gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 5 - 144 | 8.7e-16 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 197 |
| AclWI | GGATC | 1 cut(s) | 497 |
| AcsI | RAATTY | 2 cut(s) | 310, 563 |
| AcuI | CTGAAG | 2 cut(s) | 212, 507 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 94 |
| AgsI | TTSAA | 3 cut(s) | 139, 331, 568 |
| AluBI | AGCT | 7 cut(s) | 84, 155, 256, 289, 337, 385, 494 |
| AluI | AGCT | 7 cut(s) | 84, 155, 256, 289, 337, 385, 494 |
| Alw21I | GWGCWC | 3 cut(s) | 179, 225, 387 |
| AlwI | GGATC | 1 cut(s) | 497 |
| AoxI | GGCC | 1 cut(s) | 546 |
| ApeKI | GCWGC | 2 cut(s) | 248, 353 |
| ApoI | RAATTY | 2 cut(s) | 310, 563 |
| AsuHPI | GGTGA | 1 cut(s) | 290 |
| BaeGI | GKGCMC | 1 cut(s) | 597 |
| BanII | GRGCYC | 1 cut(s) | 387 |
| Bbv12I | GWGCWC | 3 cut(s) | 179, 225, 387 |
| BbvI | GCAGC | 2 cut(s) | 235, 340 |
| BccI | CCATC | 1 cut(s) | 523 |
| BceAI | ACGGC | 1 cut(s) | 117 |
| BclI | TGATCA | 1 cut(s) | 456 |
| BfaI | CTAG | 1 cut(s) | 507 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 472 |
| BisI | GCNGC | 2 cut(s) | 249, 354 |
| BlsI | GCNGC | 2 cut(s) | 250, 355 |
| BmiI | GGNNCC | 1 cut(s) | 374 |
| BmrI | ACTGGG | 1 cut(s) | 315 |
| BmsI | GCATC | 1 cut(s) | 58 |
| BmuI | ACTGGG | 1 cut(s) | 315 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 650 |
| BsaBI | GATNNNNATC | 1 cut(s) | 450 |
| BsaJI | CCNNGG | 1 cut(s) | 549 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 94 |
| Bse1I | ACTGG | 1 cut(s) | 321 |
| Bse3DI | GCAATG | 1 cut(s) | 387 |
| Bse8I | GATNNNNATC | 1 cut(s) | 450 |
| BseDI | CCNNGG | 1 cut(s) | 549 |
| BseGI | GGATG | 2 cut(s) | 39, 451 |
| BseJI | GATNNNNATC | 1 cut(s) | 450 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BseMI | GCAATG | 1 cut(s) | 387 |
| BseNI | ACTGG | 1 cut(s) | 321 |
| BseSI | GKGCMC | 1 cut(s) | 597 |
| BseXI | GCAGC | 2 cut(s) | 235, 340 |
| BshFI | GGCC | 1 cut(s) | 548 |
| BsiHKAI | GWGCWC | 3 cut(s) | 179, 225, 387 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BsmI | GAATGC | 1 cut(s) | 165 |
| BsnI | GGCC | 1 cut(s) | 548 |
| Bsp1286I | GDGCHC | 4 cut(s) | 179, 225, 387, 597 |
| Bsp143I | GATC | 2 cut(s) | 456, 502 |
| BspANI | GGCC | 1 cut(s) | 548 |
| BspLI | GGNNCC | 1 cut(s) | 374 |
| BspPI | GGATC | 1 cut(s) | 497 |
| BsrDI | GCAATG | 1 cut(s) | 387 |
| BsrI | ACTGG | 1 cut(s) | 321 |
| BssECI | CCNNGG | 1 cut(s) | 549 |
| BssMI | GATC | 2 cut(s) | 456, 502 |
| BssNAI | GTATAC | 1 cut(s) | 198 |
