Pfam:UBN2_2
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 36 - 199 | 2.6e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 516 |
| AarI | CACCTGC | 1 cut(s) | 136 |
| Acc36I | ACCTGC | 1 cut(s) | 136 |
| Acc65I | GGTACC | 1 cut(s) | 668 |
| AccB1I | GGYRCC | 1 cut(s) | 668 |
| AccI | GTMKAC | 1 cut(s) | 250 |
| AclWI | GGATC | 3 cut(s) | 52, 116, 715 |
| AcsI | RAATTY | 5 cut(s) | 221, 299, 475, 641, 724 |
| AcuI | CTGAAG | 1 cut(s) | 236 |
| AfaI | GTAC | 4 cut(s) | 173, 462, 567, 670 |
| AflII | CTTAAG | 1 cut(s) | 113 |
| AgsI | TTSAA | 5 cut(s) | 32, 304, 446, 475, 558 |
| AjnI | CCWGG | 2 cut(s) | 456, 766 |
| AluBI | AGCT | 4 cut(s) | 79, 320, 413, 648 |
| AluI | AGCT | 4 cut(s) | 79, 320, 413, 648 |
| AlwI | GGATC | 3 cut(s) | 52, 116, 715 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 236 |
| AoxI | GGCC | 1 cut(s) | 653 |
| ApeKI | GCWGC | 2 cut(s) | 79, 413 |
| ApoI | RAATTY | 5 cut(s) | 221, 299, 475, 641, 724 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 754, 786 |
| Asp718I | GGTACC | 1 cut(s) | 668 |
| AspS9I | GGNCC | 1 cut(s) | 427 |
| AvaII | GGWCC | 1 cut(s) | 427 |
| AxyI | CCTNAGG | 1 cut(s) | 13 |
| BanI | GGYRCC | 1 cut(s) | 668 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 661, 693 |
| BbsI | GAAGAC | 1 cut(s) | 453 |
| BbvI | GCAGC | 2 cut(s) | 66, 400 |
| BccI | CCATC | 1 cut(s) | 183 |
| BciT130I | CCWGG | 2 cut(s) | 458, 768 |
| BfaI | CTAG | 4 cut(s) | 86, 206, 270, 711 |
| BfmI | CTRYAG | 1 cut(s) | 649 |
| BfrI | CTTAAG | 1 cut(s) | 113 |
| BfuAI | ACCTGC | 1 cut(s) | 136 |
| BisI | GCNGC | 2 cut(s) | 80, 414 |
| BlsI | GCNGC | 2 cut(s) | 81, 415 |
| Bme1390I | CCNGG | 2 cut(s) | 458, 768 |
| Bme18I | GGWCC | 1 cut(s) | 427 |
| BmgT120I | GGNCC | 1 cut(s) | 427 |
| BmiI | GGNNCC | 1 cut(s) | 670 |
| BmrFI | CCNGG | 2 cut(s) | 458, 768 |
| BmsI | GCATC | 3 cut(s) | 91, 223, 492 |
| BpiI | GAAGAC | 1 cut(s) | 453 |
| BpuEI | CTTGAG | 1 cut(s) | 407 |
| Bse1I | ACTGG | 1 cut(s) | 150 |
| Bse21I | CCTNAGG | 1 cut(s) | 13 |
| BseBI | CCWGG | 2 cut(s) | 458, 768 |
| BseMII | CTCAG | 4 cut(s) | 246, 252, 704, 716 |
| BseNI | ACTGG | 1 cut(s) | 150 |
| BseXI | GCAGC | 2 cut(s) | 66, 400 |
| BshFI | GGCC | 1 cut(s) | 655 |
| BshNI | GGYRCC | 1 cut(s) | 668 |
| BsnI | GGCC | 1 cut(s) | 655 |
| Bsp1407I | TGTACA | 1 cut(s) | 565 |
| Bsp143I | GATC | 3 cut(s) | 44, 121, 707 |
| BspANI | GGCC | 1 cut(s) | 655 |
| BspCNI | CTCAG | 4 cut(s) | 247, 253, 703, 715 |
| BspLI | GGNNCC | 1 cut(s) | 670 |
| BspMI | ACCTGC | 1 cut(s) | 136 |
| BspPI | GGATC | 3 cut(s) | 52, 116, 715 |
| BspT107I | GGYRCC | 1 cut(s) | 668 |
| BspTI | CTTAAG | 1 cut(s) | 113 |
| BsrGI | TGTACA | 1 cut(s) | 565 |
| BsrI | ACTGG | 1 cut(s) | 150 |
| BssMI | GATC | 3 cut(s) | 44, 121, 707 |
