | 1 cut(s) | 298 |
| AcuI | CTGAAG | 3 cut(s) | 38, 326, 471 |
| AfaI | GTAC | 5 cut(s) | 80, 104, 369, 484, 493 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 430 |
| AflII | CTTAAG | 1 cut(s) | 602 |
| AgsI | TTSAA | 1 cut(s) | 445 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 337 |
| AjnI | CCWGG | 1 cut(s) | 81 |
| AluBI | AGCT | 5 cut(s) | 10, 136, 242, 304, 352 |
| AluI | AGCT | 5 cut(s) | 10, 136, 242, 304, 352 |
| Alw21I | GWGCWC | 2 cut(s) | 192, 354 |
| Alw26I | GTCTC | 2 cut(s) | 58, 345 |
| AoxI | GGCC | 1 cut(s) | 298 |
| ApeKI | GCWGC | 1 cut(s) | 215 |
| Asp718I | GGTACC | 1 cut(s) | 491 |
| AsuHPI | GGTGA | 2 cut(s) | 145, 188 |
| BaeGI | GKGCMC | 1 cut(s) | 584 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 86, 119 |
| BalI | TGGCCA | 1 cut(s) | 300 |
| BanI | GGYRCC | 1 cut(s) | 491 |
| BanII | GRGCYC | 1 cut(s) | 354 |
| BbsI | GAAGAC | 1 cut(s) | 314 |
| Bbv12I | GWGCWC | 2 cut(s) | 192, 354 |
| BbvI | GCAGC | 1 cut(s) | 202 |
| BccI | CCATC | 1 cut(s) | 554 |
| BciT130I | CCWGG | 1 cut(s) | 83 |
| BcoDI | GTCTC | 2 cut(s) | 58, 345 |
| BfaI | CTAG | 1 cut(s) | 480 |
| BfrI | CTTAAG | 1 cut(s) | 602 |
| BisI | GCNGC | 1 cut(s) | 216 |
| BlsI | GCNGC | 1 cut(s) | 217 |
| BmcAI | AGTACT | 1 cut(s) | 484 |
| Bme1390I | CCNGG | 1 cut(s) | 83 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 337 |
| BmiI | GGNNCC | 2 cut(s) | 493, 634 |
| BmrFI | CCNGG | 1 cut(s) | 83 |
| BmsI | GCATC | 1 cut(s) | 274 |
| BpiI | GAAGAC | 1 cut(s) | 314 |
| BpmI | CTGGAG | 1 cut(s) | 483 |
| BpuEI | CTTGAG | 1 cut(s) | 209 |
| BsaBI | GATNNNNATC | 1 cut(s) | 242 |
| BsaI | GGTCTC | 1 cut(s) | 345 |
| BsaJI | CCNNGG | 1 cut(s) | 424 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 430 |
| Bse1I | ACTGG | 2 cut(s) | 253, 602 |
| Bse3DI | GCAATG | 1 cut(s) | 354 |
| Bse8I | GATNNNNATC | 1 cut(s) | 242 |
| BseBI | CCWGG | 1 cut(s) | 83 |
| BseDI | CCNNGG | 1 cut(s) | 424 |
| BseGI | GGATG | 1 cut(s) | 64 |
| BseJI | GATNNNNATC | 1 cut(s) | 242 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 430 |
| BseMI | GCAATG | 1 cut(s) | 354 |
| BseNI | ACTGG | 2 cut(s) | 253, 602 |
| BseRI | GAGGAG | 1 cut(s) | 389 |
| BseSI | GKGCMC | 1 cut(s) | 584 |
| BseXI | GCAGC | 1 cut(s) | 202 |
| Bsh1236I | CGCG | 1 cut(s) | 38 |
| BshFI | GGCC | 1 cut(s) | 300 |
| BshNI | GGYRCC | 1 cut(s) | 491 |
| BsiHKAI | GWGCWC | 2 cut(s) | 192, 354 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 430 |
| BsmAI | GTCTC | 2 cut(s) | 58, 345 |
| BsmI | GAATGC | 1 cut(s) | 217 |
| BsnI | GGCC | 1 cut(s) | 300 |
| Bso31I | GGTCTC | 1 cut(s) | 345 |
| Bsp1286I | GDGCHC | 3 cut(s) | 192, 354, 584 |
| Bsp1407I | TGTACA | 1 cut(s) | 367 |
| Bsp19I | CCATGG | 1 cut(s) | 424 |
| BspACI | CCGC | 1 cut(s) | 38 |
| BspANI | GGCC | 1 cut(s) | 300 |
| BspFNI | CGCG | 1 cut(s) | 38 |
