gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 68 - 225 | 7.4e-18 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 50 |
| AciI | CCGC | 1 cut(s) | 231 |
| AclWI | GGATC | 3 cut(s) | 142, 206, 219 |
| AcsI | RAATTY | 3 cut(s) | 180, 339, 754 |
| AfaI | GTAC | 4 cut(s) | 392, 479, 657, 675 |
| AjnI | CCWGG | 1 cut(s) | 174 |
| AluBI | AGCT | 1 cut(s) | 410 |
| AluI | AGCT | 1 cut(s) | 410 |
| Alw26I | GTCTC | 5 cut(s) | 153, 242, 407, 605, 659 |
| AlwI | GGATC | 3 cut(s) | 142, 206, 219 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 350 |
| AoxI | GGCC | 3 cut(s) | 291, 517, 690 |
| ApeKI | GCWGC | 1 cut(s) | 86 |
| ApoI | RAATTY | 3 cut(s) | 180, 339, 754 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 854 |
| AsuHPI | GGTGA | 1 cut(s) | 802 |
| BamHI | GGATCC | 1 cut(s) | 211 |
| BbvI | GCAGC | 1 cut(s) | 98 |
| BccI | CCATC | 1 cut(s) | 890 |
| BciT130I | CCWGG | 1 cut(s) | 176 |
| BclI | TGATCA | 2 cut(s) | 193, 438 |
| BcoDI | GTCTC | 5 cut(s) | 153, 242, 407, 605, 659 |
| BfmI | CTRYAG | 1 cut(s) | 266 |
| BisI | GCNGC | 2 cut(s) | 87, 231 |
| BlsI | GCNGC | 2 cut(s) | 88, 232 |
| Bme1390I | CCNGG | 1 cut(s) | 176 |
| BmiI | GGNNCC | 2 cut(s) | 213, 225 |
| BmrFI | CCNGG | 1 cut(s) | 176 |
| BmsI | GCATC | 4 cut(s) | 117, 313, 477, 842 |
| Bpu10I | CCTNAGC | 1 cut(s) | 203 |
| BpuEI | CTTGAG | 2 cut(s) | 578, 662 |
| BsaJI | CCNNGG | 2 cut(s) | 175, 813 |
| Bse1I | ACTGG | 1 cut(s) | 421 |
| Bse3DI | GCAATG | 1 cut(s) | 378 |
| BseBI | CCWGG | 1 cut(s) | 176 |
| BseDI | CCNNGG | 2 cut(s) | 175, 813 |
| BseMI | GCAATG | 1 cut(s) | 378 |
| BseMII | CTCAG | 4 cut(s) | 402, 495, 626, 660 |
| BseNI | ACTGG | 1 cut(s) | 421 |
| BseRI | GAGGAG | 1 cut(s) | 677 |
| BseXI | GCAGC | 1 cut(s) | 98 |
| BshFI | GGCC | 3 cut(s) | 293, 519, 692 |
| BsmAI | GTCTC | 5 cut(s) | 153, 242, 407, 605, 659 |
| BsnI | GGCC | 3 cut(s) | 293, 519, 692 |
| Bsp1407I | TGTACA | 1 cut(s) | 655 |
| Bsp143I | GATC | 5 cut(s) | 134, 193, 211, 297, 438 |
| BspACI | CCGC | 1 cut(s) | 231 |
| BspANI | GGCC | 3 cut(s) | 293, 519, 692 |
| BspCNI | CTCAG | 4 cut(s) | 403, 496, 625, 661 |
| BspLI | GGNNCC | 2 cut(s) | 213, 225 |
| BspPI | GGATC | 3 cut(s) | 142, 206, 219 |
| BsrDI | GCAATG | 1 cut(s) | 378 |
| BsrGI | TGTACA | 1 cut(s) | 655 |
| BsrI | ACTGG | 1 cut(s) | 421 |
| BssECI | CCNNGG | 2 cut(s) | 175, 813 |
| BssMI | GATC | 5 cut(s) | 134, 193, 211, 297, 438 |
| BssNAI | GTATAC | 1 cut(s) | 51 |
| BssT1I | CCWWGG | 1 cut(s) | 813 |
| Bst1107I | GTATAC | 1 cut(s) | 51 |
| Bst2UI | CCWGG | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 3 cut(s) | 270, 532, 893 |
| BstAUI | TGTACA | 1 cut(s) | 655 |
| BstC8I | GCNNGC | 2 cut(s) | 228, 241 |
| BstDEI | CTNAG | 7 cut(s) | 203, 252, 411, 504, 612, 669, 786 |
| BstKTI | GATC | 5 cut(s) | 137, 196, 214, 300, 441 |