| BssNAI | GTATAC | 1 cut(s) | 251 |
| Bst1107I | GTATAC | 1 cut(s) | 251 |
| Bst2UI | CCWGG | 2 cut(s) | 458, 768 |
| Bst6I | CTCTTC | 1 cut(s) | 567 |
| BstAFI | CTTAAG | 1 cut(s) | 113 |
| BstAUI | TGTACA | 1 cut(s) | 565 |
| BstC8I | GCNNGC | 1 cut(s) | 623 |
| BstDEI | CTNAG | 6 cut(s) | 13, 255, 261, 690, 702, 828 |
| BstKTI | GATC | 3 cut(s) | 47, 124, 710 |
| BstMBI | GATC | 3 cut(s) | 44, 121, 707 |
| BstNI | CCWGG | 2 cut(s) | 458, 768 |
| BstSCI | CCNGG | 2 cut(s) | 456, 766 |
| BstSFI | CTRYAG | 1 cut(s) | 649 |
| BstV1I | GCAGC | 2 cut(s) | 66, 400 |
| BstV2I | GAAGAC | 1 cut(s) | 453 |
| BstX2I | RGATCY | 2 cut(s) | 121, 707 |
| BstYI | RGATCY | 2 cut(s) | 121, 707 |
| BstZ17I | GTATAC | 1 cut(s) | 251 |
| Bsu36I | CCTNAGG | 1 cut(s) | 13 |
| BsuRI | GGCC | 1 cut(s) | 655 |
| BveI | ACCTGC | 1 cut(s) | 136 |
| Cac8I | GCNNGC | 1 cut(s) | 623 |
| CaiI | CAGNNNCTG | 1 cut(s) | 236 |
| Cfr13I | GGNCC | 1 cut(s) | 427 |
| Csp6I | GTAC | 4 cut(s) | 172, 461, 566, 669 |
| CviAII | CATG | 3 cut(s) | 107, 355, 773 |
| CviJI | RGCY | 8 cut(s) | 79, 320, 413, 625, 648, 655, 766, 808 |
| CviKI_1 | RGCY | 8 cut(s) | 79, 320, 413, 625, 648, 655, 766, 808 |
| CviQI | GTAC | 4 cut(s) | 172, 461, 566, 669 |
| DdeI | CTNAG | 6 cut(s) | 13, 255, 261, 690, 702, 828 |
| DpnI | GATC | 3 cut(s) | 46, 123, 709 |
| DpnII | GATC | 3 cut(s) | 44, 121, 707 |
| DraI | TTTAAA | 5 cut(s) | 55, 283, 634, 721, 799 |
| Eam1104I | CTCTTC | 1 cut(s) | 567 |
| EarI | CTCTTC | 1 cut(s) | 567 |
| Eco47I | GGWCC | 1 cut(s) | 427 |
| Eco57I | CTGAAG | 1 cut(s) | 236 |
| Eco81I | CCTNAGG | 1 cut(s) | 13 |
| EcoO109I | RGGNCCY | 1 cut(s) | 427 |
| EcoRI | GAATTC | 1 cut(s) | 475 |
| EcoRII | CCWGG | 2 cut(s) | 456, 766 |
| FaeI | CATG | 3 cut(s) | 110, 358, 776 |
| FatI | CATG | 3 cut(s) | 106, 354, 772 |
| FblI | GTMKAC | 1 cut(s) | 250 |
| Fnu4HI | GCNGC | 2 cut(s) | 80, 414 |
| Fsp4HI | GCNGC | 2 cut(s) | 80, 414 |
| FspBI | CTAG | 4 cut(s) | 86, 206, 270, 711 |
| GluI | GCNGC | 2 cut(s) | 80, 414 |
| HaeIII | GGCC | 1 cut(s) | 655 |
| Hin1II | CATG | 3 cut(s) | 110, 358, 776 |
| HinfI | GANTC | 2 cut(s) | 257, 610 |
| Hpy166II | GTNNAC | 3 cut(s) | 251, 463, 566 |
| Hpy188I | TCNGA | 3 cut(s) | 262, 313, 501 |
| Hpy188III | TCNNGA | 1 cut(s) | 214 |
| Hpy8I | GTNNAC | 3 cut(s) | 251, 463, 566 |
| HpyAV | CCTTC | 4 cut(s) | 391, 463, 520, 583 |
| HpyCH4IV | ACGT | 1 cut(s) | 288 |
| HpyCH4V | TGCA | 4 cut(s) | 82, 416, 505, 789 |
| HpyF3I | CTNAG | 6 cut(s) | 13, 255, 261, 690, 702, 828 |
| HpySE526I | ACGT | 1 cut(s) | 288 |
| Hsp92II | CATG | 3 cut(s) | 110, 358, 776 |
| KpnI | GGTACC | 1 cut(s) | 672 |
| Kzo9I | GATC | 3 cut(s) | 44, 121, 707 |
| Lsp1109I | GCAGC | 2 cut(s) | 66, 400 |
| LweI | GCATC | 3 cut(s) | 91, 223, 492 |
