gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 9 - 117 | 1.8e-11 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 218 |
| AfaI | GTAC | 1 cut(s) | 269 |
| AgsI | TTSAA | 2 cut(s) | 79, 199 |
| Alw21I | GWGCWC | 1 cut(s) | 287 |
| AlwI | GGATC | 1 cut(s) | 218 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 101 |
| Bbv12I | GWGCWC | 1 cut(s) | 287 |
| BfaI | CTAG | 1 cut(s) | 179 |
| BmcAI | AGTACT | 1 cut(s) | 269 |
| BmiI | GGNNCC | 1 cut(s) | 314 |
| BmsI | GCATC | 1 cut(s) | 68 |
| BsaJI | CCNNGG | 1 cut(s) | 45 |
| Bse1I | ACTGG | 1 cut(s) | 106 |
| BseDI | CCNNGG | 1 cut(s) | 45 |
| BseNI | ACTGG | 1 cut(s) | 106 |
| BsiHKAI | GWGCWC | 1 cut(s) | 287 |
| BslFI | GGGAC | 1 cut(s) | 197 |
| BsmFI | GGGAC | 1 cut(s) | 197 |
| BsmI | GAATGC | 3 cut(s) | 24, 46, 205 |
| Bsp1286I | GDGCHC | 1 cut(s) | 287 |
| Bsp143I | GATC | 1 cut(s) | 223 |
| BspHI | TCATGA | 1 cut(s) | 111 |
| BspLI | GGNNCC | 1 cut(s) | 314 |
| BspPI | GGATC | 1 cut(s) | 218 |
| BsrI | ACTGG | 1 cut(s) | 106 |
| BssECI | CCNNGG | 1 cut(s) | 45 |
| BssMI | GATC | 1 cut(s) | 223 |
| BssT1I | CCWWGG | 1 cut(s) | 45 |
| Bst4CI | ACNGT | 1 cut(s) | 13 |
| BstC8I | GCNNGC | 1 cut(s) | 341 |
| BstDEI | CTNAG | 1 cut(s) | 55 |
| BstKTI | GATC | 1 cut(s) | 226 |
| BstMBI | GATC | 1 cut(s) | 223 |
| BtsIMutI | CAGTG | 1 cut(s) | 18 |
| Cac8I | GCNNGC | 1 cut(s) | 341 |
| CaiI | CAGNNNCTG | 1 cut(s) | 101 |
| CciI | TCATGA | 1 cut(s) | 111 |
| Csp6I | GTAC | 1 cut(s) | 268 |
| CviAII | CATG | 3 cut(s) | 112, 239, 344 |
| CviJI | RGCY | 1 cut(s) | 315 |
| CviKI_1 | RGCY | 1 cut(s) | 315 |
| CviQI | GTAC | 1 cut(s) | 268 |
| DdeI | CTNAG | 1 cut(s) | 55 |
| DpnI | GATC | 1 cut(s) | 225 |
| DpnII | GATC | 1 cut(s) | 223 |
| Eco130I | CCWWGG | 1 cut(s) | 45 |
| EcoT14I | CCWWGG | 1 cut(s) | 45 |
| ErhI | CCWWGG | 1 cut(s) | 45 |
| FaeI | CATG | 3 cut(s) | 115, 242, 347 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 38, 70 |
| FaqI | GGGAC | 1 cut(s) | 197 |
| FatI | CATG | 3 cut(s) | 111, 238, 343 |
| FspBI | CTAG | 1 cut(s) | 179 |
| Hin1II | CATG | 3 cut(s) | 115, 242, 347 |
| HinfI | GANTC | 1 cut(s) | 32 |
| Hpy188I | TCNGA | 2 cut(s) | 7, 37 |
| Hpy188III | TCNNGA | 2 cut(s) | 29, 112 |
| HpyCH4III | ACNGT | 1 cut(s) | 13 |
| HpyCH4V | TGCA | 3 cut(s) | 296, 332, 343 |
| HpyF3I | CTNAG | 1 cut(s) | 55 |
| Hsp92II | CATG | 3 cut(s) | 115, 242, 347 |
| Kzo9I | GATC | 1 cut(s) | 223 |
| LmnI | GCTCC | 1 cut(s) | 312 |
| LpnPI | CCDG | 2 cut(s) | 42, 87 |
| LweI | GCATC | 1 cut(s) | 68 |
| MaeI | CTAG | 1 cut(s) | 179 |
| MalI | GATC | 1 cut(s) | 225 |
| MboI | GATC | 1 cut(s) | 223 |
| MhlI | GDGCHC | 1 cut(s) | 287 |
| MluCI | AATT | 6 cut(s) | 83, 173, 194, 275, 327, 333 |
| MnlI | CCTC | 5 cut(s) | 11, 150, 215, 326, 340 |
| MseI | TTAA | 2 cut(s) | 249, 278 |
| Mva1269I | GAATGC | 3 cut(s) | 24, 46, 205 |
| NdeII | GATC | 1 cut(s) | 223 |
| NlaIII | CATG | 3 cut(s) | 115, 242, 347 |
| NlaIV | GGNNCC | 1 cut(s) | 314 |
| PagI | TCATGA | 1 cut(s) | 111 |
| PctI | GAATGC | 3 cut(s) | 24, 46, 205 |
| PfeI | GAWTC | 1 cut(s) | 32 |
| PspN4I | GGNNCC | 1 cut(s) | 314 |
| PstNI | CAGNNNCTG | 1 cut(s) | 101 |
| RsaI | GTAC | 1 cut(s) | 269 |
| RsaNI | GTAC | 1 cut(s) | 268 |
| SaqAI | TTAA | 2 cut(s) | 249, 278 |
| Sau3AI | GATC | 1 cut(s) | 223 |
| ScaI | AGTACT | 1 cut(s) | 269 |
| SduI | GDGCHC | 1 cut(s) | 287 |
| SetI | ASST | 3 cut(s) | 22, 137, 151 |
| SfaNI | GCATC | 1 cut(s) | 68 |
| SgeI | CNNG | 8 cut(s) | 41, 49, 58, 82, 114, 124, 191, 251 |
| Sse9I | AATT | 6 cut(s) | 83, 173, 194, 275, 327, 333 |
| SspMI | CTAG | 1 cut(s) | 179 |
| StyI | CCWWGG | 1 cut(s) | 45 |
| TaaI | ACNGT | 1 cut(s) | 13 |
| TasI | AATT | 6 cut(s) | 83, 173, 194, 275, 327, 333 |
| TatI | WGTACW | 1 cut(s) | 267 |
| TfiI | GAWTC | 1 cut(s) | 32 |
| Tru1I | TTAA | 2 cut(s) | 249, 278 |
| Tru9I | TTAA | 2 cut(s) | 249, 278 |
| TscAI | CASTG | 1 cut(s) | 18 |
| TspDTI | ATGAA | 4 cut(s) | 128, 132, 227, 336 |
| TspRI | CASTG | 1 cut(s) | 18 |
| XspI | CTAG | 1 cut(s) | 179 |
| ZrmI | AGTACT | 1 cut(s) | 269 |