gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 24 - 128 | 1.7e-10 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 471 |
| Acc36I | ACCTGC | 1 cut(s) | 471 |
| AccB1I | GGYRCC | 1 cut(s) | 29 |
| AcsI | RAATTY | 1 cut(s) | 397 |
| AcuI | CTGAAG | 1 cut(s) | 39 |
| AfaI | GTAC | 1 cut(s) | 62 |
| AflII | CTTAAG | 1 cut(s) | 371 |
| AgsI | TTSAA | 4 cut(s) | 68, 197, 259, 508 |
| AluBI | AGCT | 4 cut(s) | 53, 77, 205, 250 |
| AluI | AGCT | 4 cut(s) | 53, 77, 205, 250 |
| Alw21I | GWGCWC | 1 cut(s) | 174 |
| Alw26I | GTCTC | 1 cut(s) | 541 |
| ApeKI | GCWGC | 1 cut(s) | 118 |
| ApoI | RAATTY | 1 cut(s) | 397 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 382, 414 |
| AseI | ATTAAT | 1 cut(s) | 338 |
| AsuHPI | GGTGA | 1 cut(s) | 400 |
| AsuNHI | GCTAGC | 1 cut(s) | 205 |
| BanI | GGYRCC | 1 cut(s) | 29 |
| Bbv12I | GWGCWC | 1 cut(s) | 174 |
| BbvI | GCAGC | 1 cut(s) | 105 |
| BcoDI | GTCTC | 1 cut(s) | 541 |
| BfaI | CTAG | 3 cut(s) | 111, 122, 206 |
| BfrI | CTTAAG | 1 cut(s) | 371 |
| BfuAI | ACCTGC | 1 cut(s) | 471 |
| BisI | GCNGC | 1 cut(s) | 119 |
| BlsI | GCNGC | 1 cut(s) | 120 |
| BmiI | GGNNCC | 2 cut(s) | 31, 326 |
| BmtI | GCTAGC | 1 cut(s) | 209 |
| Bpu10I | CCTNAGC | 1 cut(s) | 49 |
| BseMII | CTCAG | 4 cut(s) | 30, 69, 323, 428 |
| BseXI | GCAGC | 1 cut(s) | 105 |
| BshNI | GGYRCC | 1 cut(s) | 29 |
| BsiHKAI | GWGCWC | 1 cut(s) | 174 |
| BsmAI | GTCTC | 1 cut(s) | 541 |
| Bsp1286I | GDGCHC | 1 cut(s) | 174 |
| BspCNI | CTCAG | 4 cut(s) | 31, 70, 322, 427 |
| BspLI | GGNNCC | 2 cut(s) | 31, 326 |
| BspMI | ACCTGC | 1 cut(s) | 471 |
| BspOI | GCTAGC | 1 cut(s) | 209 |
| BspT107I | GGYRCC | 1 cut(s) | 29 |
| BspTI | CTTAAG | 1 cut(s) | 371 |
| Bst4CI | ACNGT | 3 cut(s) | 22, 394, 552 |
| Bst6I | CTCTTC | 1 cut(s) | 537 |
| BstAFI | CTTAAG | 1 cut(s) | 371 |
| BstC8I | GCNNGC | 2 cut(s) | 207, 252 |
| BstDEI | CTNAG | 6 cut(s) | 39, 49, 78, 309, 414, 447 |
| BstMAI | GTCTC | 1 cut(s) | 541 |
| BstV1I | GCAGC | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 2 cut(s) | 27, 422 |
| BveI | ACCTGC | 1 cut(s) | 471 |
| Cac8I | GCNNGC | 2 cut(s) | 207, 252 |
| Csp6I | GTAC | 1 cut(s) | 61 |
| CviAII | CATG | 5 cut(s) | 139, 151, 220, 362, 539 |
| CviJI | RGCY | 9 cut(s) | 47, 53, 77, 110, 205, 209, 250, 370, 504 |
| CviKI_1 | RGCY | 9 cut(s) | 47, 53, 77, 110, 205, 209, 250, 370, 504 |
| CviQI | GTAC | 1 cut(s) | 61 |
| DdeI | CTNAG | 6 cut(s) | 39, 49, 78, 309, 414, 447 |
| Eam1104I | CTCTTC | 1 cut(s) | 537 |
| EarI | CTCTTC | 1 cut(s) | 537 |
| Eco57I | CTGAAG | 1 cut(s) | 39 |
| FaeI | CATG | 5 cut(s) | 142, 154, 223, 365, 542 |
| FatI | CATG | 5 cut(s) | 138, 150, 219, 361, 538 |