| BstMAI | GTCTC | 5 cut(s) | 153, 242, 407, 605, 659 |
| BstMBI | GATC | 5 cut(s) | 134, 193, 211, 297, 438 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 236, 861 |
| BstNI | CCWGG | 1 cut(s) | 176 |
| BstSCI | CCNGG | 1 cut(s) | 174 |
| BstSFI | CTRYAG | 1 cut(s) | 266 |
| BstV1I | GCAGC | 1 cut(s) | 98 |
| BstX2I | RGATCY | 1 cut(s) | 211 |
| BstYI | RGATCY | 1 cut(s) | 211 |
| BstZ17I | GTATAC | 1 cut(s) | 51 |
| BsuRI | GGCC | 3 cut(s) | 293, 519, 692 |
| BtgZI | GCGATG | 1 cut(s) | 819 |
| BtsI | GCAGTG | 4 cut(s) | 89, 333, 498, 569 |
| BtsIMutI | CAGTG | 5 cut(s) | 89, 275, 333, 498, 569 |
| Cac8I | GCNNGC | 2 cut(s) | 228, 241 |
| CaiI | CAGNNNCTG | 1 cut(s) | 350 |
| Csp6I | GTAC | 4 cut(s) | 391, 478, 656, 674 |
| CviAII | CATG | 4 cut(s) | 197, 304, 316, 709 |
| CviJI | RGCY | 8 cut(s) | 226, 230, 293, 410, 519, 692, 900, 913 |
| CviKI_1 | RGCY | 8 cut(s) | 226, 230, 293, 410, 519, 692, 900, 913 |
| CviQI | GTAC | 4 cut(s) | 391, 478, 656, 674 |
| DdeI | CTNAG | 7 cut(s) | 203, 252, 411, 504, 612, 669, 786 |
| DpnI | GATC | 5 cut(s) | 136, 195, 213, 299, 440 |
| DpnII | GATC | 5 cut(s) | 134, 193, 211, 297, 438 |
| Eco130I | CCWWGG | 1 cut(s) | 813 |
| Eco147I | AGGCCT | 1 cut(s) | 519 |
| EcoRI | GAATTC | 1 cut(s) | 339 |
| EcoRII | CCWGG | 1 cut(s) | 174 |
| EcoT14I | CCWWGG | 1 cut(s) | 813 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 835 |
| ErhI | CCWWGG | 1 cut(s) | 813 |
| FaeI | CATG | 4 cut(s) | 200, 307, 319, 712 |
| FatI | CATG | 4 cut(s) | 196, 303, 315, 708 |
| FauNDI | CATATG | 1 cut(s) | 650 |
| FbaI | TGATCA | 2 cut(s) | 193, 438 |
| FblI | GTMKAC | 1 cut(s) | 50 |
| Fnu4HI | GCNGC | 2 cut(s) | 87, 231 |
| Fsp4HI | GCNGC | 2 cut(s) | 87, 231 |
| GluI | GCNGC | 2 cut(s) | 87, 231 |
| HaeIII | GGCC | 3 cut(s) | 293, 519, 692 |
| Hin1II | CATG | 4 cut(s) | 200, 307, 319, 712 |
| HinfI | GANTC | 3 cut(s) | 347, 598, 628 |
| HphI | GGTGA | 1 cut(s) | 802 |
| Hpy166II | GTNNAC | 2 cut(s) | 51, 656 |
| Hpy188I | TCNGA | 4 cut(s) | 352, 426, 615, 805 |
| Hpy188III | TCNNGA | 9 cut(s) | 344, 442, 595, 632, 679, 759, 883, 904, 934 |
| Hpy8I | GTNNAC | 2 cut(s) | 51, 656 |
| HpyAV | CCTTC | 5 cut(s) | 148, 325, 610, 880, 946 |
| HpyCH4III | ACNGT | 3 cut(s) | 270, 532, 893 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 236, 861 |
| HpyF3I | CTNAG | 7 cut(s) | 203, 252, 411, 504, 612, 669, 786 |
| Hsp92II | CATG | 4 cut(s) | 200, 307, 319, 712 |
| Ksp22I | TGATCA | 2 cut(s) | 193, 438 |
| Kzo9I | GATC | 5 cut(s) | 134, 193, 211, 297, 438 |
| LmnI | GCTCC | 1 cut(s) | 223 |
| Lsp1109I | GCAGC | 1 cut(s) | 98 |
| LweI | GCATC | 4 cut(s) | 117, 313, 477, 842 |
| MaeIII | GTNAC | 2 cut(s) | 113, 526 |
| MalI | GATC | 5 cut(s) | 136, 195, 213, 299, 440 |
| MboI | GATC | 5 cut(s) | 134, 193, 211, 297, 438 |
