gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1280 |
| AccB1I | GGYRCC | 1 cut(s) | 1280 |
| AccII | CGCG | 1 cut(s) | 1278 |
| AciI | CCGC | 2 cut(s) | 1276, 1278 |
| AclWI | GGATC | 3 cut(s) | 353, 1080, 1320 |
| AcsI | RAATTY | 3 cut(s) | 206, 598, 1190 |
| AfaI | GTAC | 4 cut(s) | 360, 807, 1035, 1282 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 317, 360 |
| AgsI | TTSAA | 7 cut(s) | 206, 374, 451, 484, 596, 711, 979 |
| AjnI | CCWGG | 1 cut(s) | 214 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 48, 80 |
| AluBI | AGCT | 6 cut(s) | 391, 571, 874, 1213, 1272, 1356 |
| AluI | AGCT | 6 cut(s) | 391, 571, 874, 1213, 1272, 1356 |
| Alw21I | GWGCWC | 4 cut(s) | 262, 318, 655, 1106 |
| Alw26I | GTCTC | 1 cut(s) | 531 |
| AlwI | GGATC | 3 cut(s) | 353, 1080, 1320 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 571 |
| AoxI | GGCC | 1 cut(s) | 274 |
| ApeKI | GCWGC | 1 cut(s) | 568 |
| ApoI | RAATTY | 3 cut(s) | 206, 598, 1190 |
| Asp718I | GGTACC | 1 cut(s) | 1280 |
| AspLEI | GCGC | 1 cut(s) | 366 |
| AspS9I | GGNCC | 1 cut(s) | 275 |
| AsuHPI | GGTGA | 2 cut(s) | 253, 332 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1264, 1297 |
| BanI | GGYRCC | 1 cut(s) | 1280 |
| BanII | GRGCYC | 2 cut(s) | 845, 888 |
| BauI | CACGAG | 1 cut(s) | 330 |
| BbsI | GAAGAC | 1 cut(s) | 381 |
| Bbv12I | GWGCWC | 4 cut(s) | 262, 318, 655, 1106 |
| BbvI | GCAGC | 1 cut(s) | 580 |
| BccI | CCATC | 4 cut(s) | 13, 55, 165, 1118 |
| BceAI | ACGGC | 1 cut(s) | 377 |
| BciT130I | CCWGG | 1 cut(s) | 216 |
| BciVI | GTATCC | 1 cut(s) | 1038 |
| BcoDI | GTCTC | 1 cut(s) | 531 |
| BfaI | CTAG | 1 cut(s) | 1286 |
| BfmI | CTRYAG | 1 cut(s) | 384 |
| BfuI | GTATCC | 1 cut(s) | 1038 |
| BglII | AGATCT | 2 cut(s) | 230, 1333 |
| BisI | GCNGC | 1 cut(s) | 569 |
| BlsI | GCNGC | 1 cut(s) | 570 |
| BmcAI | AGTACT | 1 cut(s) | 1035 |
| Bme1390I | CCNGG | 1 cut(s) | 216 |
| BmgT120I | GGNCC | 1 cut(s) | 275 |
| BmiI | GGNNCC | 4 cut(s) | 296, 408, 844, 1282 |
| BmrFI | CCNGG | 1 cut(s) | 216 |
| BmrI | ACTGGG | 1 cut(s) | 581 |
| BmsI | GCATC | 6 cut(s) | 313, 335, 684, 956, 957, 1102 |
| BmuI | ACTGGG | 1 cut(s) | 581 |
| BpiI | GAAGAC | 1 cut(s) | 381 |
| BpmI | CTGGAG | 1 cut(s) | 829 |
| BpuEI | CTTGAG | 1 cut(s) | 493 |
| Bsa29I | ATCGAT | 1 cut(s) | 678 |
