gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 62 - 205 | 1.7e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 558 |
| AccB1I | GGYRCC | 1 cut(s) | 362 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 136, 430 |
| AccI | GTMKAC | 1 cut(s) | 257 |
| AcsI | RAATTY | 1 cut(s) | 335 |
| AcuI | CTGAAG | 2 cut(s) | 210, 378 |
| AfaI | GTAC | 2 cut(s) | 634, 803 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 136, 430 |
| AflII | CTTAAG | 1 cut(s) | 392 |
| AflIII | ACRYGT | 2 cut(s) | 490, 804 |
| AgsI | TTSAA | 3 cut(s) | 41, 65, 385 |
| AluBI | AGCT | 5 cut(s) | 356, 457, 586, 740, 748 |
| AluI | AGCT | 5 cut(s) | 356, 457, 586, 740, 748 |
| Alw26I | GTCTC | 1 cut(s) | 219 |
| AoxI | GGCC | 1 cut(s) | 504 |
| ApeKI | GCWGC | 3 cut(s) | 282, 734, 737 |
| ApoI | RAATTY | 1 cut(s) | 335 |
| AspA2I | CCTAGG | 1 cut(s) | 52 |
| AspLEI | GCGC | 1 cut(s) | 559 |
| AspS9I | GGNCC | 1 cut(s) | 139 |
| AsuHPI | GGTGA | 1 cut(s) | 40 |
| AvaII | GGWCC | 1 cut(s) | 139 |
| AvrII | CCTAGG | 1 cut(s) | 52 |
| BaeGI | GKGCMC | 1 cut(s) | 789 |
| BanI | GGYRCC | 1 cut(s) | 362 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 785 |
| BbsI | GAAGAC | 1 cut(s) | 710 |
| BbvI | GCAGC | 3 cut(s) | 269, 721, 749 |
| BccI | CCATC | 5 cut(s) | 170, 229, 543, 652, 716 |
| BciVI | GTATCC | 1 cut(s) | 262 |
| BcoDI | GTCTC | 1 cut(s) | 219 |
| BfaI | CTAG | 2 cut(s) | 53, 375 |
| BfmI | CTRYAG | 3 cut(s) | 85, 529, 735 |
| BfrI | CTTAAG | 1 cut(s) | 392 |
| BfuI | GTATCC | 1 cut(s) | 262 |
| BisI | GCNGC | 3 cut(s) | 283, 735, 738 |
| BlnI | CCTAGG | 1 cut(s) | 52 |
| BlsI | GCNGC | 3 cut(s) | 284, 736, 739 |
| Bme18I | GGWCC | 1 cut(s) | 139 |
| BmgT120I | GGNCC | 1 cut(s) | 139 |
| BmiI | GGNNCC | 1 cut(s) | 364 |
| BmsI | GCATC | 2 cut(s) | 294, 475 |
| BpiI | GAAGAC | 1 cut(s) | 710 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 575, 607 |
| BsaAI | YACGTR | 1 cut(s) | 805 |
| BsaBI | GATNNNNATC | 1 cut(s) | 443 |
| BsaJI | CCNNGG | 1 cut(s) | 52 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 27, 57 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 136, 430 |
| Bse1I | ACTGG | 1 cut(s) | 221 |
| Bse3DI | GCAATG | 1 cut(s) | 324 |
| Bse8I | GATNNNNATC | 1 cut(s) | 443 |
| BseDI | CCNNGG | 1 cut(s) | 52 |
| BseGI | GGATG | 1 cut(s) | 181 |
