gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 71 - 225 | 2.1e-14 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 320 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 178 |
| AccBSI | CCGCTC | 1 cut(s) | 54 |
| AciI | CCGC | 1 cut(s) | 52 |
| AcsI | RAATTY | 2 cut(s) | 243, 688 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AfaI | GTAC | 2 cut(s) | 226, 353 |
| AfeI | AGCGCT | 1 cut(s) | 73 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 178, 238 |
| AflII | CTTAAG | 1 cut(s) | 662 |
| AgsI | TTSAA | 5 cut(s) | 14, 359, 488, 550, 799 |
| AjnI | CCWGG | 3 cut(s) | 260, 724, 857 |
| AluBI | AGCT | 5 cut(s) | 115, 344, 368, 496, 541 |
| AluI | AGCT | 5 cut(s) | 115, 344, 368, 496, 541 |
| Alw21I | GWGCWC | 1 cut(s) | 465 |
| Alw26I | GTCTC | 1 cut(s) | 831 |
| Aor51HI | AGCGCT | 1 cut(s) | 73 |
| AoxI | GGCC | 3 cut(s) | 258, 846, 903 |
| ApeKI | GCWGC | 2 cut(s) | 69, 409 |
| ApoI | RAATTY | 2 cut(s) | 243, 688 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 554, 586, 673, 705 |
| AseI | ATTAAT | 1 cut(s) | 629 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 47 |
| AspLEI | GCGC | 1 cut(s) | 74 |
| AspS9I | GGNCC | 1 cut(s) | 258 |
| AsuHPI | GGTGA | 2 cut(s) | 691, 740 |
| AsuNHI | GCTAGC | 1 cut(s) | 496 |
| BanI | GGYRCC | 1 cut(s) | 320 |
| Bbv12I | GWGCWC | 1 cut(s) | 465 |
| BbvI | GCAGC | 2 cut(s) | 81, 396 |
| BccI | CCATC | 1 cut(s) | 759 |
| BciT130I | CCWGG | 3 cut(s) | 262, 726, 859 |
| BcoDI | GTCTC | 1 cut(s) | 831 |
| BfaI | CTAG | 4 cut(s) | 152, 402, 413, 497 |
| BfmI | CTRYAG | 3 cut(s) | 130, 207, 277 |
| BfoI | RGCGCY | 1 cut(s) | 75 |
| BfrI | CTTAAG | 1 cut(s) | 662 |
| BisI | GCNGC | 2 cut(s) | 70, 410 |
| BlsI | GCNGC | 2 cut(s) | 71, 411 |
| Bme1390I | CCNGG | 3 cut(s) | 262, 726, 859 |
| BmgT120I | GGNCC | 1 cut(s) | 258 |
| BmiI | GGNNCC | 3 cut(s) | 322, 617, 882 |
| BmrFI | CCNGG | 3 cut(s) | 262, 726, 859 |
| BmsI | GCATC | 3 cut(s) | 91, 105, 905 |
| BmtI | GCTAGC | 1 cut(s) | 500 |
| Bpu10I | CCTNAGC | 1 cut(s) | 340 |
| BsaJI | CCNNGG | 4 cut(s) | 261, 725, 738, 900 |
| BsaWI | WCCGGW | 1 cut(s) | 85 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 178, 238 |
| Bse1I | ACTGG | 2 cut(s) | 22, 188 |
| BseBI | CCWGG | 3 cut(s) | 262, 726, 859 |
| BseDI | CCNNGG | 4 cut(s) | 261, 725, 738, 900 |
| BseGI | GGATG | 2 cut(s) | 82, 896 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 178, 238 |
| BseMII | CTCAG | 3 cut(s) | 321, 360, 614 |
| BseNI | ACTGG | 2 cut(s) | 22, 188 |
| BseXI | GCAGC | 2 cut(s) | 81, 396 |
| BshFI | GGCC | 3 cut(s) | 260, 848, 905 |
| BshNI | GGYRCC | 1 cut(s) | 320 |
| BsiHKAI | GWGCWC | 1 cut(s) | 465 |
| BsiSI | CCGG | 1 cut(s) | 86 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 178, 238 |
| BsmAI | GTCTC | 1 cut(s) | 831 |
| BsnI | GGCC | 3 cut(s) | 260, 848, 905 |
| Bsp1286I | GDGCHC | 1 cut(s) | 465 |
| BspACI | CCGC | 1 cut(s) | 52 |
| BspANI | GGCC | 3 cut(s) | 260, 848, 905 |
| BspCNI | CTCAG | 3 cut(s) | 322, 361, 613 |
| BspLI | GGNNCC | 3 cut(s) | 322, 617, 882 |
| BspOI | GCTAGC | 1 cut(s) | 500 |
