gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 6 |
| AcsI | RAATTY | 1 cut(s) | 36 |
| AcyI | GRCGYC | 1 cut(s) | 308 |
| AdeI | CACNNNGTG | 1 cut(s) | 211 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 251, 317 |
| AgsI | TTSAA | 5 cut(s) | 91, 127, 170, 187, 250 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 312 |
| AjnI | CCWGG | 2 cut(s) | 310, 340 |
| AluBI | AGCT | 3 cut(s) | 22, 47, 258 |
| AluI | AGCT | 3 cut(s) | 22, 47, 258 |
| Alw26I | GTCTC | 1 cut(s) | 194 |
| ApeKI | GCWGC | 1 cut(s) | 419 |
| ApoI | RAATTY | 1 cut(s) | 36 |
| AseI | ATTAAT | 1 cut(s) | 225 |
| AspS9I | GGNCC | 1 cut(s) | 70 |
| AsuHPI | GGTGA | 1 cut(s) | 211 |
| AvaII | GGWCC | 1 cut(s) | 70 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 247, 279 |
| BbvI | GCAGC | 1 cut(s) | 406 |
| BciT130I | CCWGG | 2 cut(s) | 312, 342 |
| BclI | TGATCA | 1 cut(s) | 97 |
| BcoDI | GTCTC | 1 cut(s) | 194 |
| BisI | GCNGC | 1 cut(s) | 420 |
| BlsI | GCNGC | 1 cut(s) | 421 |
| Bme1390I | CCNGG | 2 cut(s) | 312, 342 |
| Bme18I | GGWCC | 1 cut(s) | 70 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 312 |
| BmgT120I | GGNCC | 1 cut(s) | 70 |
| BmrFI | CCNGG | 2 cut(s) | 312, 342 |
| BmsI | GCATC | 1 cut(s) | 223 |
| BpuEI | CTTGAG | 1 cut(s) | 89 |
| BsaAI | YACGTR | 1 cut(s) | 58 |
| BsaHI | GRCGYC | 1 cut(s) | 308 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 251, 317 |
| Bse3DI | GCAATG | 1 cut(s) | 9 |
| BseBI | CCWGG | 2 cut(s) | 312, 342 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 251, 317 |
| BseMI | GCAATG | 1 cut(s) | 9 |
| BseMII | CTCAG | 1 cut(s) | 245 |
| BseXI | GCAGC | 1 cut(s) | 406 |
| BslFI | GGGAC | 1 cut(s) | 228 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 251, 317 |
| BsmAI | GTCTC | 1 cut(s) | 194 |
| BsmFI | GGGAC | 1 cut(s) | 228 |
| Bsp143I | GATC | 2 cut(s) | 97, 108 |
| BspCNI | CTCAG | 1 cut(s) | 244 |
| BsrDI | GCAATG | 1 cut(s) | 9 |
| BssMI | GATC | 2 cut(s) | 97, 108 |
| BssNI | GRCGYC | 1 cut(s) | 308 |
| Bst2UI | CCWGG | 2 cut(s) | 312, 342 |
| Bst4CI | ACNGT | 3 cut(s) | 29, 209, 242 |
| BstACI | GRCGYC | 1 cut(s) | 308 |
| BstBAI | YACGTR | 1 cut(s) | 58 |
| BstDEI | CTNAG | 2 cut(s) | 231, 303 |
| BstKTI | GATC | 2 cut(s) | 100, 111 |
| BstMAI | GTCTC | 1 cut(s) | 194 |
| BstMBI | GATC | 2 cut(s) | 97, 108 |
| BstNI | CCWGG | 2 cut(s) | 312, 342 |
| BstSCI | CCNGG | 2 cut(s) | 310, 340 |
| BstSNI | TACGTA | 1 cut(s) | 58 |
| BstV1I | GCAGC | 1 cut(s) | 406 |
| BtsIMutI | CAGTG | 1 cut(s) | 205 |
| Cfr13I | GGNCC | 1 cut(s) | 70 |
| CseI | GACGC | 1 cut(s) | 316 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CviJI | RGCY | 6 cut(s) | 22, 47, 258, 289, 419, 439 |
| CviKI_1 | RGCY | 6 cut(s) | 22, 47, 258, 289, 419, 439 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 2 cut(s) | 231, 303 |
| DpnI | GATC | 2 cut(s) | 99, 110 |
| DpnII | GATC | 2 cut(s) | 97, 108 |
| DraIII | CACNNNGTG | 1 cut(s) | 211 |
| DriI | GACNNNNNGTC | 1 cut(s) | 312 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 312 |
