Pfam:UBN2_2
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 2 - 86 | 5.9e-08 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 395 |
| Acc36I | ACCTGC | 2 cut(s) | 395, 409 |
| AclWI | GGATC | 1 cut(s) | 107 |
| AcoI | YGGCCR | 1 cut(s) | 438 |
| AcuI | CTGAAG | 1 cut(s) | 434 |
| AfaI | GTAC | 1 cut(s) | 352 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 229, 407 |
| AgsI | TTSAA | 7 cut(s) | 28, 61, 110, 301, 345, 357, 468 |
| AlwI | GGATC | 1 cut(s) | 107 |
| AoxI | GGCC | 2 cut(s) | 409, 438 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 340, 419 |
| BalI | TGGCCA | 1 cut(s) | 440 |
| BclI | TGATCA | 1 cut(s) | 160 |
| BfmI | CTRYAG | 1 cut(s) | 402 |
| BfuAI | ACCTGC | 2 cut(s) | 395, 409 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 229, 407 |
| Bse1I | ACTGG | 2 cut(s) | 352, 441 |
| Bse3DI | GCAATG | 1 cut(s) | 72 |
| BseGI | GGATG | 1 cut(s) | 247 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 229, 407 |
| BseMI | GCAATG | 1 cut(s) | 72 |
| BseMII | CTCAG | 1 cut(s) | 100 |
| BseNI | ACTGG | 2 cut(s) | 352, 441 |
| BseYI | CCCAGC | 1 cut(s) | 77 |
| BshFI | GGCC | 2 cut(s) | 411, 440 |
| BslFI | GGGAC | 1 cut(s) | 271 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 229, 407 |
| BsmFI | GGGAC | 1 cut(s) | 271 |
| BsnI | GGCC | 2 cut(s) | 411, 440 |
| Bsp143I | GATC | 2 cut(s) | 112, 160 |
| BspANI | GGCC | 2 cut(s) | 411, 440 |
| BspCNI | CTCAG | 1 cut(s) | 99 |
| BspHI | TCATGA | 1 cut(s) | 12 |
| BspMAI | CTGCAG | 1 cut(s) | 406 |
| BspMI | ACCTGC | 2 cut(s) | 395, 409 |
| BspPI | GGATC | 1 cut(s) | 107 |
| BsrDI | GCAATG | 1 cut(s) | 72 |
| BsrI | ACTGG | 2 cut(s) | 352, 441 |
| BssMI | GATC | 2 cut(s) | 112, 160 |
| Bst6I | CTCTTC | 1 cut(s) | 302 |
| BstDEI | CTNAG | 1 cut(s) | 86 |
| BstF5I | GGATG | 1 cut(s) | 247 |
| BstKTI | GATC | 2 cut(s) | 115, 163 |
| BstMBI | GATC | 2 cut(s) | 112, 160 |
| BstSFI | CTRYAG | 1 cut(s) | 402 |
| BstX2I | RGATCY | 1 cut(s) | 112 |
| BstYI | RGATCY | 1 cut(s) | 112 |
| BsuRI | GGCC | 2 cut(s) | 411, 440 |
| BtsCI | GGATG | 1 cut(s) | 247 |
| BtsIMutI | CAGTG | 1 cut(s) | 279 |
| BveI | ACCTGC | 2 cut(s) | 395, 409 |
| CciI | TCATGA | 1 cut(s) | 12 |
| Csp6I | GTAC | 1 cut(s) | 351 |
| CviAII | CATG | 3 cut(s) | 13, 100, 283 |
| CviJI | RGCY | 4 cut(s) | 104, 411, 440, 477 |
| CviKI_1 | RGCY | 4 cut(s) | 104, 411, 440, 477 |
| CviQI | GTAC | 1 cut(s) | 351 |
| DdeI | CTNAG | 1 cut(s) | 86 |
| DpnI | GATC | 2 cut(s) | 114, 162 |
| DpnII | GATC | 2 cut(s) | 112, 160 |
| DraI | TTTAAA | 1 cut(s) | 391 |
| EaeI | YGGCCR | 1 cut(s) | 438 |