| BspT107I | GGYRCC | 1 cut(s) | 320 |
| BspTI | CTTAAG | 1 cut(s) | 662 |
| BsrBI | CCGCTC | 1 cut(s) | 54 |
| BsrI | ACTGG | 2 cut(s) | 22, 188 |
| BssECI | CCNNGG | 4 cut(s) | 261, 725, 738, 900 |
| BssT1I | CCWWGG | 2 cut(s) | 738, 900 |
| Bst2UI | CCWGG | 3 cut(s) | 262, 726, 859 |
| Bst4CI | ACNGT | 4 cut(s) | 196, 313, 685, 842 |
| Bst6I | CTCTTC | 1 cut(s) | 827 |
| BstAFI | CTTAAG | 1 cut(s) | 662 |
| BstC8I | GCNNGC | 2 cut(s) | 498, 543 |
| BstDEI | CTNAG | 5 cut(s) | 330, 340, 369, 600, 867 |
| BstF5I | GGATG | 2 cut(s) | 82, 896 |
| BstH2I | RGCGCY | 1 cut(s) | 75 |
| BstHHI | GCGC | 1 cut(s) | 74 |
| BstMAI | GTCTC | 1 cut(s) | 831 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 902 |
| BstNI | CCWGG | 3 cut(s) | 262, 726, 859 |
| BstSCI | CCNGG | 3 cut(s) | 260, 724, 857 |
| BstSFI | CTRYAG | 3 cut(s) | 130, 207, 277 |
| BstV1I | GCAGC | 2 cut(s) | 81, 396 |
| BsuRI | GGCC | 3 cut(s) | 260, 848, 905 |
| BtsCI | GGATG | 2 cut(s) | 82, 896 |
| BtsIMutI | CAGTG | 1 cut(s) | 318 |
| Cac8I | GCNNGC | 2 cut(s) | 498, 543 |
| CfoI | GCGC | 1 cut(s) | 74 |
| Cfr13I | GGNCC | 1 cut(s) | 258 |
| Csp6I | GTAC | 2 cut(s) | 225, 352 |
| CviAII | CATG | 6 cut(s) | 30, 430, 442, 511, 653, 829 |
| CviQI | GTAC | 2 cut(s) | 225, 352 |
| DdeI | CTNAG | 5 cut(s) | 330, 340, 369, 600, 867 |
| Eam1104I | CTCTTC | 1 cut(s) | 827 |
| EarI | CTCTTC | 1 cut(s) | 827 |
| Eco130I | CCWWGG | 2 cut(s) | 738, 900 |
| Eco147I | AGGCCT | 1 cut(s) | 848 |
| Eco32I | GATATC | 1 cut(s) | 27 |
| Eco47III | AGCGCT | 1 cut(s) | 73 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| EcoRII | CCWGG | 3 cut(s) | 260, 724, 857 |
| EcoRV | GATATC | 1 cut(s) | 27 |
| EcoT14I | CCWWGG | 2 cut(s) | 738, 900 |
| ErhI | CCWWGG | 2 cut(s) | 738, 900 |
| FaeI | CATG | 6 cut(s) | 33, 433, 445, 514, 656, 832 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 779, 811 |
| FatI | CATG | 6 cut(s) | 29, 429, 441, 510, 652, 828 |
| Fnu4HI | GCNGC | 2 cut(s) | 70, 410 |
| FokI | GGATG | 2 cut(s) | 69, 883 |
| Fsp4HI | GCNGC | 2 cut(s) | 70, 410 |
| FspBI | CTAG | 4 cut(s) | 152, 402, 413, 497 |
| GlaI | GCGC | 1 cut(s) | 73 |
| GluI | GCNGC | 2 cut(s) | 70, 410 |
| HaeII | RGCGCY | 1 cut(s) | 75 |
| HaeIII | GGCC | 3 cut(s) | 260, 848, 905 |
| HapII | CCGG | 1 cut(s) | 86 |
| HhaI | GCGC | 1 cut(s) | 74 |
| Hin1II | CATG | 6 cut(s) | 33, 433, 445, 514, 656, 832 |
| Hin6I | GCGC | 1 cut(s) | 72 |
| HinP1I | GCGC | 1 cut(s) | 72 |
| HinfI | GANTC | 4 cut(s) | 273, 445, 577, 730 |
| HpaII | CCGG | 1 cut(s) | 86 |
| HphI | GGTGA | 2 cut(s) | 691, 740 |
| Hpy166II | GTNNAC | 2 cut(s) | 181, 378 |
| Hpy188I | TCNGA | 4 cut(s) | 349, 450, 582, 603 |
| Hpy188III | TCNNGA | 1 cut(s) | 329 |
| Hpy8I | GTNNAC | 2 cut(s) | 181, 378 |
| HpyAV | CCTTC | 5 cut(s) | 365, 556, 598, 781, 856 |
| HpyCH4III | ACNGT | 4 cut(s) | 196, 313, 685, 842 |
| HpyCH4V | TGCA | 5 cut(s) | 69, 635, 646, 757, 813 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 902 |
| HpyF3I | CTNAG | 5 cut(s) | 330, 340, 369, 600, 867 |