| Eco105I | TACGTA | 1 cut(s) | 58 |
| Eco47I | GGWCC | 1 cut(s) | 70 |
| EcoRII | CCWGG | 2 cut(s) | 310, 340 |
| FaiI | YATR | 8 cut(s) | 44, 96, 163, 264, 372, 374, 396, 435 |
| FaqI | GGGAC | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 97 |
| FblI | GTMKAC | 1 cut(s) | 6 |
| Fnu4HI | GCNGC | 1 cut(s) | 420 |
| Fsp4HI | GCNGC | 1 cut(s) | 420 |
| GluI | GCNGC | 1 cut(s) | 420 |
| HgaI | GACGC | 1 cut(s) | 316 |
| Hin1I | GRCGYC | 1 cut(s) | 308 |
| HindIII | AAGCTT | 1 cut(s) | 256 |
| HinfI | GANTC | 1 cut(s) | 202 |
| HphI | GGTGA | 1 cut(s) | 211 |
| Hpy166II | GTNNAC | 1 cut(s) | 7 |
| Hpy188I | TCNGA | 1 cut(s) | 234 |
| Hpy188III | TCNNGA | 2 cut(s) | 106, 170 |
| Hpy8I | GTNNAC | 1 cut(s) | 7 |
| HpyAV | CCTTC | 4 cut(s) | 92, 121, 256, 306 |
| HpyCH4III | ACNGT | 3 cut(s) | 29, 209, 242 |
| HpyCH4IV | ACGT | 1 cut(s) | 57 |
| HpyCH4V | TGCA | 4 cut(s) | 14, 214, 284, 387 |
| HpyF3I | CTNAG | 2 cut(s) | 231, 303 |
| HpySE526I | ACGT | 1 cut(s) | 57 |
| Hsp92I | GRCGYC | 1 cut(s) | 308 |
| Ksp22I | TGATCA | 1 cut(s) | 97 |
| Kzo9I | GATC | 2 cut(s) | 97, 108 |
| LpnPI | CCDG | 4 cut(s) | 297, 324, 327, 354 |
| Lsp1109I | GCAGC | 1 cut(s) | 406 |
| LweI | GCATC | 1 cut(s) | 223 |
| MaeII | ACGT | 1 cut(s) | 57 |
| MaeIII | GTNAC | 2 cut(s) | 347, 356 |
| MalI | GATC | 2 cut(s) | 99, 110 |
| MboI | GATC | 2 cut(s) | 97, 108 |
| MboII | GAAGA | 3 cut(s) | 185, 188, 203 |
| MluCI | AATT | 3 cut(s) | 36, 362, 382 |
| MlyI | GAGTC | 1 cut(s) | 196 |
| MseI | TTAA | 3 cut(s) | 33, 75, 225 |
| MspR9I | CCNGG | 2 cut(s) | 312, 342 |
| MvaI | CCWGG | 2 cut(s) | 312, 342 |
| NdeII | GATC | 2 cut(s) | 97, 108 |
| PkrI | GCNGC | 1 cut(s) | 421 |
| PleI | GAGTC | 1 cut(s) | 196 |
| PpsI | GAGTC | 1 cut(s) | 196 |
| Ppu21I | YACGTR | 1 cut(s) | 58 |
| PshBI | ATTAAT | 1 cut(s) | 225 |
| Psp6I | CCWGG | 2 cut(s) | 310, 340 |
| PspGI | CCWGG | 2 cut(s) | 310, 340 |
| PspPI | GGNCC | 1 cut(s) | 70 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| SaqAI | TTAA | 3 cut(s) | 33, 75, 225 |
| SatI | GCNGC | 1 cut(s) | 420 |
| Sau3AI | GATC | 2 cut(s) | 97, 108 |
| Sau96I | GGNCC | 1 cut(s) | 70 |
| SchI | GAGTC | 1 cut(s) | 196 |
| ScrFI | CCNGG | 2 cut(s) | 312, 342 |
| SetI | ASST | 5 cut(s) | 24, 49, 60, 260, 370 |
| SfaNI | GCATC | 1 cut(s) | 223 |
| SinI | GGWCC | 1 cut(s) | 70 |
| SmlI | CTYRAG | 1 cut(s) | 104 |
| SmoI | CTYRAG | 1 cut(s) | 104 |
| SnaBI | TACGTA | 1 cut(s) | 58 |
| Sse9I | AATT | 3 cut(s) | 36, 362, 382 |
| StyD4I | CCNGG | 2 cut(s) | 310, 340 |
| TaaI | ACNGT | 3 cut(s) | 29, 209, 242 |
| TaiI | ACGT | 1 cut(s) | 60 |
| TasI | AATT | 3 cut(s) | 36, 362, 382 |
| Tru1I | TTAA | 3 cut(s) | 33, 75, 225 |
| Tru9I | TTAA | 3 cut(s) | 33, 75, 225 |
| TscAI | CASTG | 1 cut(s) | 212 |
| TseI | GCWGC | 1 cut(s) | 419 |
| TspDTI | ATGAA | 4 cut(s) | 53, 162, 251, 422 |
| TspRI | CASTG | 1 cut(s) | 212 |
| VpaK11BI | GGWCC | 1 cut(s) | 70 |
| VspI | ATTAAT | 1 cut(s) | 225 |
| XapI | RAATTY | 1 cut(s) | 36 |
| XmiI | GTMKAC | 1 cut(s) | 6 |