| BssT1I | CCWWGG | 1 cut(s) | 549 |
| Bst1107I | GTATAC | 1 cut(s) | 198 |
| Bst4CI | ACNGT | 1 cut(s) | 471 |
| Bst6I | CTCTTC | 2 cut(s) | 402, 596 |
| BstDEI | CTNAG | 1 cut(s) | 654 |
| BstF5I | GGATG | 2 cut(s) | 39, 451 |
| BstKTI | GATC | 2 cut(s) | 459, 505 |
| BstMBI | GATC | 2 cut(s) | 456, 502 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 286, 472 |
| BstNSI | RCATGY | 1 cut(s) | 274 |
| BstSLI | GKGCMC | 1 cut(s) | 597 |
| BstV1I | GCAGC | 2 cut(s) | 235, 340 |
| BstZ17I | GTATAC | 1 cut(s) | 198 |
| BsuRI | GGCC | 1 cut(s) | 548 |
| BtsCI | GGATG | 2 cut(s) | 39, 451 |
| BtsIMutI | CAGTG | 1 cut(s) | 476 |
| CviAII | CATG | 2 cut(s) | 271, 598 |
| DdeI | CTNAG | 1 cut(s) | 654 |
| DpnI | GATC | 2 cut(s) | 458, 504 |
| DpnII | GATC | 2 cut(s) | 456, 502 |
| Eam1104I | CTCTTC | 2 cut(s) | 402, 596 |
| EarI | CTCTTC | 2 cut(s) | 402, 596 |
| Ecl136II | GAGCTC | 1 cut(s) | 385 |
| Eco130I | CCWWGG | 1 cut(s) | 549 |
| Eco24I | GRGCYC | 1 cut(s) | 387 |
| Eco53kI | GAGCTC | 1 cut(s) | 385 |
| Eco57I | CTGAAG | 2 cut(s) | 212, 507 |
| EcoICRI | GAGCTC | 1 cut(s) | 385 |
| EcoRI | GAATTC | 1 cut(s) | 310 |
| EcoT14I | CCWWGG | 1 cut(s) | 549 |
| EcoT38I | GRGCYC | 1 cut(s) | 387 |
| ErhI | CCWWGG | 1 cut(s) | 549 |
| FaeI | CATG | 2 cut(s) | 274, 601 |
| FaiI | YATR | 9 cut(s) | 50, 62, 198, 227, 272, 293, 351, 599, 619 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 68, 100, 273, 305, 560, 592 |
| FatI | CATG | 2 cut(s) | 270, 597 |
| FbaI | TGATCA | 1 cut(s) | 456 |
| FblI | GTMKAC | 1 cut(s) | 197 |
| Fnu4HI | GCNGC | 2 cut(s) | 249, 354 |
| FokI | GGATG | 2 cut(s) | 46, 458 |
| FriOI | GRGCYC | 1 cut(s) | 387 |
| Fsp4HI | GCNGC | 2 cut(s) | 249, 354 |
| FspBI | CTAG | 1 cut(s) | 507 |
| GluI | GCNGC | 2 cut(s) | 249, 354 |
| HaeIII | GGCC | 1 cut(s) | 548 |
| Hin1II | CATG | 2 cut(s) | 274, 601 |
| HinfI | GANTC | 3 cut(s) | 119, 451, 665 |
| HphI | GGTGA | 1 cut(s) | 290 |
| Hpy166II | GTNNAC | 2 cut(s) | 198, 298 |
| Hpy188I | TCNGA | 2 cut(s) | 192, 456 |
| Hpy188III | TCNNGA | 2 cut(s) | 116, 525 |
| Hpy8I | GTNNAC | 2 cut(s) | 198, 298 |
| HpyAV | CCTTC | 3 cut(s) | 70, 424, 667 |
| HpyCH4III | ACNGT | 1 cut(s) | 471 |
| HpyCH4V | TGCA | 6 cut(s) | 128, 251, 280, 403, 612, 635 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 286, 472 |
| HpyF3I | CTNAG | 1 cut(s) | 654 |
| Hsp92II | CATG | 2 cut(s) | 274, 601 |
| Ksp22I | TGATCA | 1 cut(s) | 456 |
| Kzo9I | GATC | 2 cut(s) | 456, 502 |