| Eam1104I | CTCTTC | 1 cut(s) | 302 |
| EarI | CTCTTC | 1 cut(s) | 302 |
| Eco57I | CTGAAG | 1 cut(s) | 434 |
| FaeI | CATG | 3 cut(s) | 16, 103, 286 |
| FaiI | YATR | 6 cut(s) | 14, 54, 56, 101, 159, 284 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 407, 439 |
| FaqI | GGGAC | 1 cut(s) | 271 |
| FatI | CATG | 3 cut(s) | 12, 99, 282 |
| FbaI | TGATCA | 1 cut(s) | 160 |
| FokI | GGATG | 1 cut(s) | 254 |
| GsaI | CCCAGC | 1 cut(s) | 81 |
| HaeIII | GGCC | 2 cut(s) | 411, 440 |
| Hin1II | CATG | 3 cut(s) | 16, 103, 286 |
| HinfI | GANTC | 2 cut(s) | 140, 277 |
| Hpy188I | TCNGA | 3 cut(s) | 70, 89, 376 |
| Hpy188III | TCNNGA | 2 cut(s) | 13, 301 |
| HpyAV | CCTTC | 2 cut(s) | 55, 250 |
| HpyCH4V | TGCA | 3 cut(s) | 22, 404, 429 |
| HpyF3I | CTNAG | 1 cut(s) | 86 |
| Hsp92II | CATG | 3 cut(s) | 16, 103, 286 |
| Ksp22I | TGATCA | 1 cut(s) | 160 |
| Kzo9I | GATC | 2 cut(s) | 112, 160 |
| LpnPI | CCDG | 8 cut(s) | 63, 122, 162, 333, 390, 414, 422, 425 |
| MalI | GATC | 2 cut(s) | 114, 162 |
| MboI | GATC | 2 cut(s) | 112, 160 |
| MboII | GAAGA | 4 cut(s) | 122, 316, 319, 415 |
| MflI | RGATCY | 1 cut(s) | 112 |
| MlsI | TGGCCA | 1 cut(s) | 440 |
| MluCI | AATT | 1 cut(s) | 246 |
| MluNI | TGGCCA | 1 cut(s) | 440 |
| MnlI | CCTC | 6 cut(s) | 9, 83, 232, 303, 363, 453 |
| Mox20I | TGGCCA | 1 cut(s) | 440 |
| MroXI | GAANNNNTTC | 2 cut(s) | 340, 419 |
| MscI | TGGCCA | 1 cut(s) | 440 |
| MseI | TTAA | 4 cut(s) | 249, 384, 390, 446 |
| Msp20I | TGGCCA | 1 cut(s) | 440 |
| NdeII | GATC | 2 cut(s) | 112, 160 |
| NlaIII | CATG | 3 cut(s) | 16, 103, 286 |
| PagI | TCATGA | 1 cut(s) | 12 |
| PaqCI | CACCTGC | 1 cut(s) | 395 |
| PdmI | GAANNNNTTC | 2 cut(s) | 340, 419 |
| PfeI | GAWTC | 2 cut(s) | 140, 277 |
| PspFI | CCCAGC | 1 cut(s) | 77 |
| PstI | CTGCAG | 1 cut(s) | 406 |
| PsuI | RGATCY | 1 cut(s) | 112 |
| RsaI | GTAC | 1 cut(s) | 352 |
| RsaNI | GTAC | 1 cut(s) | 351 |
| SaqAI | TTAA | 4 cut(s) | 249, 384, 390, 446 |
| Sau3AI | GATC | 2 cut(s) | 112, 160 |
| SbfI | CCTGCAGG | 1 cut(s) | 406 |
| SdaI | CCTGCAGG | 1 cut(s) | 406 |
| SetI | ASST | 5 cut(s) | 20, 314, 374, 403, 409 |
| SfcI | CTRYAG | 1 cut(s) | 402 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 406 |
| Sse9I | AATT | 1 cut(s) | 246 |
| TasI | AATT | 1 cut(s) | 246 |
| TfiI | GAWTC | 2 cut(s) | 140, 277 |
| Tru1I | TTAA | 4 cut(s) | 249, 384, 390, 446 |
| Tru9I | TTAA | 4 cut(s) | 249, 384, 390, 446 |
| TscAI | CASTG | 1 cut(s) | 279 |
| TspDTI | ATGAA | 3 cut(s) | 17, 225, 258 |
| TspRI | CASTG | 1 cut(s) | 279 |
| XmnI | GAANNNNTTC | 2 cut(s) | 340, 419 |