| BseJI | GATNNNNATC | 1 cut(s) | 443 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 136, 430 |
| BseMI | GCAATG | 1 cut(s) | 324 |
| BseMII | CTCAG | 3 cut(s) | 288, 344, 449 |
| BseNI | ACTGG | 1 cut(s) | 221 |
| BseSI | GKGCMC | 1 cut(s) | 789 |
| BseXI | GCAGC | 3 cut(s) | 269, 721, 749 |
| BshFI | GGCC | 1 cut(s) | 506 |
| BshNI | GGYRCC | 1 cut(s) | 362 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 136, 430 |
| BsmAI | GTCTC | 1 cut(s) | 219 |
| BsnI | GGCC | 1 cut(s) | 506 |
| Bsp1286I | GDGCHC | 1 cut(s) | 789 |
| Bsp1407I | TGTACA | 1 cut(s) | 632 |
| Bsp143I | GATC | 2 cut(s) | 19, 756 |
| BspANI | GGCC | 1 cut(s) | 506 |
| BspCNI | CTCAG | 3 cut(s) | 289, 343, 450 |
| BspLI | GGNNCC | 1 cut(s) | 364 |
| BspMAI | CTGCAG | 1 cut(s) | 739 |
| BspT107I | GGYRCC | 1 cut(s) | 362 |
| BspTI | CTTAAG | 1 cut(s) | 392 |
| BsrDI | GCAATG | 1 cut(s) | 324 |
| BsrGI | TGTACA | 1 cut(s) | 632 |
| BsrI | ACTGG | 1 cut(s) | 221 |
| BssECI | CCNNGG | 1 cut(s) | 52 |
| BssMI | GATC | 2 cut(s) | 19, 756 |
| BssT1I | CCWWGG | 1 cut(s) | 52 |
| Bst4CI | ACNGT | 2 cut(s) | 274, 649 |
| BstAFI | CTTAAG | 1 cut(s) | 392 |
| BstAUI | TGTACA | 1 cut(s) | 632 |
| BstBAI | YACGTR | 1 cut(s) | 805 |
| BstDEI | CTNAG | 6 cut(s) | 118, 297, 330, 458, 508, 539 |
| BstF5I | GGATG | 1 cut(s) | 181 |
| BstHHI | GCGC | 1 cut(s) | 559 |
| BstKTI | GATC | 2 cut(s) | 22, 759 |
| BstMAI | GTCTC | 1 cut(s) | 219 |
| BstMBI | GATC | 2 cut(s) | 19, 756 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 362 |
| BstNSI | RCATGY | 2 cut(s) | 494, 503 |
| BstSFI | CTRYAG | 3 cut(s) | 85, 529, 735 |
| BstSLI | GKGCMC | 1 cut(s) | 789 |
| BstV1I | GCAGC | 3 cut(s) | 269, 721, 749 |
| BstV2I | GAAGAC | 1 cut(s) | 710 |
| BsuI | GTATCC | 1 cut(s) | 262 |
| BsuRI | GGCC | 1 cut(s) | 506 |
| BtsCI | GGATG | 1 cut(s) | 181 |
| BtsIMutI | CAGTG | 5 cut(s) | 186, 279, 406, 575, 723 |
| CfoI | GCGC | 1 cut(s) | 559 |
| Cfr13I | GGNCC | 1 cut(s) | 139 |
| Csp6I | GTAC | 2 cut(s) | 633, 802 |
| CviAII | CATG | 6 cut(s) | 124, 136, 472, 491, 500, 790 |
| CviQI | GTAC | 2 cut(s) | 633, 802 |
| DdeI | CTNAG | 6 cut(s) | 118, 297, 330, 458, 508, 539 |
| DpnI | GATC | 2 cut(s) | 21, 758 |
| DpnII | GATC | 2 cut(s) | 19, 756 |
| Eco130I | CCWWGG | 1 cut(s) | 52 |
| Eco47I | GGWCC | 1 cut(s) | 139 |
| Eco57I | CTGAAG | 2 cut(s) | 210, 378 |