| BspLI | GGNNCC | 2 cut(s) | 493, 634 |
| BspT107I | GGYRCC | 1 cut(s) | 491 |
| BspTI | CTTAAG | 1 cut(s) | 602 |
| BspTNI | GGTCTC | 1 cut(s) | 345 |
| BsrDI | GCAATG | 1 cut(s) | 354 |
| BsrGI | TGTACA | 1 cut(s) | 367 |
| BsrI | ACTGG | 2 cut(s) | 253, 602 |
| BssECI | CCNNGG | 1 cut(s) | 424 |
| BssT1I | CCWWGG | 1 cut(s) | 424 |
| Bst2UI | CCWGG | 1 cut(s) | 83 |
| Bst4CI | ACNGT | 1 cut(s) | 403 |
| Bst6I | CTCTTC | 2 cut(s) | 566, 602 |
| BstAFI | CTTAAG | 1 cut(s) | 602 |
| BstAUI | TGTACA | 1 cut(s) | 367 |
| BstC8I | GCNNGC | 1 cut(s) | 302 |
| BstDEI | CTNAG | 2 cut(s) | 585, 621 |
| BstDSI | CCRYGG | 1 cut(s) | 424 |
| BstF5I | GGATG | 1 cut(s) | 64 |
| BstFNI | CGCG | 1 cut(s) | 38 |
| BstMAI | GTCTC | 2 cut(s) | 58, 345 |
| BstNI | CCWGG | 1 cut(s) | 83 |
| BstSCI | CCNGG | 1 cut(s) | 81 |
| BstSLI | GKGCMC | 1 cut(s) | 584 |
| BstUI | CGCG | 1 cut(s) | 38 |
| BstV1I | GCAGC | 1 cut(s) | 202 |
| BstV2I | GAAGAC | 1 cut(s) | 314 |
| BsuRI | GGCC | 1 cut(s) | 300 |
| BtgI | CCRYGG | 1 cut(s) | 424 |
| BtsCI | GGATG | 1 cut(s) | 64 |
| BtsI | GCAGTG | 1 cut(s) | 281 |
| BtsIMutI | CAGTG | 2 cut(s) | 272, 281 |
| Cac8I | GCNNGC | 1 cut(s) | 302 |
| CseI | GACGC | 1 cut(s) | 44 |
| Csp6I | GTAC | 5 cut(s) | 79, 103, 368, 483, 492 |
| CviAII | CATG | 5 cut(s) | 28, 157, 425, 435, 568 |
| CviJI | RGCY | 9 cut(s) | 10, 122, 136, 242, 300, 304, 352, 478, 601 |
| CviKI_1 | RGCY | 9 cut(s) | 10, 122, 136, 242, 300, 304, 352, 478, 601 |
| CviQI | GTAC | 5 cut(s) | 79, 103, 368, 483, 492 |
| DdeI | CTNAG | 2 cut(s) | 585, 621 |
| DriI | GACNNNNNGTC | 1 cut(s) | 337 |
| EaeI | YGGCCR | 1 cut(s) | 298 |
| Eam1104I | CTCTTC | 2 cut(s) | 566, 602 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 337 |
| EarI | CTCTTC | 2 cut(s) | 566, 602 |
| Ecl136II | GAGCTC | 1 cut(s) | 352 |
| Eco130I | CCWWGG | 1 cut(s) | 424 |
| Eco24I | GRGCYC | 1 cut(s) | 354 |
| Eco31I | GGTCTC | 1 cut(s) | 345 |
| Eco53kI | GAGCTC | 1 cut(s) | 352 |
| Eco57I | CTGAAG | 3 cut(s) | 38, 326, 471 |
| EcoICRI | GAGCTC | 1 cut(s) | 352 |
| EcoRII | CCWGG | 1 cut(s) | 81 |
| EcoT14I | CCWWGG | 1 cut(s) | 424 |
| EcoT38I | GRGCYC | 1 cut(s) | 354 |
| ErhI | CCWWGG | 1 cut(s) | 424 |
| FaeI | CATG | 5 cut(s) | 31, 160, 428, 438, 571 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 530, 562 |
| FatI | CATG | 5 cut(s) | 27, 156, 424, 434, 567 |
| Fnu4HI | GCNGC | 1 cut(s) | 216 |
| FokI | GGATG | 1 cut(s) | 71 |
| FriOI | GRGCYC | 1 cut(s) | 354 |
| Fsp4HI | GCNGC | 1 cut(s) | 216 |
| FspBI | CTAG | 1 cut(s) | 480 |
| GluI | GCNGC | 1 cut(s) | 216 |
| GsuI | CTGGAG | 1 cut(s) | 483 |
| HaeIII | GGCC | 1 cut(s) | 300 |
| HgaI | GACGC | 1 cut(s) | 44 |
| Hin1II | CATG | 5 cut(s) | 31, 160, 428, 438, 571 |
| HinfI | GANTC | 1 cut(s) | 143 |
| HphI | GGTGA | 2 cut(s) | 145, 188 |
| Hpy166II | GTNNAC | 2 cut(s) | 368, 406 |
