gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 2 cut(s) | 67, 490 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 62, 376, 391 |
| AflII | CTTAAG | 1 cut(s) | 608 |
| AflIII | ACRYGT | 1 cut(s) | 99 |
| AgsI | TTSAA | 2 cut(s) | 209, 520 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 337 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 239, 271 |
| AluBI | AGCT | 6 cut(s) | 10, 71, 122, 136, 314, 352 |
| AluI | AGCT | 6 cut(s) | 10, 71, 122, 136, 314, 352 |
| Alw21I | GWGCWC | 3 cut(s) | 192, 267, 354 |
| Alw26I | GTCTC | 2 cut(s) | 119, 345 |
| Alw44I | GTGCAC | 1 cut(s) | 263 |
| ApaLI | GTGCAC | 1 cut(s) | 263 |
| ApeKI | GCWGC | 2 cut(s) | 215, 512 |
| AsuHPI | GGTGA | 1 cut(s) | 145 |
| BaeGI | GKGCMC | 1 cut(s) | 267 |
| BanII | GRGCYC | 1 cut(s) | 354 |
| Bbv12I | GWGCWC | 3 cut(s) | 192, 267, 354 |
| BbvI | GCAGC | 2 cut(s) | 202, 524 |
| BclI | TGATCA | 1 cut(s) | 150 |
| BcoDI | GTCTC | 2 cut(s) | 119, 345 |
| BfaI | CTAG | 3 cut(s) | 72, 468, 486 |
| BfmI | CTRYAG | 1 cut(s) | 510 |
| BfrI | CTTAAG | 1 cut(s) | 608 |
| BisI | GCNGC | 2 cut(s) | 216, 513 |
| BlsI | GCNGC | 2 cut(s) | 217, 514 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 337 |
| BmiI | GGNNCC | 2 cut(s) | 172, 640 |
| BpmI | CTGGAG | 1 cut(s) | 198 |
| BsaI | GGTCTC | 1 cut(s) | 345 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 62, 376, 391 |
| Bse1I | ACTGG | 4 cut(s) | 133, 181, 253, 608 |
| Bse3DI | GCAATG | 2 cut(s) | 267, 354 |
| BseGI | GGATG | 2 cut(s) | 207, 253 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 62, 376, 391 |
| BseMI | GCAATG | 2 cut(s) | 267, 354 |
| BseMII | CTCAG | 2 cut(s) | 114, 338 |
| BseNI | ACTGG | 4 cut(s) | 133, 181, 253, 608 |
| BseRI | GAGGAG | 2 cut(s) | 389, 392 |
| BseSI | GKGCMC | 1 cut(s) | 267 |
| BseXI | GCAGC | 2 cut(s) | 202, 524 |
| BsiHKAI | GWGCWC | 3 cut(s) | 192, 267, 354 |
| BslFI | GGGAC | 1 cut(s) | 614 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 62, 376, 391 |
| BsmAI | GTCTC | 2 cut(s) | 119, 345 |
| BsmFI | GGGAC | 1 cut(s) | 614 |
| Bso31I | GGTCTC | 1 cut(s) | 345 |
| Bsp1286I | GDGCHC | 3 cut(s) | 192, 267, 354 |
| Bsp143I | GATC | 1 cut(s) | 150 |
| BspCNI | CTCAG | 2 cut(s) | 115, 337 |
| BspLI | GGNNCC | 2 cut(s) | 172, 640 |
| BspMAI | CTGCAG | 1 cut(s) | 514 |
| BspTI | CTTAAG | 1 cut(s) | 608 |
| BspTNI | GGTCTC | 1 cut(s) | 345 |
| BsrDI | GCAATG | 2 cut(s) | 267, 354 |
| BsrI | ACTGG | 4 cut(s) | 133, 181, 253, 608 |