| EcoT14I | CCWWGG | 1 cut(s) | 52 |
| ErhI | CCWWGG | 1 cut(s) | 52 |
| FaeI | CATG | 6 cut(s) | 127, 139, 475, 494, 503, 793 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 752, 784 |
| FatI | CATG | 6 cut(s) | 123, 135, 471, 490, 499, 789 |
| FblI | GTMKAC | 1 cut(s) | 257 |
| Fnu4HI | GCNGC | 3 cut(s) | 283, 735, 738 |
| FokI | GGATG | 1 cut(s) | 188 |
| Fsp4HI | GCNGC | 3 cut(s) | 283, 735, 738 |
| FspBI | CTAG | 2 cut(s) | 53, 375 |
| FspI | TGCGCA | 1 cut(s) | 558 |
| GlaI | GCGC | 1 cut(s) | 558 |
| GluI | GCNGC | 3 cut(s) | 283, 735, 738 |
| HaeIII | GGCC | 1 cut(s) | 506 |
| HhaI | GCGC | 1 cut(s) | 559 |
| Hin1II | CATG | 6 cut(s) | 127, 139, 475, 494, 503, 793 |
| Hin6I | GCGC | 1 cut(s) | 557 |
| HinP1I | GCGC | 1 cut(s) | 557 |
| HincII | GTYRAC | 2 cut(s) | 310, 652 |
| HindII | GTYRAC | 2 cut(s) | 310, 652 |
| HinfI | GANTC | 3 cut(s) | 61, 369, 512 |
| HphI | GGTGA | 1 cut(s) | 40 |
| Hpy166II | GTNNAC | 5 cut(s) | 258, 310, 633, 635, 652 |
| Hpy188I | TCNGA | 4 cut(s) | 268, 333, 341, 684 |
| Hpy8I | GTNNAC | 5 cut(s) | 258, 310, 633, 635, 652 |
| HpyAV | CCTTC | 2 cut(s) | 353, 619 |
| HpyCH4III | ACNGT | 2 cut(s) | 274, 649 |
| HpyCH4IV | ACGT | 1 cut(s) | 804 |
| HpyCH4V | TGCA | 6 cut(s) | 127, 285, 305, 488, 499, 737 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 362 |
| HpyF3I | CTNAG | 6 cut(s) | 118, 297, 330, 458, 508, 539 |
| HpySE526I | ACGT | 1 cut(s) | 804 |
| Hsp92II | CATG | 6 cut(s) | 127, 139, 475, 494, 503, 793 |
| HspAI | GCGC | 1 cut(s) | 557 |
| Kzo9I | GATC | 2 cut(s) | 19, 756 |
| LpnPI | CCDG | 6 cut(s) | 202, 238, 309, 379, 668, 726 |
| Lsp1109I | GCAGC | 3 cut(s) | 269, 721, 749 |
| LweI | GCATC | 2 cut(s) | 294, 475 |
| MaeI | CTAG | 2 cut(s) | 53, 375 |
| MaeII | ACGT | 1 cut(s) | 804 |
| MaeIII | GTNAC | 2 cut(s) | 46, 347 |
| MalI | GATC | 2 cut(s) | 21, 758 |
| MboI | GATC | 2 cut(s) | 19, 756 |
| MboII | GAAGA | 5 cut(s) | 14, 203, 302, 715, 805 |
| MhlI | GDGCHC | 1 cut(s) | 789 |
| MluCI | AATT | 1 cut(s) | 335 |
| MlyI | GAGTC | 1 cut(s) | 363 |
| MmeI | TCCRAC | 2 cut(s) | 153, 246 |
| MnlI | CCTC | 3 cut(s) | 71, 272, 527 |
| MseI | TTAA | 2 cut(s) | 393, 621 |
| MslI | CAYNNNNRTG | 2 cut(s) | 30, 476 |
| MspA1I | CMGCKG | 1 cut(s) | 740 |
| MspCI | CTTAAG | 1 cut(s) | 392 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 362 |