| Hsp92II | CATG | 6 cut(s) | 33, 433, 445, 514, 656, 832 |
| HspAI | GCGC | 1 cut(s) | 72 |
| Lsp1109I | GCAGC | 2 cut(s) | 81, 396 |
| LweI | GCATC | 3 cut(s) | 91, 105, 905 |
| MaeI | CTAG | 4 cut(s) | 152, 402, 413, 497 |
| MaeIII | GTNAC | 4 cut(s) | 125, 211, 679, 824 |
| MbiI | CCGCTC | 1 cut(s) | 54 |
| MboII | GAAGA | 2 cut(s) | 796, 844 |
| MhlI | GDGCHC | 1 cut(s) | 465 |
| MluCI | AATT | 5 cut(s) | 43, 243, 626, 630, 688 |
| MlyI | GAGTC | 1 cut(s) | 586 |
| MroXI | GAANNNNTTC | 1 cut(s) | 47 |
| MseI | TTAA | 3 cut(s) | 191, 629, 663 |
| MspA1I | CMGCKG | 1 cut(s) | 115 |
| MspCI | CTTAAG | 1 cut(s) | 662 |
| MspI | CCGG | 1 cut(s) | 86 |
| MspR9I | CCNGG | 3 cut(s) | 262, 726, 859 |
| MvaI | CCWGG | 3 cut(s) | 262, 726, 859 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 902 |
| NheI | GCTAGC | 1 cut(s) | 496 |
| NlaIII | CATG | 6 cut(s) | 33, 433, 445, 514, 656, 832 |
| NlaIV | GGNNCC | 3 cut(s) | 322, 617, 882 |
| NmuCI | GTSAC | 2 cut(s) | 679, 824 |
| PceI | AGGCCT | 1 cut(s) | 848 |
| PdmI | GAANNNNTTC | 1 cut(s) | 47 |
| PfeI | GAWTC | 3 cut(s) | 273, 445, 730 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 178 |
| PkrI | GCNGC | 2 cut(s) | 71, 411 |
| PleI | GAGTC | 1 cut(s) | 585 |
| PpsI | GAGTC | 1 cut(s) | 585 |
| PshBI | ATTAAT | 1 cut(s) | 629 |
| Psp6I | CCWGG | 3 cut(s) | 260, 724, 857 |
| PspGI | CCWGG | 3 cut(s) | 260, 724, 857 |
| PspN4I | GGNNCC | 3 cut(s) | 322, 617, 882 |
| PspPI | GGNCC | 1 cut(s) | 258 |
| PvuII | CAGCTG | 1 cut(s) | 115 |
| RsaI | GTAC | 2 cut(s) | 226, 353 |
| RsaNI | GTAC | 2 cut(s) | 225, 352 |
| SaqAI | TTAA | 3 cut(s) | 191, 629, 663 |
| SatI | GCNGC | 2 cut(s) | 70, 410 |
| Sau96I | GGNCC | 1 cut(s) | 258 |
| SchI | GAGTC | 1 cut(s) | 586 |
| ScrFI | CCNGG | 3 cut(s) | 262, 726, 859 |
| SduI | GDGCHC | 1 cut(s) | 465 |
| SfaNI | GCATC | 3 cut(s) | 91, 105, 905 |
| SfcI | CTRYAG | 3 cut(s) | 130, 207, 277 |
| SmlI | CTYRAG | 1 cut(s) | 662 |
| SmoI | CTYRAG | 1 cut(s) | 662 |
| Sse9I | AATT | 5 cut(s) | 43, 243, 626, 630, 688 |
| SseBI | AGGCCT | 1 cut(s) | 848 |
| SsiI | CCGC | 1 cut(s) | 52 |
| SspI | AATATT | 1 cut(s) | 484 |
| SspMI | CTAG | 4 cut(s) | 152, 402, 413, 497 |
| StuI | AGGCCT | 1 cut(s) | 848 |
| StyD4I | CCNGG | 3 cut(s) | 260, 724, 857 |
| StyI | CCWWGG | 2 cut(s) | 738, 900 |
| TaaI | ACNGT | 4 cut(s) | 196, 313, 685, 842 |
| TasI | AATT | 5 cut(s) | 43, 243, 626, 630, 688 |
| TatI | WGTACW | 1 cut(s) | 224 |
| TfiI | GAWTC | 3 cut(s) | 273, 445, 730 |
| Tru1I | TTAA | 3 cut(s) | 191, 629, 663 |
| Tru9I | TTAA | 3 cut(s) | 191, 629, 663 |
| TscAI | CASTG | 1 cut(s) | 318 |
| TseFI | GTSAC | 2 cut(s) | 679, 824 |
| TseI | GCWGC | 2 cut(s) | 69, 409 |
| Tsp45I | GTSAC | 2 cut(s) | 679, 824 |
| TspDTI | ATGAA | 7 cut(s) | 234, 308, 446, 458, 494, 639, 845 |
| TspRI | CASTG | 1 cut(s) | 318 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 178 |
| Vha464I | CTTAAG | 1 cut(s) | 662 |
| VspI | ATTAAT | 1 cut(s) | 629 |
| XapI | RAATTY | 2 cut(s) | 243, 688 |
| XmnI | GAANNNNTTC | 1 cut(s) | 47 |
| XspI | CTAG | 4 cut(s) | 152, 402, 413, 497 |