| Fnu4HI | GCNGC | 1 cut(s) | 119 |
| Fsp4HI | GCNGC | 1 cut(s) | 119 |
| FspBI | CTAG | 3 cut(s) | 111, 122, 206 |
| GluI | GCNGC | 1 cut(s) | 119 |
| Hin1II | CATG | 5 cut(s) | 142, 154, 223, 365, 542 |
| HinfI | GANTC | 3 cut(s) | 154, 286, 439 |
| HphI | GGTGA | 1 cut(s) | 400 |
| Hpy166II | GTNNAC | 1 cut(s) | 87 |
| Hpy188I | TCNGA | 5 cut(s) | 16, 58, 159, 291, 312 |
| Hpy188III | TCNNGA | 1 cut(s) | 38 |
| Hpy8I | GTNNAC | 1 cut(s) | 87 |
| HpyAV | CCTTC | 2 cut(s) | 74, 307 |
| HpyCH4III | ACNGT | 3 cut(s) | 22, 394, 552 |
| HpyCH4V | TGCA | 4 cut(s) | 344, 355, 466, 523 |
| HpyF3I | CTNAG | 6 cut(s) | 39, 49, 78, 309, 414, 447 |
| Hsp92II | CATG | 5 cut(s) | 142, 154, 223, 365, 542 |
| LpnPI | CCDG | 8 cut(s) | 51, 148, 278, 282, 420, 476, 489, 497 |
| Lsp1109I | GCAGC | 1 cut(s) | 105 |
| MaeI | CTAG | 3 cut(s) | 111, 122, 206 |
| MaeIII | GTNAC | 2 cut(s) | 388, 534 |
| MboII | GAAGA | 2 cut(s) | 505, 554 |
| MhlI | GDGCHC | 1 cut(s) | 174 |
| MluCI | AATT | 3 cut(s) | 335, 339, 397 |
| MlyI | GAGTC | 1 cut(s) | 295 |
| MnlI | CCTC | 7 cut(s) | 18, 100, 226, 360, 379, 423, 524 |
| MseI | TTAA | 2 cut(s) | 338, 372 |
| MspCI | CTTAAG | 1 cut(s) | 371 |
| NheI | GCTAGC | 1 cut(s) | 205 |
| NlaIII | CATG | 5 cut(s) | 142, 154, 223, 365, 542 |
| NlaIV | GGNNCC | 2 cut(s) | 31, 326 |
| NmuCI | GTSAC | 2 cut(s) | 388, 534 |
| PaqCI | CACCTGC | 1 cut(s) | 471 |
| PfeI | GAWTC | 2 cut(s) | 154, 439 |
| PkrI | GCNGC | 1 cut(s) | 120 |
| PleI | GAGTC | 1 cut(s) | 294 |
| PpsI | GAGTC | 1 cut(s) | 294 |
| PshBI | ATTAAT | 1 cut(s) | 338 |
| PspN4I | GGNNCC | 2 cut(s) | 31, 326 |
| RsaI | GTAC | 1 cut(s) | 62 |
| RsaNI | GTAC | 1 cut(s) | 61 |
| SaqAI | TTAA | 2 cut(s) | 338, 372 |
| SatI | GCNGC | 1 cut(s) | 119 |
| SchI | GAGTC | 1 cut(s) | 295 |
| SduI | GDGCHC | 1 cut(s) | 174 |
| SmlI | CTYRAG | 1 cut(s) | 371 |
| SmoI | CTYRAG | 1 cut(s) | 371 |
| Sse9I | AATT | 3 cut(s) | 335, 339, 397 |
| SspI | AATATT | 1 cut(s) | 193 |
| SspMI | CTAG | 3 cut(s) | 111, 122, 206 |
| TaaI | ACNGT | 3 cut(s) | 22, 394, 552 |
| TasI | AATT | 3 cut(s) | 335, 339, 397 |
| TfiI | GAWTC | 2 cut(s) | 154, 439 |
| Tru1I | TTAA | 2 cut(s) | 338, 372 |
| Tru9I | TTAA | 2 cut(s) | 338, 372 |
| TscAI | CASTG | 2 cut(s) | 27, 422 |
| TseFI | GTSAC | 2 cut(s) | 388, 534 |
| TseI | GCWGC | 1 cut(s) | 118 |
| Tsp45I | GTSAC | 2 cut(s) | 388, 534 |
| TspDTI | ATGAA | 6 cut(s) | 17, 155, 167, 203, 348, 555 |
| TspRI | CASTG | 2 cut(s) | 27, 422 |
| Vha464I | CTTAAG | 1 cut(s) | 371 |
| VspI | ATTAAT | 1 cut(s) | 338 |
| XapI | RAATTY | 1 cut(s) | 397 |
| XspI | CTAG | 3 cut(s) | 111, 122, 206 |