gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 113 |
| AfaI | GTAC | 2 cut(s) | 252, 276 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 337 |
| AgsI | TTSAA | 2 cut(s) | 238, 394 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 39, 71 |
| AluBI | AGCT | 1 cut(s) | 398 |
| AluI | AGCT | 1 cut(s) | 398 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 74 |
| ApeKI | GCWGC | 1 cut(s) | 189 |
| ApoI | RAATTY | 1 cut(s) | 113 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 305, 337 |
| BbsI | GAAGAC | 1 cut(s) | 41 |
| BbvI | GCAGC | 1 cut(s) | 201 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BfaI | CTAG | 3 cut(s) | 156, 272, 429 |
| BisI | GCNGC | 1 cut(s) | 190 |
| BlsI | GCNGC | 1 cut(s) | 191 |
| BpiI | GAAGAC | 1 cut(s) | 41 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 189, 221 |
| BpuEI | CTTGAG | 1 cut(s) | 398 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 177, 207, 374, 404 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 337 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 337 |
| BseRI | GAGGAG | 2 cut(s) | 198, 395 |
| BseXI | GCAGC | 1 cut(s) | 201 |
| BslFI | GGGAC | 1 cut(s) | 225 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 337 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsmFI | GGGAC | 1 cut(s) | 225 |
| BstC8I | GCNNGC | 1 cut(s) | 162 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 335 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstNSI | RCATGY | 1 cut(s) | 244 |
| BstV1I | GCAGC | 1 cut(s) | 201 |
| BstV2I | GAAGAC | 1 cut(s) | 41 |
| BtsI | GCAGTG | 1 cut(s) | 423 |
| BtsIMutI | CAGTG | 1 cut(s) | 423 |
| Cac8I | GCNNGC | 1 cut(s) | 162 |
| CaiI | CAGNNNCTG | 1 cut(s) | 74 |
| Csp6I | GTAC | 2 cut(s) | 251, 275 |
| CviAII | CATG | 4 cut(s) | 151, 208, 217, 241 |
| CviJI | RGCY | 5 cut(s) | 50, 134, 160, 164, 398 |
| CviKI_1 | RGCY | 5 cut(s) | 50, 134, 160, 164, 398 |
| CviQI | GTAC | 2 cut(s) | 251, 275 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 335 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FaeI | CATG | 4 cut(s) | 154, 211, 220, 244 |
| FaqI | GGGAC | 1 cut(s) | 225 |
| FatI | CATG | 4 cut(s) | 150, 207, 216, 240 |
| Fnu4HI | GCNGC | 1 cut(s) | 190 |
| Fsp4HI | GCNGC | 1 cut(s) | 190 |
| FspBI | CTAG | 3 cut(s) | 156, 272, 429 |
| GluI | GCNGC | 1 cut(s) | 190 |
| Hin1II | CATG | 4 cut(s) | 154, 211, 220, 244 |
| HindIII | AAGCTT | 1 cut(s) | 396 |
| HinfI | GANTC | 4 cut(s) | 98, 122, 213, 290 |
| Hpy166II | GTNNAC | 1 cut(s) | 318 |
| Hpy188III | TCNNGA | 2 cut(s) | 68, 377 |
| Hpy8I | GTNNAC | 1 cut(s) | 318 |
| HpyAV | CCTTC | 1 cut(s) | 173 |
| HpyCH4V | TGCA | 1 cut(s) | 284 |
| Hsp92II | CATG | 4 cut(s) | 154, 211, 220, 244 |
| LpnPI | CCDG | 7 cut(s) | 8, 81, 111, 146, 272, 344, 371 |
| Lsp1109I | GCAGC | 1 cut(s) | 201 |
| MaeI | CTAG | 3 cut(s) | 156, 272, 429 |
| MaeIII | GTNAC | 1 cut(s) | 421 |
| MboII | GAAGA | 2 cut(s) | 43, 46 |
| MfeI | CAATTG | 1 cut(s) | 366 |
| MluCI | AATT | 4 cut(s) | 113, 233, 265, 366 |
| MlyI | GAGTC | 1 cut(s) | 207 |
| MnlI | CCTC | 5 cut(s) | 158, 176, 179, 331, 373 |
| MseI | TTAA | 2 cut(s) | 117, 414 |
| MunI | CAATTG | 1 cut(s) | 366 |
| NlaIII | CATG | 4 cut(s) | 154, 211, 220, 244 |
| NmuCI | GTSAC | 1 cut(s) | 421 |
| NspI | RCATGY | 1 cut(s) | 244 |
| PfeI | GAWTC | 3 cut(s) | 98, 122, 290 |
| PkrI | GCNGC | 1 cut(s) | 191 |
| PleI | GAGTC | 1 cut(s) | 207 |
| PpsI | GAGTC | 1 cut(s) | 207 |
| PstNI | CAGNNNCTG | 1 cut(s) | 74 |
| RsaI | GTAC | 2 cut(s) | 252, 276 |
| RsaNI | GTAC | 2 cut(s) | 251, 275 |
| SaqAI | TTAA | 2 cut(s) | 117, 414 |
| SatI | GCNGC | 1 cut(s) | 190 |
| SchI | GAGTC | 1 cut(s) | 207 |
| SetI | ASST | 8 cut(s) | 15, 150, 256, 301, 323, 360, 392, 400 |
| SmlI | CTYRAG | 1 cut(s) | 377 |
| SmoI | CTYRAG | 1 cut(s) | 377 |
| Sse9I | AATT | 4 cut(s) | 113, 233, 265, 366 |
| SspMI | CTAG | 3 cut(s) | 156, 272, 429 |
| TasI | AATT | 4 cut(s) | 113, 233, 265, 366 |
| TatI | WGTACW | 1 cut(s) | 274 |
| TfiI | GAWTC | 3 cut(s) | 98, 122, 290 |
| Tru1I | TTAA | 2 cut(s) | 117, 414 |
| Tru9I | TTAA | 2 cut(s) | 117, 414 |
| TscAI | CASTG | 1 cut(s) | 430 |
| TseFI | GTSAC | 1 cut(s) | 421 |
| TseI | GCWGC | 1 cut(s) | 189 |
| Tsp45I | GTSAC | 1 cut(s) | 421 |
| TspDTI | ATGAA | 4 cut(s) | 44, 185, 192, 326 |
| TspGWI | ACGGA | 2 cut(s) | 59, 155 |
| TspRI | CASTG | 1 cut(s) | 430 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 335 |
| XapI | RAATTY | 1 cut(s) | 113 |
| XceI | RCATGY | 1 cut(s) | 244 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 91 |
| XspI | CTAG | 3 cut(s) | 156, 272, 429 |