| BsaAI | YACGTR | 1 cut(s) | 272 |
| BsaJI | CCNNGG | 3 cut(s) | 215, 537, 1276 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1247, 1277 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 317, 360 |
| Bse1I | ACTGG | 4 cut(s) | 311, 587, 946, 1164 |
| Bse3DI | GCAATG | 2 cut(s) | 373, 416 |
| BseBI | CCWGG | 1 cut(s) | 216 |
| BseCI | ATCGAT | 1 cut(s) | 678 |
| BseDI | CCNNGG | 3 cut(s) | 215, 537, 1276 |
| BseGI | GGATG | 2 cut(s) | 10, 1134 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 317, 360 |
| BseMI | GCAATG | 2 cut(s) | 373, 416 |
| BseMII | CTCAG | 3 cut(s) | 29, 777, 1119 |
| BseNI | ACTGG | 4 cut(s) | 311, 587, 946, 1164 |
| BseRI | GAGGAG | 1 cut(s) | 66 |
| BseXI | GCAGC | 1 cut(s) | 580 |
| BseYI | CCCAGC | 1 cut(s) | 564 |
| Bsh1236I | CGCG | 1 cut(s) | 1278 |
| BshFI | GGCC | 1 cut(s) | 276 |
| BshNI | GGYRCC | 1 cut(s) | 1280 |
| BshVI | ATCGAT | 1 cut(s) | 678 |
| BsiHKAI | GWGCWC | 4 cut(s) | 262, 318, 655, 1106 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 317, 360 |
| BsmAI | GTCTC | 1 cut(s) | 531 |
| BsmI | GAATGC | 2 cut(s) | 226, 1246 |
| BsnI | GGCC | 1 cut(s) | 276 |
| Bsp1286I | GDGCHC | 6 cut(s) | 262, 318, 655, 845, 888, 1106 |
| Bsp143I | GATC | 6 cut(s) | 230, 345, 982, 1072, 1312, 1333 |
| BspACI | CCGC | 2 cut(s) | 1276, 1278 |
| BspANI | GGCC | 1 cut(s) | 276 |
| BspCNI | CTCAG | 3 cut(s) | 28, 776, 1118 |
| BspDI | ATCGAT | 1 cut(s) | 678 |
| BspFNI | CGCG | 1 cut(s) | 1278 |
| BspHI | TCATGA | 1 cut(s) | 1084 |
| BspLI | GGNNCC | 4 cut(s) | 296, 408, 844, 1282 |
| BspPI | GGATC | 3 cut(s) | 353, 1080, 1320 |
| BspQI | GCTCTTC | 1 cut(s) | 893 |
| BspT107I | GGYRCC | 1 cut(s) | 1280 |
| BsrDI | GCAATG | 2 cut(s) | 373, 416 |
| BsrI | ACTGG | 4 cut(s) | 311, 587, 946, 1164 |
| BssECI | CCNNGG | 3 cut(s) | 215, 537, 1276 |
| BssMI | GATC | 6 cut(s) | 230, 345, 982, 1072, 1312, 1333 |
| BssSI | CACGAG | 1 cut(s) | 330 |
| Bst2BI | CACGAG | 1 cut(s) | 330 |
| Bst2UI | CCWGG | 1 cut(s) | 216 |
| Bst4CI | ACNGT | 4 cut(s) | 162, 294, 895, 1058 |
| Bst6I | CTCTTC | 3 cut(s) | 51, 127, 893 |
| BstBAI | YACGTR | 1 cut(s) | 272 |
| BstDEI | CTNAG | 8 cut(s) | 15, 225, 302, 515, 763, 878, 1067, 1105 |
| BstDSI | CCRYGG | 2 cut(s) | 537, 1276 |
| BstF5I | GGATG | 2 cut(s) | 10, 1134 |
