gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 9 - 97 | 1.5e-08 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 441 |
| AciI | CCGC | 1 cut(s) | 321 |
| AclWI | GGATC | 2 cut(s) | 312, 325 |
| AcsI | RAATTY | 1 cut(s) | 119 |
| AcuI | CTGAAG | 2 cut(s) | 57, 117 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 327 |
| AflII | CTTAAG | 1 cut(s) | 131 |
| AgsI | TTSAA | 1 cut(s) | 187 |
| AluBI | AGCT | 2 cut(s) | 130, 196 |
| AluI | AGCT | 2 cut(s) | 130, 196 |
| Alw21I | GWGCWC | 1 cut(s) | 165 |
| Alw26I | GTCTC | 1 cut(s) | 195 |
| AlwI | GGATC | 2 cut(s) | 312, 325 |
| ApeKI | GCWGC | 1 cut(s) | 59 |
| ApoI | RAATTY | 1 cut(s) | 119 |
| AspS9I | GGNCC | 1 cut(s) | 334 |
| AvaII | GGWCC | 1 cut(s) | 334 |
| BaeGI | GKGCMC | 1 cut(s) | 497 |
| BamHI | GGATCC | 1 cut(s) | 317 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 457, 489 |
| Bbv12I | GWGCWC | 1 cut(s) | 165 |
| BbvI | GCAGC | 1 cut(s) | 46 |
| BccI | CCATC | 4 cut(s) | 134, 205, 345, 415 |
| BcoDI | GTCTC | 1 cut(s) | 195 |
| BfaI | CTAG | 1 cut(s) | 105 |
| BfmI | CTRYAG | 2 cut(s) | 344, 434 |
| BfrI | CTTAAG | 1 cut(s) | 131 |
| BfuAI | ACCTGC | 1 cut(s) | 441 |
| BisI | GCNGC | 1 cut(s) | 60 |
| BlsI | GCNGC | 1 cut(s) | 61 |
| Bme18I | GGWCC | 1 cut(s) | 334 |
| BmgT120I | GGNCC | 1 cut(s) | 334 |
| BmiI | GGNNCC | 2 cut(s) | 33, 319 |
| BmsI | GCATC | 2 cut(s) | 31, 214 |
| BpuEI | CTTGAG | 1 cut(s) | 226 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 327 |
| Bse3DI | GCAATG | 1 cut(s) | 330 |
| BseGI | GGATG | 3 cut(s) | 216, 309, 337 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 327 |
| BseMI | GCAATG | 1 cut(s) | 330 |
| BseMII | CTCAG | 2 cut(s) | 211, 292 |
| BseRI | GAGGAG | 2 cut(s) | 44, 322 |
| BseSI | GKGCMC | 1 cut(s) | 497 |
| BseXI | GCAGC | 1 cut(s) | 46 |
| BseYI | CCCAGC | 1 cut(s) | 259 |
| BsiHKAI | GWGCWC | 1 cut(s) | 165 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 327 |
| BsmAI | GTCTC | 1 cut(s) | 195 |
| Bsp1286I | GDGCHC | 2 cut(s) | 165, 497 |
| Bsp143I | GATC | 2 cut(s) | 317, 488 |
| BspACI | CCGC | 1 cut(s) | 321 |
| BspCNI | CTCAG | 2 cut(s) | 210, 291 |
| BspLI | GGNNCC | 2 cut(s) | 33, 319 |
| BspMAI | CTGCAG | 2 cut(s) | 348, 438 |
| BspMI | ACCTGC | 1 cut(s) | 441 |
| BspPI | GGATC | 2 cut(s) | 312, 325 |
| BspTI | CTTAAG | 1 cut(s) | 131 |
| BsrDI | GCAATG | 1 cut(s) | 330 |
| BssMI | GATC | 2 cut(s) | 317, 488 |
| BstAFI | CTTAAG | 1 cut(s) | 131 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 169 |
| BstDEI | CTNAG | 3 cut(s) | 6, 197, 278 |
| BstF5I | GGATG | 3 cut(s) | 216, 309, 337 |
| BstKTI | GATC | 2 cut(s) | 320, 491 |
| BstMAI | GTCTC | 1 cut(s) | 195 |
| BstMBI | GATC | 2 cut(s) | 317, 488 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 65, 101, 169 |
| BstSFI | CTRYAG | 2 cut(s) | 344, 434 |
| BstSLI | GKGCMC | 1 cut(s) | 497 |
| BstV1I | GCAGC | 1 cut(s) | 46 |
| BstX2I | RGATCY | 1 cut(s) | 317 |
| BstYI | RGATCY | 1 cut(s) | 317 |
| BtsCI | GGATG | 3 cut(s) | 216, 309, 337 |
| BtsI | GCAGTG | 2 cut(s) | 157, 341 |
| BtsIMutI | CAGTG | 2 cut(s) | 157, 341 |
| BveI | ACCTGC | 1 cut(s) | 441 |
| Cfr13I | GGNCC | 1 cut(s) | 334 |
| CviAII | CATG | 4 cut(s) | 125, 169, 239, 498 |
| CviJI | RGCY | 9 cut(s) | 34, 59, 95, 130, 196, 245, 263, 331, 366 |
| CviKI_1 | RGCY | 9 cut(s) | 34, 59, 95, 130, 196, 245, 263, 331, 366 |
| DdeI | CTNAG | 3 cut(s) | 6, 197, 278 |
| DpnI | GATC | 2 cut(s) | 319, 490 |
| DpnII | GATC | 2 cut(s) | 317, 488 |
| Eco47I | GGWCC | 1 cut(s) | 334 |