| MaeI | CTAG | 4 cut(s) | 86, 206, 270, 711 |
| MaeII | ACGT | 1 cut(s) | 288 |
| MalI | GATC | 3 cut(s) | 46, 123, 709 |
| MboI | GATC | 3 cut(s) | 44, 121, 707 |
| MboII | GAAGA | 6 cut(s) | 131, 229, 305, 458, 584, 669 |
| MflI | RGATCY | 2 cut(s) | 121, 707 |
| MlyI | GAGTC | 1 cut(s) | 266 |
| MmeI | TCCRAC | 2 cut(s) | 352, 515 |
| MnlI | CCTC | 6 cut(s) | 17, 236, 495, 568, 636, 682 |
| MseI | TTAA | 8 cut(s) | 54, 114, 282, 585, 633, 720, 729, 798 |
| MslI | CAYNNNNRTG | 2 cut(s) | 353, 605 |
| MspCI | CTTAAG | 1 cut(s) | 113 |
| MspR9I | CCNGG | 2 cut(s) | 458, 768 |
| MvaI | CCWGG | 2 cut(s) | 458, 768 |
| NdeII | GATC | 3 cut(s) | 44, 121, 707 |
| NlaIII | CATG | 3 cut(s) | 110, 358, 776 |
| NlaIV | GGNNCC | 1 cut(s) | 670 |
| PaqCI | CACCTGC | 1 cut(s) | 136 |
| PfeI | GAWTC | 1 cut(s) | 610 |
| PflFI | GACNNNGTC | 1 cut(s) | 107 |
| PkrI | GCNGC | 2 cut(s) | 81, 415 |
| PleI | GAGTC | 1 cut(s) | 265 |
| PpsI | GAGTC | 1 cut(s) | 265 |
| PpuMI | RGGWCCY | 1 cut(s) | 427 |
| PsiI | TTATAA | 1 cut(s) | 516 |
| Psp5II | RGGWCCY | 1 cut(s) | 427 |
| Psp6I | CCWGG | 2 cut(s) | 456, 766 |
| PspGI | CCWGG | 2 cut(s) | 456, 766 |
| PspN4I | GGNNCC | 1 cut(s) | 670 |
| PspPI | GGNCC | 1 cut(s) | 427 |
| PspPPI | RGGWCCY | 1 cut(s) | 427 |
| PstNI | CAGNNNCTG | 1 cut(s) | 236 |
| PsuI | RGATCY | 2 cut(s) | 121, 707 |
| PsyI | GACNNNGTC | 1 cut(s) | 107 |
| RsaI | GTAC | 4 cut(s) | 173, 462, 567, 670 |
| RsaNI | GTAC | 4 cut(s) | 172, 461, 566, 669 |
| RseI | CAYNNNNRTG | 2 cut(s) | 353, 605 |
| SaqAI | TTAA | 8 cut(s) | 54, 114, 282, 585, 633, 720, 729, 798 |
| SatI | GCNGC | 2 cut(s) | 80, 414 |
| Sau3AI | GATC | 3 cut(s) | 44, 121, 707 |
| Sau96I | GGNCC | 1 cut(s) | 427 |
| SchI | GAGTC | 1 cut(s) | 266 |
| ScrFI | CCNGG | 2 cut(s) | 458, 768 |
| SfaNI | GCATC | 3 cut(s) | 91, 223, 492 |
| SfcI | CTRYAG | 1 cut(s) | 649 |
| SinI | GGWCC | 1 cut(s) | 427 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 353, 605 |
| SmlI | CTYRAG | 2 cut(s) | 113, 422 |
| SmoI | CTYRAG | 2 cut(s) | 113, 422 |
| SspMI | CTAG | 4 cut(s) | 86, 206, 270, 711 |
| StyD4I | CCNGG | 2 cut(s) | 456, 766 |
| TaiI | ACGT | 1 cut(s) | 291 |
| TatI | WGTACW | 1 cut(s) | 565 |
| TfiI | GAWTC | 1 cut(s) | 610 |
| Tru1I | TTAA | 8 cut(s) | 54, 114, 282, 585, 633, 720, 729, 798 |
| Tru9I | TTAA | 8 cut(s) | 54, 114, 282, 585, 633, 720, 729, 798 |
| TseI | GCWGC | 2 cut(s) | 79, 413 |
| TspDTI | ATGAA | 5 cut(s) | 17, 353, 371, 410, 561 |
| TspGWI | ACGGA | 1 cut(s) | 381 |
| Tth111I | GACNNNGTC | 1 cut(s) | 107 |
| Vha464I | CTTAAG | 1 cut(s) | 113 |
| VpaK11BI | GGWCC | 1 cut(s) | 427 |
| XapI | RAATTY | 5 cut(s) | 221, 299, 475, 641, 724 |
| XmiI | GTMKAC | 1 cut(s) | 250 |
| XspI | CTAG | 4 cut(s) | 86, 206, 270, 711 |