| BstFNI | CGCG | 1 cut(s) | 1278 |
| BstHHI | GCGC | 1 cut(s) | 366 |
| BstKTI | GATC | 6 cut(s) | 233, 348, 985, 1075, 1315, 1336 |
| BstMAI | GTCTC | 1 cut(s) | 531 |
| BstMBI | GATC | 6 cut(s) | 230, 345, 982, 1072, 1312, 1333 |
| BstNI | CCWGG | 1 cut(s) | 216 |
| BstSCI | CCNGG | 1 cut(s) | 214 |
| BstSFI | CTRYAG | 1 cut(s) | 384 |
| BstUI | CGCG | 1 cut(s) | 1278 |
| BstV1I | GCAGC | 1 cut(s) | 580 |
| BstV2I | GAAGAC | 1 cut(s) | 381 |
| BstX2I | RGATCY | 5 cut(s) | 230, 345, 1072, 1312, 1333 |
| BstYI | RGATCY | 5 cut(s) | 230, 345, 1072, 1312, 1333 |
| Bsu15I | ATCGAT | 1 cut(s) | 678 |
| BsuI | GTATCC | 1 cut(s) | 1038 |
| BsuRI | GGCC | 1 cut(s) | 276 |
| BsuTUI | ATCGAT | 1 cut(s) | 678 |
| BtgI | CCRYGG | 2 cut(s) | 537, 1276 |
| BtsCI | GGATG | 2 cut(s) | 10, 1134 |
| BtsI | GCAGTG | 1 cut(s) | 1142 |
| BtsIMutI | CAGTG | 3 cut(s) | 318, 1142, 1192 |
| CaiI | CAGNNNCTG | 1 cut(s) | 571 |
| CciI | TCATGA | 1 cut(s) | 1084 |
| CfoI | GCGC | 1 cut(s) | 366 |
| Cfr13I | GGNCC | 1 cut(s) | 275 |
| Cfr42I | CCGCGG | 1 cut(s) | 1279 |
| ClaI | ATCGAT | 1 cut(s) | 678 |
| Csp6I | GTAC | 4 cut(s) | 359, 806, 1034, 1281 |
| CviAII | CATG | 5 cut(s) | 338, 809, 973, 1085, 1152 |
| CviQI | GTAC | 4 cut(s) | 359, 806, 1034, 1281 |
| DdeI | CTNAG | 8 cut(s) | 15, 225, 302, 515, 763, 878, 1067, 1105 |
| DpnI | GATC | 6 cut(s) | 232, 347, 984, 1074, 1314, 1335 |
| DpnII | GATC | 6 cut(s) | 230, 345, 982, 1072, 1312, 1333 |
| Eam1104I | CTCTTC | 3 cut(s) | 51, 127, 893 |
| EarI | CTCTTC | 3 cut(s) | 51, 127, 893 |
| Eco24I | GRGCYC | 2 cut(s) | 845, 888 |
| Eco32I | GATATC | 1 cut(s) | 1329 |
| EcoRII | CCWGG | 1 cut(s) | 214 |
| EcoRV | GATATC | 1 cut(s) | 1329 |
| EcoT22I | ATGCAT | 1 cut(s) | 328 |
| EcoT38I | GRGCYC | 2 cut(s) | 845, 888 |
| FaeI | CATG | 5 cut(s) | 341, 812, 976, 1088, 1155 |
| FatI | CATG | 5 cut(s) | 337, 808, 972, 1084, 1151 |
| Fnu4HI | GCNGC | 1 cut(s) | 569 |
| FokI | GGATG | 2 cut(s) | 17, 1141 |
| FriOI | GRGCYC | 2 cut(s) | 845, 888 |
| Fsp4HI | GCNGC | 1 cut(s) | 569 |
| FspBI | CTAG | 1 cut(s) | 1286 |
| GlaI | GCGC | 1 cut(s) | 365 |
| GluI | GCNGC | 1 cut(s) | 569 |
| GsaI | CCCAGC | 1 cut(s) | 568 |
| GsuI | CTGGAG | 1 cut(s) | 829 |
| HaeIII | GGCC | 1 cut(s) | 276 |
| HhaI | GCGC | 1 cut(s) | 366 |