| Hpy188I | TCNGA | 2 cut(s) | 18, 58 |
| Hpy8I | GTNNAC | 2 cut(s) | 368, 406 |
| Hpy99I | CGWCG | 1 cut(s) | 251 |
| HpyAV | CCTTC | 4 cut(s) | 56, 112, 385, 516 |
| HpyCH4III | ACNGT | 1 cut(s) | 403 |
| HpyCH4V | TGCA | 4 cut(s) | 95, 218, 235, 265 |
| HpyF3I | CTNAG | 2 cut(s) | 585, 621 |
| Hsp92II | CATG | 5 cut(s) | 31, 160, 428, 438, 571 |
| KpnI | GGTACC | 1 cut(s) | 495 |
| LmnI | GCTCC | 1 cut(s) | 187 |
| Lsp1109I | GCAGC | 1 cut(s) | 202 |
| LweI | GCATC | 1 cut(s) | 274 |
| MaeI | CTAG | 1 cut(s) | 480 |
| MaeIII | GTNAC | 2 cut(s) | 32, 563 |
| MboII | GAAGA | 6 cut(s) | 319, 430, 463, 535, 583, 619 |
| MhlI | GDGCHC | 3 cut(s) | 192, 354, 584 |
| MlsI | TGGCCA | 1 cut(s) | 300 |
| MluNI | TGGCCA | 1 cut(s) | 300 |
| MmeI | TCCRAC | 1 cut(s) | 606 |
| MnlI | CCTC | 7 cut(s) | 38, 297, 367, 370, 432, 605, 622 |
| Mox20I | TGGCCA | 1 cut(s) | 300 |
| MscI | TGGCCA | 1 cut(s) | 300 |
| MseI | TTAA | 2 cut(s) | 537, 603 |
| Msp20I | TGGCCA | 1 cut(s) | 300 |
| MspA1I | CMGCKG | 1 cut(s) | 304 |
| MspCI | CTTAAG | 1 cut(s) | 602 |
| MspR9I | CCNGG | 1 cut(s) | 83 |
| Mva1269I | GAATGC | 1 cut(s) | 217 |
| MvaI | CCWGG | 1 cut(s) | 83 |
| MvnI | CGCG | 1 cut(s) | 38 |
| NcoI | CCATGG | 1 cut(s) | 424 |
| NlaIII | CATG | 5 cut(s) | 31, 160, 428, 438, 571 |
| NlaIV | GGNNCC | 2 cut(s) | 493, 634 |
| NmuCI | GTSAC | 2 cut(s) | 32, 563 |
| PctI | GAATGC | 1 cut(s) | 217 |
| PfeI | GAWTC | 1 cut(s) | 143 |
| PkrI | GCNGC | 1 cut(s) | 217 |
| Psp124BI | GAGCTC | 1 cut(s) | 354 |
| Psp6I | CCWGG | 1 cut(s) | 81 |
| PspGI | CCWGG | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 2 cut(s) | 493, 634 |
| PvuII | CAGCTG | 1 cut(s) | 304 |
| RsaI | GTAC | 5 cut(s) | 80, 104, 369, 484, 493 |
| RsaNI | GTAC | 5 cut(s) | 79, 103, 368, 483, 492 |
| SacI | GAGCTC | 1 cut(s) | 354 |
| SaqAI | TTAA | 2 cut(s) | 537, 603 |
| SatI | GCNGC | 1 cut(s) | 216 |
| ScaI | AGTACT | 1 cut(s) | 484 |
| ScrFI | CCNGG | 1 cut(s) | 83 |
| SduI | GDGCHC | 3 cut(s) | 192, 354, 584 |
| SfaNI | GCATC | 1 cut(s) | 274 |
| SmlI | CTYRAG | 2 cut(s) | 224, 602 |
| SmoI | CTYRAG | 2 cut(s) | 224, 602 |
| SsiI | CCGC | 1 cut(s) | 38 |
| SspMI | CTAG | 1 cut(s) | 480 |
| SstI | GAGCTC | 1 cut(s) | 354 |
| StyD4I | CCNGG | 1 cut(s) | 81 |
| StyI | CCWWGG | 1 cut(s) | 424 |
| TaaI | ACNGT | 1 cut(s) | 403 |
| TaqI | TCGA | 1 cut(s) | 246 |
| TatI | WGTACW | 2 cut(s) | 367, 482 |
| TfiI | GAWTC | 1 cut(s) | 143 |
| Tru1I | TTAA | 2 cut(s) | 537, 603 |
| Tru9I | TTAA | 2 cut(s) | 537, 603 |
| TscAI | CASTG | 2 cut(s) | 279, 288 |
| TseFI | GTSAC | 2 cut(s) | 32, 563 |
| TseI | GCWGC | 1 cut(s) | 215 |
| Tsp45I | GTSAC | 2 cut(s) | 32, 563 |
| TspDTI | ATGAA | 5 cut(s) | 75, 173, 212, 247, 584 |
| TspRI | CASTG | 2 cut(s) | 279, 288 |
| Vha464I | CTTAAG | 1 cut(s) | 602 |
| XspI | CTAG | 1 cut(s) | 480 |
| ZrmI | AGTACT | 1 cut(s) | 484 |