| BssMI | GATC | 1 cut(s) | 150 |
| Bst4CI | ACNGT | 2 cut(s) | 40, 538 |
| Bst6I | CTCTTC | 1 cut(s) | 572 |
| BstAFI | CTTAAG | 1 cut(s) | 608 |
| BstDEI | CTNAG | 6 cut(s) | 6, 123, 224, 324, 591, 627 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 60 |
| BstF5I | GGATG | 2 cut(s) | 207, 253 |
| BstKTI | GATC | 1 cut(s) | 153 |
| BstMAI | GTCTC | 2 cut(s) | 119, 345 |
| BstMBI | GATC | 1 cut(s) | 150 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 320 |
| BstNSI | RCATGY | 1 cut(s) | 103 |
| BstSFI | CTRYAG | 1 cut(s) | 510 |
| BstSLI | GKGCMC | 1 cut(s) | 267 |
| BstV1I | GCAGC | 2 cut(s) | 202, 524 |
| BtsCI | GGATG | 2 cut(s) | 207, 253 |
| BtsI | GCAGTG | 1 cut(s) | 281 |
| BtsIMutI | CAGTG | 5 cut(s) | 36, 174, 272, 281, 534 |
| Csp6I | GTAC | 2 cut(s) | 66, 489 |
| CviAII | CATG | 5 cut(s) | 28, 100, 157, 320, 574 |
| CviQI | GTAC | 2 cut(s) | 66, 489 |
| DdeI | CTNAG | 6 cut(s) | 6, 123, 224, 324, 591, 627 |
| DpnI | GATC | 1 cut(s) | 152 |
| DpnII | GATC | 1 cut(s) | 150 |
| DriI | GACNNNNNGTC | 1 cut(s) | 337 |
| Eam1104I | CTCTTC | 1 cut(s) | 572 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 337 |
| EarI | CTCTTC | 1 cut(s) | 572 |
| Ecl136II | GAGCTC | 1 cut(s) | 352 |
| Eco24I | GRGCYC | 1 cut(s) | 354 |
| Eco31I | GGTCTC | 1 cut(s) | 345 |
| Eco53kI | GAGCTC | 1 cut(s) | 352 |
| EcoICRI | GAGCTC | 1 cut(s) | 352 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 60 |
| EcoT38I | GRGCYC | 1 cut(s) | 354 |
| FaeI | CATG | 5 cut(s) | 31, 103, 160, 323, 577 |
| FaiI | YATR | 9 cut(s) | 29, 101, 158, 165, 197, 321, 436, 575, 597 |
| FaqI | GGGAC | 1 cut(s) | 614 |
| FatI | CATG | 5 cut(s) | 27, 99, 156, 319, 573 |
| FbaI | TGATCA | 1 cut(s) | 150 |
| Fnu4HI | GCNGC | 2 cut(s) | 216, 513 |
| FokI | GGATG | 2 cut(s) | 214, 260 |
| FriOI | GRGCYC | 1 cut(s) | 354 |
| Fsp4HI | GCNGC | 2 cut(s) | 216, 513 |
| FspBI | CTAG | 3 cut(s) | 72, 468, 486 |
| GluI | GCNGC | 2 cut(s) | 216, 513 |
| GsuI | CTGGAG | 1 cut(s) | 198 |
| Hin1II | CATG | 5 cut(s) | 31, 103, 160, 323, 577 |
| HinfI | GANTC | 2 cut(s) | 143, 406 |
| HphI | GGTGA | 1 cut(s) | 145 |
| Hpy166II | GTNNAC | 1 cut(s) | 265 |
| Hpy188I | TCNGA | 2 cut(s) | 18, 327 |
| Hpy188III | TCNNGA | 2 cut(s) | 56, 107 |
| Hpy8I | GTNNAC | 1 cut(s) | 265 |
| HpyAV | CCTTC | 2 cut(s) | 56, 385 |
| HpyCH4III | ACNGT | 2 cut(s) | 40, 538 |
| HpyCH4V | TGCA | 6 cut(s) | 218, 235, 265, 272, 359, 512 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 320 |