| Hin1II | CATG | 5 cut(s) | 341, 812, 976, 1088, 1155 |
| Hin6I | GCGC | 1 cut(s) | 364 |
| HinP1I | GCGC | 1 cut(s) | 364 |
| HindIII | AAGCTT | 1 cut(s) | 872 |
| HinfI | GANTC | 1 cut(s) | 1182 |
| HphI | GGTGA | 2 cut(s) | 253, 332 |
| Hpy166II | GTNNAC | 1 cut(s) | 1349 |
| Hpy188III | TCNNGA | 5 cut(s) | 203, 702, 846, 1085, 1159 |
| Hpy8I | GTNNAC | 1 cut(s) | 1349 |
| Hpy99I | CGWCG | 1 cut(s) | 1007 |
| HpyAV | CCTTC | 3 cut(s) | 288, 501, 1283 |
| HpyCH4III | ACNGT | 4 cut(s) | 162, 294, 895, 1058 |
| HpyCH4IV | ACGT | 1 cut(s) | 271 |
| HpyCH4V | TGCA | 8 cut(s) | 110, 326, 618, 868, 947, 1115, 1220, 1244 |
| HpyF3I | CTNAG | 8 cut(s) | 15, 225, 302, 515, 763, 878, 1067, 1105 |
| HpySE526I | ACGT | 1 cut(s) | 271 |
| Hsp92II | CATG | 5 cut(s) | 341, 812, 976, 1088, 1155 |
| HspAI | GCGC | 1 cut(s) | 364 |
| KpnI | GGTACC | 1 cut(s) | 1284 |
| KspI | CCGCGG | 1 cut(s) | 1279 |
| Kzo9I | GATC | 6 cut(s) | 230, 345, 982, 1072, 1312, 1333 |
| LguI | GCTCTTC | 1 cut(s) | 893 |
| LmnI | GCTCC | 3 cut(s) | 539, 658, 848 |
| Lsp1109I | GCAGC | 1 cut(s) | 580 |
| LweI | GCATC | 6 cut(s) | 313, 335, 684, 956, 957, 1102 |
| MaeI | CTAG | 1 cut(s) | 1286 |
| MaeII | ACGT | 1 cut(s) | 271 |
| MaeIII | GTNAC | 2 cut(s) | 794, 857 |
| MalI | GATC | 6 cut(s) | 232, 347, 984, 1074, 1314, 1335 |
| MboI | GATC | 6 cut(s) | 230, 345, 982, 1072, 1312, 1333 |
| MboII | GAAGA | 5 cut(s) | 68, 114, 386, 910, 1315 |
| MfeI | CAATTG | 2 cut(s) | 619, 1245 |
| MflI | RGATCY | 5 cut(s) | 230, 345, 1072, 1312, 1333 |
| MhlI | GDGCHC | 6 cut(s) | 262, 318, 655, 845, 888, 1106 |
| MluCI | AATT | 9 cut(s) | 192, 206, 521, 598, 619, 696, 1190, 1245, 1362 |
| MlyI | GAGTC | 1 cut(s) | 1191 |
| MmeI | TCCRAC | 3 cut(s) | 46, 155, 1113 |
| Mph1103I | ATGCAT | 1 cut(s) | 328 |
| MseI | TTAA | 5 cut(s) | 83, 852, 1170, 1223, 1317 |
| MspA1I | CMGCKG | 2 cut(s) | 571, 1278 |
| MspR9I | CCNGG | 1 cut(s) | 216 |
| MunI | CAATTG | 2 cut(s) | 619, 1245 |
| Mva1269I | GAATGC | 2 cut(s) | 226, 1246 |
| MvaI | CCWGG | 1 cut(s) | 216 |
| MvnI | CGCG | 1 cut(s) | 1278 |
| NdeII | GATC | 6 cut(s) | 230, 345, 982, 1072, 1312, 1333 |
| NlaIII | CATG | 5 cut(s) | 341, 812, 976, 1088, 1155 |
| NlaIV | GGNNCC | 4 cut(s) | 296, 408, 844, 1282 |
| NsiI | ATGCAT | 1 cut(s) | 328 |
| PagI | TCATGA | 1 cut(s) | 1084 |