| MboII | GAAGA | 2 cut(s) | 319, 548 |
| MflI | RGATCY | 1 cut(s) | 211 |
| MluCI | AATT | 9 cut(s) | 13, 28, 122, 167, 180, 339, 434, 754, 907 |
| MlyI | GAGTC | 2 cut(s) | 607, 637 |
| MmeI | TCCRAC | 1 cut(s) | 853 |
| MnlI | CCTC | 6 cut(s) | 202, 329, 441, 655, 664, 675 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 835 |
| MroXI | GAANNNNTTC | 1 cut(s) | 854 |
| MseI | TTAA | 3 cut(s) | 38, 564, 747 |
| MspR9I | CCNGG | 1 cut(s) | 176 |
| MvaI | CCWGG | 1 cut(s) | 176 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 236, 861 |
| NdeI | CATATG | 1 cut(s) | 650 |
| NdeII | GATC | 5 cut(s) | 134, 193, 211, 297, 438 |
| NlaIII | CATG | 4 cut(s) | 200, 307, 319, 712 |
| NlaIV | GGNNCC | 2 cut(s) | 213, 225 |
| NmuCI | GTSAC | 1 cut(s) | 526 |
| NsiI | ATGCAT | 2 cut(s) | 6, 835 |
| PceI | AGGCCT | 1 cut(s) | 519 |
| PdmI | GAANNNNTTC | 1 cut(s) | 854 |
| PfeI | GAWTC | 1 cut(s) | 347 |
| PkrI | GCNGC | 2 cut(s) | 88, 232 |
| PleI | GAGTC | 2 cut(s) | 606, 636 |
| PpsI | GAGTC | 2 cut(s) | 606, 636 |
| Psp6I | CCWGG | 1 cut(s) | 174 |
| PspGI | CCWGG | 1 cut(s) | 174 |
| PspN4I | GGNNCC | 2 cut(s) | 213, 225 |
| PstNI | CAGNNNCTG | 1 cut(s) | 350 |
| PsuI | RGATCY | 1 cut(s) | 211 |
| RsaI | GTAC | 4 cut(s) | 392, 479, 657, 675 |
| RsaNI | GTAC | 4 cut(s) | 391, 478, 656, 674 |
| SaqAI | TTAA | 3 cut(s) | 38, 564, 747 |
| SatI | GCNGC | 2 cut(s) | 87, 231 |
| Sau3AI | GATC | 5 cut(s) | 134, 193, 211, 297, 438 |
| SchI | GAGTC | 2 cut(s) | 607, 637 |
| ScrFI | CCNGG | 1 cut(s) | 176 |
| SetI | ASST | 5 cut(s) | 177, 399, 412, 452, 675 |
| SfaNI | GCATC | 4 cut(s) | 117, 313, 477, 842 |
| SfcI | CTRYAG | 1 cut(s) | 266 |
| SmlI | CTYRAG | 2 cut(s) | 593, 677 |
| SmoI | CTYRAG | 2 cut(s) | 593, 677 |
| Sse9I | AATT | 9 cut(s) | 13, 28, 122, 167, 180, 339, 434, 754, 907 |
| SseBI | AGGCCT | 1 cut(s) | 519 |
| SsiI | CCGC | 1 cut(s) | 231 |
| StuI | AGGCCT | 1 cut(s) | 519 |
| StyD4I | CCNGG | 1 cut(s) | 174 |
| StyI | CCWWGG | 1 cut(s) | 813 |
| TaaI | ACNGT | 3 cut(s) | 270, 532, 893 |
| TasI | AATT | 9 cut(s) | 13, 28, 122, 167, 180, 339, 434, 754, 907 |
| TatI | WGTACW | 3 cut(s) | 390, 477, 655 |
| TauI | GCSGC | 1 cut(s) | 233 |
| TfiI | GAWTC | 1 cut(s) | 347 |
| Tru1I | TTAA | 3 cut(s) | 38, 564, 747 |
| Tru9I | TTAA | 3 cut(s) | 38, 564, 747 |
| TscAI | CASTG | 5 cut(s) | 96, 275, 333, 505, 576 |
| TseFI | GTSAC | 1 cut(s) | 526 |
| TseI | GCWGC | 1 cut(s) | 86 |
| Tsp45I | GTSAC | 1 cut(s) | 526 |
| TspDTI | ATGAA | 5 cut(s) | 320, 443, 651, 737, 771 |
| TspRI | CASTG | 5 cut(s) | 96, 275, 333, 505, 576 |
| XapI | RAATTY | 3 cut(s) | 180, 339, 754 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 706 |
| XmiI | GTMKAC | 1 cut(s) | 50 |
| XmnI | GAANNNNTTC | 1 cut(s) | 854 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 835 |