| HpyF3I | CTNAG | 6 cut(s) | 6, 123, 224, 324, 591, 627 |
| Hsp92II | CATG | 5 cut(s) | 31, 103, 160, 323, 577 |
| Ksp22I | TGATCA | 1 cut(s) | 150 |
| Kzo9I | GATC | 1 cut(s) | 150 |
| LmnI | GCTCC | 2 cut(s) | 187, 638 |
| LpnPI | CCDG | 9 cut(s) | 69, 92, 95, 114, 162, 266, 373, 410, 589 |
| Lsp1109I | GCAGC | 2 cut(s) | 202, 524 |
| MaeI | CTAG | 3 cut(s) | 72, 468, 486 |
| MaeIII | GTNAC | 2 cut(s) | 32, 569 |
| MalI | GATC | 1 cut(s) | 152 |
| MboI | GATC | 1 cut(s) | 150 |
| MboII | GAAGA | 1 cut(s) | 589 |
| MhlI | GDGCHC | 3 cut(s) | 192, 267, 354 |
| MlyI | GAGTC | 1 cut(s) | 137 |
| MseI | TTAA | 3 cut(s) | 444, 543, 609 |
| MspCI | CTTAAG | 1 cut(s) | 608 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 320 |
| NdeII | GATC | 1 cut(s) | 150 |
| NlaIII | CATG | 5 cut(s) | 31, 103, 160, 323, 577 |
| NlaIV | GGNNCC | 2 cut(s) | 172, 640 |
| NmuCI | GTSAC | 2 cut(s) | 32, 569 |
| NspI | RCATGY | 1 cut(s) | 103 |
| PciI | ACATGT | 1 cut(s) | 99 |
| PfeI | GAWTC | 1 cut(s) | 406 |
| PkrI | GCNGC | 2 cut(s) | 217, 514 |
| PleI | GAGTC | 1 cut(s) | 137 |
| PpsI | GAGTC | 1 cut(s) | 137 |
| PscI | ACATGT | 1 cut(s) | 99 |
| Psp124BI | GAGCTC | 1 cut(s) | 354 |
| PspN4I | GGNNCC | 2 cut(s) | 172, 640 |
| PstI | CTGCAG | 1 cut(s) | 514 |
| RsaI | GTAC | 2 cut(s) | 67, 490 |
| RsaNI | GTAC | 2 cut(s) | 66, 489 |
| SacI | GAGCTC | 1 cut(s) | 354 |
| SaqAI | TTAA | 3 cut(s) | 444, 543, 609 |
| SatI | GCNGC | 2 cut(s) | 216, 513 |
| Sau3AI | GATC | 1 cut(s) | 150 |
| SchI | GAGTC | 1 cut(s) | 137 |
| SduI | GDGCHC | 3 cut(s) | 192, 267, 354 |
| SfcI | CTRYAG | 1 cut(s) | 510 |
| SmlI | CTYRAG | 1 cut(s) | 608 |
| SmoI | CTYRAG | 1 cut(s) | 608 |
| SspI | AATATT | 1 cut(s) | 91 |
| SspMI | CTAG | 3 cut(s) | 72, 468, 486 |
| SstI | GAGCTC | 1 cut(s) | 354 |
| TaaI | ACNGT | 2 cut(s) | 40, 538 |
| TfiI | GAWTC | 1 cut(s) | 406 |
| Tru1I | TTAA | 3 cut(s) | 444, 543, 609 |
| Tru9I | TTAA | 3 cut(s) | 444, 543, 609 |
| TscAI | CASTG | 5 cut(s) | 43, 181, 279, 288, 541 |
| TseFI | GTSAC | 2 cut(s) | 32, 569 |
| TseI | GCWGC | 2 cut(s) | 215, 512 |
| Tsp45I | GTSAC | 2 cut(s) | 32, 569 |
| TspDTI | ATGAA | 4 cut(s) | 75, 173, 247, 590 |
| TspRI | CASTG | 5 cut(s) | 43, 181, 279, 288, 541 |
| Vha464I | CTTAAG | 1 cut(s) | 608 |
| VneI | GTGCAC | 1 cut(s) | 263 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 60 |
| XceI | RCATGY | 1 cut(s) | 103 |
| XspI | CTAG | 3 cut(s) | 72, 468, 486 |