gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 58 - 205 | 3.6e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 157, 724 |
| AccB1I | GGYRCC | 1 cut(s) | 16 |
| AclWI | GGATC | 3 cut(s) | 12, 126, 703 |
| AcoI | YGGCCR | 1 cut(s) | 573 |
| AcsI | RAATTY | 3 cut(s) | 70, 380, 659 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 515, 680 |
| AflII | CTTAAG | 1 cut(s) | 605 |
| AgsI | TTSAA | 7 cut(s) | 304, 325, 419, 485, 496, 527, 590 |
| AjnI | CCWGG | 3 cut(s) | 114, 200, 673 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 645, 677 |
| AleI | CACNNNNGTG | 1 cut(s) | 108 |
| AluBI | AGCT | 4 cut(s) | 281, 367, 442, 650 |
| AluI | AGCT | 4 cut(s) | 281, 367, 442, 650 |
| Alw26I | GTCTC | 2 cut(s) | 308, 345 |
| AlwI | GGATC | 3 cut(s) | 12, 126, 703 |
| AoxI | GGCC | 3 cut(s) | 268, 518, 573 |
| ApeKI | GCWGC | 4 cut(s) | 152, 171, 434, 610 |
| ApoI | RAATTY | 3 cut(s) | 70, 380, 659 |
| AseI | ATTAAT | 1 cut(s) | 356 |
| AspS9I | GGNCC | 2 cut(s) | 518, 713 |
| AsuHPI | GGTGA | 3 cut(s) | 95, 690, 718 |
| AvaII | GGWCC | 1 cut(s) | 713 |
| BalI | TGGCCA | 1 cut(s) | 575 |
| BanI | GGYRCC | 1 cut(s) | 16 |
| BbvI | GCAGC | 4 cut(s) | 139, 183, 446, 622 |
| BccI | CCATC | 1 cut(s) | 52 |
| BciT130I | CCWGG | 3 cut(s) | 116, 202, 675 |
| BcoDI | GTCTC | 2 cut(s) | 308, 345 |
| BfmI | CTRYAG | 1 cut(s) | 773 |
| BfrI | CTTAAG | 1 cut(s) | 605 |
| BfuAI | ACCTGC | 2 cut(s) | 157, 724 |
| BisI | GCNGC | 4 cut(s) | 153, 172, 435, 611 |
| BlpI | GCTNAGC | 1 cut(s) | 363 |
| BlsI | GCNGC | 4 cut(s) | 154, 173, 436, 612 |
| Bme1390I | CCNGG | 3 cut(s) | 116, 202, 675 |
| Bme18I | GGWCC | 1 cut(s) | 713 |
| BmgT120I | GGNCC | 2 cut(s) | 518, 713 |
| BmiI | GGNNCC | 1 cut(s) | 18 |
| BmrFI | CCNGG | 3 cut(s) | 116, 202, 675 |
| Bpu10I | CCTNAGC | 1 cut(s) | 291 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 363 |
| BpuEI | CTTGAG | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 3 cut(s) | 106, 201, 702 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 515, 680 |
| Bse1I | ACTGG | 1 cut(s) | 271 |
| BseBI | CCWGG | 3 cut(s) | 116, 202, 675 |
| BseDI | CCNNGG | 3 cut(s) | 106, 201, 702 |
| BseGI | GGATG | 1 cut(s) | 472 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 515, 680 |
| BseMII | CTCAG | 5 cut(s) | 90, 168, 354, 524, 743 |
| BseNI | ACTGG | 1 cut(s) | 271 |
| BseRI | GAGGAG | 2 cut(s) | 498, 608 |
| BseXI | GCAGC | 4 cut(s) | 139, 183, 446, 622 |
| BseYI | CCCAGC | 1 cut(s) | 347 |
| BshFI | GGCC | 3 cut(s) | 270, 520, 575 |
| BshNI | GGYRCC | 1 cut(s) | 16 |
| BslFI | GGGAC | 1 cut(s) | 364 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 515, 680 |
| BsmAI | GTCTC | 2 cut(s) | 308, 345 |
| BsmFI | GGGAC | 1 cut(s) | 364 |
| BsnI | GGCC | 3 cut(s) | 270, 520, 575 |
| Bsp143I | GATC | 4 cut(s) | 4, 118, 209, 695 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 363 |
| BspANI | GGCC | 3 cut(s) | 270, 520, 575 |
| BspCNI | CTCAG | 5 cut(s) | 89, 169, 355, 523, 742 |
| BspHI | TCATGA | 1 cut(s) | 736 |
| BspLI | GGNNCC | 1 cut(s) | 18 |