| NdeII | GATC | 2 cut(s) | 19, 756 |
| NlaIII | CATG | 6 cut(s) | 127, 139, 475, 494, 503, 793 |
| NlaIV | GGNNCC | 1 cut(s) | 364 |
| NmuCI | GTSAC | 2 cut(s) | 46, 347 |
| NsbI | TGCGCA | 1 cut(s) | 558 |
| NspI | RCATGY | 2 cut(s) | 494, 503 |
| PciI | ACATGT | 1 cut(s) | 490 |
| PfeI | GAWTC | 2 cut(s) | 61, 512 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 136, 430 |
| PkrI | GCNGC | 3 cut(s) | 284, 736, 739 |
| PleI | GAGTC | 1 cut(s) | 363 |
| PpsI | GAGTC | 1 cut(s) | 363 |
| Ppu21I | YACGTR | 1 cut(s) | 805 |
| PscI | ACATGT | 1 cut(s) | 490 |
| PspN4I | GGNNCC | 1 cut(s) | 364 |
| PspPI | GGNCC | 1 cut(s) | 139 |
| PstI | CTGCAG | 1 cut(s) | 739 |
| PvuII | CAGCTG | 1 cut(s) | 740 |
| RsaI | GTAC | 2 cut(s) | 634, 803 |
| RsaNI | GTAC | 2 cut(s) | 633, 802 |
| RseI | CAYNNNNRTG | 2 cut(s) | 30, 476 |
| SaqAI | TTAA | 2 cut(s) | 393, 621 |
| SatI | GCNGC | 3 cut(s) | 283, 735, 738 |
| Sau3AI | GATC | 2 cut(s) | 19, 756 |
| Sau96I | GGNCC | 1 cut(s) | 139 |
| SchI | GAGTC | 1 cut(s) | 363 |
| SduI | GDGCHC | 1 cut(s) | 789 |
| SfaNI | GCATC | 2 cut(s) | 294, 475 |
| SfcI | CTRYAG | 3 cut(s) | 85, 529, 735 |
| SinI | GGWCC | 1 cut(s) | 139 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 30, 476 |
| SmlI | CTYRAG | 1 cut(s) | 392 |
| SmoI | CTYRAG | 1 cut(s) | 392 |
| Sse9I | AATT | 1 cut(s) | 335 |
| SspMI | CTAG | 2 cut(s) | 53, 375 |
| StyI | CCWWGG | 1 cut(s) | 52 |
| TaaI | ACNGT | 2 cut(s) | 274, 649 |
| TaiI | ACGT | 1 cut(s) | 807 |
| TaqI | TCGA | 1 cut(s) | 288 |
| TasI | AATT | 1 cut(s) | 335 |
| TatI | WGTACW | 1 cut(s) | 632 |
| TfiI | GAWTC | 2 cut(s) | 61, 512 |
| Tru1I | TTAA | 2 cut(s) | 393, 621 |
| Tru9I | TTAA | 2 cut(s) | 393, 621 |
| TscAI | CASTG | 5 cut(s) | 193, 279, 406, 582, 730 |
| TseFI | GTSAC | 2 cut(s) | 46, 347 |
| TseI | GCWGC | 3 cut(s) | 282, 734, 737 |
| Tsp45I | GTSAC | 2 cut(s) | 46, 347 |
| TspDTI | ATGAA | 3 cut(s) | 14, 171, 806 |
| TspRI | CASTG | 5 cut(s) | 193, 279, 406, 582, 730 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 136, 430 |
| Vha464I | CTTAAG | 1 cut(s) | 392 |
| VpaK11BI | GGWCC | 1 cut(s) | 139 |
| XapI | RAATTY | 1 cut(s) | 335 |
| XceI | RCATGY | 2 cut(s) | 494, 503 |
| XmaJI | CCTAGG | 1 cut(s) | 52 |
| XmiI | GTMKAC | 1 cut(s) | 257 |
| XspI | CTAG | 2 cut(s) | 53, 375 |