| LmnI | GCTCC | 3 cut(s) | 220, 372, 658 |
| Lsp1109I | GCAGC | 2 cut(s) | 235, 340 |
| LweI | GCATC | 1 cut(s) | 58 |
| MaeI | CTAG | 1 cut(s) | 507 |
| MaeIII | GTNAC | 1 cut(s) | 436 |
| MalI | GATC | 2 cut(s) | 458, 504 |
| MboI | GATC | 2 cut(s) | 456, 502 |
| MboII | GAAGA | 3 cut(s) | 419, 490, 613 |
| MfeI | CAATTG | 1 cut(s) | 123 |
| MhlI | GDGCHC | 4 cut(s) | 179, 225, 387, 597 |
| MluCI | AATT | 5 cut(s) | 123, 159, 310, 417, 563 |
| MlyI | GAGTC | 2 cut(s) | 113, 659 |
| MnlI | CCTC | 4 cut(s) | 285, 435, 583, 597 |
| MseI | TTAA | 3 cut(s) | 266, 420, 531 |
| MslI | CAYNNNNRTG | 1 cut(s) | 392 |
| MspA1I | CMGCKG | 1 cut(s) | 337 |
| MunI | CAATTG | 1 cut(s) | 123 |
| Mva1269I | GAATGC | 1 cut(s) | 165 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 286, 472 |
| NdeII | GATC | 2 cut(s) | 456, 502 |
| NlaIII | CATG | 2 cut(s) | 274, 601 |
| NlaIV | GGNNCC | 1 cut(s) | 374 |
| NmuCI | GTSAC | 1 cut(s) | 436 |
| NspI | RCATGY | 1 cut(s) | 274 |
| PctI | GAATGC | 1 cut(s) | 165 |
| PfeI | GAWTC | 1 cut(s) | 451 |
| PkrI | GCNGC | 2 cut(s) | 250, 355 |
| PleI | GAGTC | 2 cut(s) | 113, 659 |
| PpsI | GAGTC | 2 cut(s) | 113, 659 |
| Psp124BI | GAGCTC | 1 cut(s) | 387 |
| PspN4I | GGNNCC | 1 cut(s) | 374 |
| PvuII | CAGCTG | 1 cut(s) | 337 |
| RseI | CAYNNNNRTG | 1 cut(s) | 392 |
| SacI | GAGCTC | 1 cut(s) | 387 |
| SaqAI | TTAA | 3 cut(s) | 266, 420, 531 |
| SatI | GCNGC | 2 cut(s) | 249, 354 |
| Sau3AI | GATC | 2 cut(s) | 456, 502 |
| SchI | GAGTC | 2 cut(s) | 113, 659 |
| SduI | GDGCHC | 4 cut(s) | 179, 225, 387, 597 |
| SetI | ASST | 9 cut(s) | 86, 157, 258, 291, 339, 350, 387, 496, 541 |
| SfaNI | GCATC | 1 cut(s) | 58 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 392 |
| Sse9I | AATT | 5 cut(s) | 123, 159, 310, 417, 563 |
| SspMI | CTAG | 1 cut(s) | 507 |
| SstI | GAGCTC | 1 cut(s) | 387 |
| StyI | CCWWGG | 1 cut(s) | 549 |
| TaaI | ACNGT | 1 cut(s) | 471 |
| TasI | AATT | 5 cut(s) | 123, 159, 310, 417, 563 |
| TfiI | GAWTC | 1 cut(s) | 451 |
| Tru1I | TTAA | 3 cut(s) | 266, 420, 531 |
| Tru9I | TTAA | 3 cut(s) | 266, 420, 531 |
| TscAI | CASTG | 1 cut(s) | 476 |
| TseFI | GTSAC | 1 cut(s) | 436 |
| TseI | GCWGC | 2 cut(s) | 248, 353 |
| Tsp45I | GTSAC | 1 cut(s) | 436 |
| TspDTI | ATGAA | 6 cut(s) | 17, 65, 162, 226, 245, 614 |
| TspRI | CASTG | 1 cut(s) | 476 |
| XapI | RAATTY | 2 cut(s) | 310, 563 |
| XceI | RCATGY | 1 cut(s) | 274 |
| XmiI | GTMKAC | 1 cut(s) | 197 |
| XspI | CTAG | 1 cut(s) | 507 |