| BspMI | ACCTGC | 2 cut(s) | 157, 724 |
| BspPI | GGATC | 3 cut(s) | 12, 126, 703 |
| BspT107I | GGYRCC | 1 cut(s) | 16 |
| BspTI | CTTAAG | 1 cut(s) | 605 |
| BsrI | ACTGG | 1 cut(s) | 271 |
| BssECI | CCNNGG | 3 cut(s) | 106, 201, 702 |
| BssMI | GATC | 4 cut(s) | 4, 118, 209, 695 |
| BssT1I | CCWWGG | 2 cut(s) | 106, 702 |
| Bst2UI | CCWGG | 3 cut(s) | 116, 202, 675 |
| Bst6I | CTCTTC | 1 cut(s) | 33 |
| BstAFI | CTTAAG | 1 cut(s) | 605 |
| BstC8I | GCNNGC | 1 cut(s) | 401 |
| BstDEI | CTNAG | 6 cut(s) | 76, 177, 291, 363, 510, 729 |
| BstF5I | GGATG | 1 cut(s) | 472 |
| BstKTI | GATC | 4 cut(s) | 7, 121, 212, 698 |
| BstMAI | GTCTC | 2 cut(s) | 308, 345 |
| BstMBI | GATC | 4 cut(s) | 4, 118, 209, 695 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 287, 400, 610, 731 |
| BstNI | CCWGG | 3 cut(s) | 116, 202, 675 |
| BstNSI | RCATGY | 2 cut(s) | 403, 413 |
| BstSCI | CCNGG | 3 cut(s) | 114, 200, 673 |
| BstSFI | CTRYAG | 1 cut(s) | 773 |
| BstV1I | GCAGC | 4 cut(s) | 139, 183, 446, 622 |
| BstX2I | RGATCY | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 118 |
| BsuRI | GGCC | 3 cut(s) | 270, 520, 575 |
| BtsCI | GGATG | 1 cut(s) | 472 |
| BtsIMutI | CAGTG | 1 cut(s) | 174 |
| BveI | ACCTGC | 2 cut(s) | 157, 724 |
| Cac8I | GCNNGC | 1 cut(s) | 401 |
| CciI | TCATGA | 1 cut(s) | 736 |
| Cfr13I | GGNCC | 2 cut(s) | 518, 713 |
| CviAII | CATG | 5 cut(s) | 226, 400, 404, 410, 737 |
| DdeI | CTNAG | 6 cut(s) | 76, 177, 291, 363, 510, 729 |
| DpnI | GATC | 4 cut(s) | 6, 120, 211, 697 |
| DpnII | GATC | 4 cut(s) | 4, 118, 209, 695 |
| EaeI | YGGCCR | 1 cut(s) | 573 |
| Eam1104I | CTCTTC | 1 cut(s) | 33 |
| EarI | CTCTTC | 1 cut(s) | 33 |
| Eco130I | CCWWGG | 2 cut(s) | 106, 702 |
| Eco47I | GGWCC | 1 cut(s) | 713 |
| EcoRII | CCWGG | 3 cut(s) | 114, 200, 673 |
| EcoT14I | CCWWGG | 2 cut(s) | 106, 702 |
| EcoT22I | ATGCAT | 1 cut(s) | 405 |
| ErhI | CCWWGG | 2 cut(s) | 106, 702 |
| FaeI | CATG | 5 cut(s) | 229, 403, 407, 413, 740 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 284, 316 |
| FaqI | GGGAC | 1 cut(s) | 364 |
| FatI | CATG | 5 cut(s) | 225, 399, 403, 409, 736 |
| Fnu4HI | GCNGC | 4 cut(s) | 153, 172, 435, 611 |
| FokI | GGATG | 1 cut(s) | 479 |
| Fsp4HI | GCNGC | 4 cut(s) | 153, 172, 435, 611 |
| GluI | GCNGC | 4 cut(s) | 153, 172, 435, 611 |
| GsaI | CCCAGC | 1 cut(s) | 351 |
| HaeIII | GGCC | 3 cut(s) | 270, 520, 575 |
| Hin1II | CATG | 5 cut(s) | 229, 403, 407, 413, 740 |
| HinfI | GANTC | 3 cut(s) | 316, 448, 470 |
| HphI | GGTGA | 3 cut(s) | 95, 690, 718 |
| Hpy188I | TCNGA | 2 cut(s) | 79, 137 |
| Hpy188III | TCNNGA | 4 cut(s) | 122, 325, 590, 737 |
| HpyAV | CCTTC | 2 cut(s) | 281, 594 |
| HpyCH4V | TGCA | 1 cut(s) | 403 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 287, 400, 610, 731 |
| HpyF3I | CTNAG | 6 cut(s) | 76, 177, 291, 363, 510, 729 |
| Hsp92II | CATG | 5 cut(s) | 229, 403, 407, 413, 740 |
| Kzo9I | GATC | 4 cut(s) | 4, 118, 209, 695 |
| LmnI | GCTCC | 2 cut(s) | 46, 647 |
| Lsp1109I | GCAGC | 4 cut(s) | 139, 183, 446, 622 |