| PciSI | GCTCTTC | 1 cut(s) | 893 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 684 |
| PctI | GAATGC | 2 cut(s) | 226, 1246 |
| PkrI | GCNGC | 1 cut(s) | 570 |
| PleI | GAGTC | 1 cut(s) | 1190 |
| PpsI | GAGTC | 1 cut(s) | 1190 |
| Ppu21I | YACGTR | 1 cut(s) | 272 |
| Psp6I | CCWGG | 1 cut(s) | 214 |
| PspFI | CCCAGC | 1 cut(s) | 564 |
| PspGI | CCWGG | 1 cut(s) | 214 |
| PspN4I | GGNNCC | 4 cut(s) | 296, 408, 844, 1282 |
| PspPI | GGNCC | 1 cut(s) | 275 |
| PstNI | CAGNNNCTG | 1 cut(s) | 571 |
| PsuI | RGATCY | 5 cut(s) | 230, 345, 1072, 1312, 1333 |
| PvuII | CAGCTG | 1 cut(s) | 571 |
| RsaI | GTAC | 4 cut(s) | 360, 807, 1035, 1282 |
| RsaNI | GTAC | 4 cut(s) | 359, 806, 1034, 1281 |
| SacII | CCGCGG | 1 cut(s) | 1279 |
| SapI | GCTCTTC | 1 cut(s) | 893 |
| SaqAI | TTAA | 5 cut(s) | 83, 852, 1170, 1223, 1317 |
| SatI | GCNGC | 1 cut(s) | 569 |
| Sau3AI | GATC | 6 cut(s) | 230, 345, 982, 1072, 1312, 1333 |
| Sau96I | GGNCC | 1 cut(s) | 275 |
| ScaI | AGTACT | 1 cut(s) | 1035 |
| SchI | GAGTC | 1 cut(s) | 1191 |
| ScrFI | CCNGG | 1 cut(s) | 216 |
| SduI | GDGCHC | 6 cut(s) | 262, 318, 655, 845, 888, 1106 |
| SfaNI | GCATC | 6 cut(s) | 313, 335, 684, 956, 957, 1102 |
| SfcI | CTRYAG | 1 cut(s) | 384 |
| Sfr303I | CCGCGG | 1 cut(s) | 1279 |
| SgrBI | CCGCGG | 1 cut(s) | 1279 |
| SmlI | CTYRAG | 1 cut(s) | 508 |
| SmoI | CTYRAG | 1 cut(s) | 508 |
| Sse9I | AATT | 9 cut(s) | 192, 206, 521, 598, 619, 696, 1190, 1245, 1362 |
| SsiI | CCGC | 2 cut(s) | 1276, 1278 |
| SspMI | CTAG | 1 cut(s) | 1286 |
| StyD4I | CCNGG | 1 cut(s) | 214 |
| TaaI | ACNGT | 4 cut(s) | 162, 294, 895, 1058 |
| TaiI | ACGT | 1 cut(s) | 274 |
| TaqI | TCGA | 3 cut(s) | 678, 1002, 1160 |
| TasI | AATT | 9 cut(s) | 192, 206, 521, 598, 619, 696, 1190, 1245, 1362 |
| TatI | WGTACW | 2 cut(s) | 805, 1033 |
| Tru1I | TTAA | 5 cut(s) | 83, 852, 1170, 1223, 1317 |
| Tru9I | TTAA | 5 cut(s) | 83, 852, 1170, 1223, 1317 |
| TscAI | CASTG | 3 cut(s) | 318, 1149, 1192 |
| TseI | GCWGC | 1 cut(s) | 568 |
| TspDTI | ATGAA | 5 cut(s) | 326, 405, 696, 905, 1073 |
| TspGWI | ACGGA | 2 cut(s) | 287, 526 |
| TspRI | CASTG | 3 cut(s) | 318, 1149, 1192 |
| XapI | RAATTY | 3 cut(s) | 206, 598, 1190 |
| XspI | CTAG | 1 cut(s) | 1286 |
| ZrmI | AGTACT | 1 cut(s) | 1035 |
| Zsp2I | ATGCAT | 1 cut(s) | 328 |