| Eco57I | CTGAAG | 2 cut(s) | 57, 117 |
| EcoRI | GAATTC | 1 cut(s) | 119 |
| EcoT22I | ATGCAT | 1 cut(s) | 174 |
| FaeI | CATG | 4 cut(s) | 128, 172, 242, 501 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 460, 492 |
| FatI | CATG | 4 cut(s) | 124, 168, 238, 497 |
| Fnu4HI | GCNGC | 1 cut(s) | 60 |
| FokI | GGATG | 3 cut(s) | 223, 316, 324 |
| Fsp4HI | GCNGC | 1 cut(s) | 60 |
| FspBI | CTAG | 1 cut(s) | 105 |
| GluI | GCNGC | 1 cut(s) | 60 |
| GsaI | CCCAGC | 1 cut(s) | 263 |
| Hin1II | CATG | 4 cut(s) | 128, 172, 242, 501 |
| HincII | GTYRAC | 1 cut(s) | 351 |
| HindII | GTYRAC | 1 cut(s) | 351 |
| Hpy166II | GTNNAC | 1 cut(s) | 351 |
| Hpy188I | TCNGA | 3 cut(s) | 7, 200, 223 |
| Hpy188III | TCNNGA | 1 cut(s) | 280 |
| Hpy8I | GTNNAC | 1 cut(s) | 351 |
| HpyAV | CCTTC | 2 cut(s) | 85, 92 |
| HpyCH4V | TGCA | 8 cut(s) | 62, 68, 112, 172, 227, 238, 346, 436 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 65, 101, 169 |
| HpyF3I | CTNAG | 3 cut(s) | 6, 197, 278 |
| Hsp92II | CATG | 4 cut(s) | 128, 172, 242, 501 |
| Kzo9I | GATC | 2 cut(s) | 317, 488 |
| LmnI | GCTCC | 2 cut(s) | 31, 160 |
| LpnPI | CCDG | 7 cut(s) | 48, 260, 265, 273, 317, 410, 446 |
| Lsp1109I | GCAGC | 1 cut(s) | 46 |
| LweI | GCATC | 2 cut(s) | 31, 214 |
| MaeI | CTAG | 1 cut(s) | 105 |
| MaeIII | GTNAC | 1 cut(s) | 448 |
| MalI | GATC | 2 cut(s) | 319, 490 |
| MboI | GATC | 2 cut(s) | 317, 488 |
| MboII | GAAGA | 5 cut(s) | 50, 387, 390, 393, 468 |
| MfeI | CAATTG | 1 cut(s) | 63 |
| MflI | RGATCY | 1 cut(s) | 317 |
| MhlI | GDGCHC | 2 cut(s) | 165, 497 |
| MluCI | AATT | 4 cut(s) | 63, 119, 231, 411 |
| MnlI | CCTC | 7 cut(s) | 11, 22, 73, 201, 274, 300, 321 |
| Mph1103I | ATGCAT | 1 cut(s) | 174 |
| MseI | TTAA | 4 cut(s) | 132, 398, 416, 461 |
| MspCI | CTTAAG | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 63 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 65, 101, 169 |
| NdeII | GATC | 2 cut(s) | 317, 488 |
| NlaIII | CATG | 4 cut(s) | 128, 172, 242, 501 |
| NlaIV | GGNNCC | 2 cut(s) | 33, 319 |
| NmuCI | GTSAC | 1 cut(s) | 448 |
| NsiI | ATGCAT | 1 cut(s) | 174 |
| PkrI | GCNGC | 1 cut(s) | 61 |
| PspFI | CCCAGC | 1 cut(s) | 259 |
| PspN4I | GGNNCC | 2 cut(s) | 33, 319 |
| PspPI | GGNCC | 1 cut(s) | 334 |
| PstI | CTGCAG | 2 cut(s) | 348, 438 |
| PsuI | RGATCY | 1 cut(s) | 317 |
| SaqAI | TTAA | 4 cut(s) | 132, 398, 416, 461 |
| SatI | GCNGC | 1 cut(s) | 60 |
| Sau3AI | GATC | 2 cut(s) | 317, 488 |
| Sau96I | GGNCC | 1 cut(s) | 334 |
| SduI | GDGCHC | 2 cut(s) | 165, 497 |
| SetI | ASST | 8 cut(s) | 103, 132, 180, 198, 290, 398, 422, 435 |
| SfaNI | GCATC | 2 cut(s) | 31, 214 |
| SfcI | CTRYAG | 2 cut(s) | 344, 434 |
| SinI | GGWCC | 1 cut(s) | 334 |
| SmlI | CTYRAG | 2 cut(s) | 131, 205 |
| SmoI | CTYRAG | 2 cut(s) | 131, 205 |
| Sse9I | AATT | 4 cut(s) | 63, 119, 231, 411 |
| SsiI | CCGC | 1 cut(s) | 321 |
| SspMI | CTAG | 1 cut(s) | 105 |
| TasI | AATT | 4 cut(s) | 63, 119, 231, 411 |
| Tru1I | TTAA | 4 cut(s) | 132, 398, 416, 461 |
| Tru9I | TTAA | 4 cut(s) | 132, 398, 416, 461 |
| TscAI | CASTG | 2 cut(s) | 157, 348 |
| TseFI | GTSAC | 1 cut(s) | 448 |
| TseI | GCWGC | 1 cut(s) | 59 |
| Tsp45I | GTSAC | 1 cut(s) | 448 |
| TspDTI | ATGAA | 1 cut(s) | 255 |
| TspRI | CASTG | 2 cut(s) | 157, 348 |
| Vha464I | CTTAAG | 1 cut(s) | 131 |
| VpaK11BI | GGWCC | 1 cut(s) | 334 |
| XapI | RAATTY | 1 cut(s) | 119 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 52 |
| XspI | CTAG | 1 cut(s) | 105 |
| Zsp2I | ATGCAT | 1 cut(s) | 174 |