| MalI | GATC | 4 cut(s) | 6, 120, 211, 697 |
| MboI | GATC | 4 cut(s) | 4, 118, 209, 695 |
| MboII | GAAGA | 2 cut(s) | 20, 678 |
| MflI | RGATCY | 1 cut(s) | 118 |
| MlsI | TGGCCA | 1 cut(s) | 575 |
| MluCI | AATT | 5 cut(s) | 70, 380, 485, 569, 659 |
| MluNI | TGGCCA | 1 cut(s) | 575 |
| MlyI | GAGTC | 3 cut(s) | 310, 442, 464 |
| MnlI | CCTC | 8 cut(s) | 64, 172, 285, 516, 519, 586, 589, 686 |
| Mox20I | TGGCCA | 1 cut(s) | 575 |
| Mph1103I | ATGCAT | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 575 |
| MseI | TTAA | 4 cut(s) | 60, 356, 546, 606 |
| MslI | CAYNNNNRTG | 3 cut(s) | 108, 408, 753 |
| Msp20I | TGGCCA | 1 cut(s) | 575 |
| MspCI | CTTAAG | 1 cut(s) | 605 |
| MspR9I | CCNGG | 3 cut(s) | 116, 202, 675 |
| MvaI | CCWGG | 3 cut(s) | 116, 202, 675 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 287, 400, 610, 731 |
| NdeII | GATC | 4 cut(s) | 4, 118, 209, 695 |
| NlaIII | CATG | 5 cut(s) | 229, 403, 407, 413, 740 |
| NlaIV | GGNNCC | 1 cut(s) | 18 |
| NsiI | ATGCAT | 1 cut(s) | 405 |
| NspI | RCATGY | 2 cut(s) | 403, 413 |
| OliI | CACNNNNGTG | 1 cut(s) | 108 |
| PaeI | GCATGC | 1 cut(s) | 403 |
| PagI | TCATGA | 1 cut(s) | 736 |
| PfoI | TCCNGGA | 1 cut(s) | 114 |
| PkrI | GCNGC | 4 cut(s) | 154, 173, 436, 612 |
| PleI | GAGTC | 3 cut(s) | 310, 442, 464 |
| PpsI | GAGTC | 3 cut(s) | 310, 442, 464 |
| PshBI | ATTAAT | 1 cut(s) | 356 |
| Psp6I | CCWGG | 3 cut(s) | 114, 200, 673 |
| PspFI | CCCAGC | 1 cut(s) | 347 |
| PspGI | CCWGG | 3 cut(s) | 114, 200, 673 |
| PspN4I | GGNNCC | 1 cut(s) | 18 |
| PspPI | GGNCC | 2 cut(s) | 518, 713 |
| PsuI | RGATCY | 1 cut(s) | 118 |
| RseI | CAYNNNNRTG | 3 cut(s) | 108, 408, 753 |
| SaqAI | TTAA | 4 cut(s) | 60, 356, 546, 606 |
| SatI | GCNGC | 4 cut(s) | 153, 172, 435, 611 |
| Sau3AI | GATC | 4 cut(s) | 4, 118, 209, 695 |
| Sau96I | GGNCC | 2 cut(s) | 518, 713 |
| SchI | GAGTC | 3 cut(s) | 310, 442, 464 |
| ScrFI | CCNGG | 3 cut(s) | 116, 202, 675 |
| SetI | ASST | 8 cut(s) | 108, 151, 283, 369, 444, 652, 708, 718 |
| SfcI | CTRYAG | 1 cut(s) | 773 |
| SinI | GGWCC | 1 cut(s) | 713 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 108, 408, 753 |
| SmlI | CTYRAG | 2 cut(s) | 276, 605 |
| SmoI | CTYRAG | 2 cut(s) | 276, 605 |
| SphI | GCATGC | 1 cut(s) | 403 |
| Sse9I | AATT | 5 cut(s) | 70, 380, 485, 569, 659 |
| SspI | AATATT | 1 cut(s) | 310 |
| StyD4I | CCNGG | 3 cut(s) | 114, 200, 673 |
| StyI | CCWWGG | 2 cut(s) | 106, 702 |
| TaqI | TCGA | 1 cut(s) | 212 |
| TasI | AATT | 5 cut(s) | 70, 380, 485, 569, 659 |
| Tru1I | TTAA | 4 cut(s) | 60, 356, 546, 606 |
| Tru9I | TTAA | 4 cut(s) | 60, 356, 546, 606 |
| TscAI | CASTG | 1 cut(s) | 181 |
| TseI | GCWGC | 4 cut(s) | 152, 171, 434, 610 |
| TspDTI | ATGAA | 4 cut(s) | 20, 473, 582, 620 |
| TspGWI | ACGGA | 1 cut(s) | 616 |
| TspRI | CASTG | 1 cut(s) | 181 |
| Vha464I | CTTAAG | 1 cut(s) | 605 |
| VpaK11BI | GGWCC | 1 cut(s) | 713 |
| VspI | ATTAAT | 1 cut(s) | 356 |
| XapI | RAATTY | 3 cut(s) | 70, 380, 659 |
| XceI | RCATGY | 2 cut(s) | 403, 413 |
| Zsp2I | ATGCAT | 1 cut(s) | 405 |