gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 56 - 201 | 1.8e-20 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 747 |
| Acc36I | ACCTGC | 1 cut(s) | 151 |
| AccB1I | GGYRCC | 1 cut(s) | 158 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 56 |
| AclWI | GGATC | 1 cut(s) | 120 |
| AcsI | RAATTY | 2 cut(s) | 16, 314 |
| AcuI | CTGAAG | 3 cut(s) | 392, 431, 458 |
| AdeI | CACNNNGTG | 1 cut(s) | 131 |
| AfaI | GTAC | 1 cut(s) | 535 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 56 |
| AgsI | TTSAA | 5 cut(s) | 70, 319, 520, 573, 865 |
| Alw26I | GTCTC | 1 cut(s) | 38 |
| AlwI | GGATC | 1 cut(s) | 120 |
| ApeKI | GCWGC | 4 cut(s) | 146, 428, 578, 620 |
| ApoI | RAATTY | 2 cut(s) | 16, 314 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 860 |
| AspLEI | GCGC | 2 cut(s) | 151, 606 |
| AspS9I | GGNCC | 3 cut(s) | 475, 552, 734 |
| AsuHPI | GGTGA | 1 cut(s) | 430 |
| AvaII | GGWCC | 3 cut(s) | 475, 552, 734 |
| BanI | GGYRCC | 1 cut(s) | 158 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 512, 544 |
| BbvI | GCAGC | 4 cut(s) | 133, 440, 565, 607 |
| BclI | TGATCA | 1 cut(s) | 511 |
| BcoDI | GTCTC | 1 cut(s) | 38 |
| BfmI | CTRYAG | 2 cut(s) | 426, 621 |
| BfuAI | ACCTGC | 1 cut(s) | 151 |
| BglII | AGATCT | 2 cut(s) | 93, 826 |
| BisI | GCNGC | 4 cut(s) | 147, 429, 579, 621 |
| BlsI | GCNGC | 4 cut(s) | 148, 430, 580, 622 |
| BmcAI | AGTACT | 1 cut(s) | 535 |
| Bme18I | GGWCC | 3 cut(s) | 475, 552, 734 |
| BmgT120I | GGNCC | 3 cut(s) | 475, 552, 734 |
| BmiI | GGNNCC | 2 cut(s) | 160, 681 |
| BmsI | GCATC | 2 cut(s) | 289, 728 |
| Bpu10I | CCTNAGC | 1 cut(s) | 599 |
| BpuEI | CTTGAG | 1 cut(s) | 567 |
| BsaBI | GATNNNNATC | 1 cut(s) | 117 |
| BsaJI | CCNNGG | 1 cut(s) | 555 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 56 |
| Bse1I | ACTGG | 3 cut(s) | 274, 455, 796 |
| Bse3DI | GCAATG | 1 cut(s) | 613 |
| Bse8I | GATNNNNATC | 1 cut(s) | 117 |
| BseDI | CCNNGG | 1 cut(s) | 555 |
| BseGI | GGATG | 5 cut(s) | 142, 219, 278, 565, 719 |
| BseJI | GATNNNNATC | 1 cut(s) | 117 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BseMI | GCAATG | 1 cut(s) | 613 |
| BseMII | CTCAG | 3 cut(s) | 43, 551, 729 |
| BseNI | ACTGG | 3 cut(s) | 274, 455, 796 |
| BseRI | GAGGAG | 1 cut(s) | 715 |
| BseXI | GCAGC | 4 cut(s) | 133, 440, 565, 607 |
| BseYI | CCCAGC | 1 cut(s) | 100 |
| BshNI | GGYRCC | 1 cut(s) | 158 |
| BslFI | GGGAC | 1 cut(s) | 117 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BsmAI | GTCTC | 1 cut(s) | 38 |
| BsmFI | GGGAC | 1 cut(s) | 117 |
| BsmI | GAATGC | 2 cut(s) | 596, 721 |
| Bsp143I | GATC | 5 cut(s) | 93, 112, 118, 511, 826 |
| Bsp19I | CCATGG | 1 cut(s) | 555 |
| BspCNI | CTCAG | 3 cut(s) | 42, 550, 730 |
| BspHI | TCATGA | 1 cut(s) | 711 |
| BspLI | GGNNCC | 2 cut(s) | 160, 681 |
| BspMAI | CTGCAG | 2 cut(s) | 430, 625 |
| BspMI | ACCTGC | 1 cut(s) | 151 |
| BspPI | GGATC | 1 cut(s) | 120 |
| BspT107I | GGYRCC | 1 cut(s) | 158 |
| BsrDI | GCAATG | 1 cut(s) | 613 |
| BsrI | ACTGG | 3 cut(s) | 274, 455, 796 |
| BssECI | CCNNGG | 1 cut(s) | 555 |
| BssMI | GATC | 5 cut(s) | 93, 112, 118, 511, 826 |
| BssT1I | CCWWGG | 1 cut(s) | 555 |
| Bst4CI | ACNGT | 2 cut(s) | 253, 533 |
| Bst6I | CTCTTC | 1 cut(s) | 851 |
| BstC8I | GCNNGC | 2 cut(s) | 596, 639 |
| BstDEI | CTNAG | 5 cut(s) | 29, 537, 599, 738, 837 |
| BstDSI | CCRYGG | 1 cut(s) | 555 |
| BstF5I | GGATG | 5 cut(s) | 142, 219, 278, 565, 719 |
| BstHHI | GCGC | 2 cut(s) | 151, 606 |
| BstKTI | GATC | 5 cut(s) | 96, 115, 121, 514, 829 |
| BstMAI | GTCTC | 1 cut(s) | 38 |
| BstMBI | GATC | 5 cut(s) | 93, 112, 118, 511, 826 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 308, 780 |
| BstNSI | RCATGY | 1 cut(s) | 641 |
| BstSFI | CTRYAG | 2 cut(s) | 426, 621 |
| BstV1I | GCAGC | 4 cut(s) | 133, 440, 565, 607 |
| BstX2I | RGATCY | 3 cut(s) | 93, 112, 826 |
| BstYI | RGATCY | 3 cut(s) | 93, 112, 826 |
| BtgI | CCRYGG | 1 cut(s) | 555 |
| BtsCI | GGATG | 5 cut(s) | 142, 219, 278, 565, 719 |
| BveI | ACCTGC | 1 cut(s) | 151 |
| Cac8I | GCNNGC | 2 cut(s) | 596, 639 |
| CciI | TCATGA | 1 cut(s) | 711 |
| CfoI | GCGC | 2 cut(s) | 151, 606 |
| Cfr13I | GGNCC | 3 cut(s) | 475, 552, 734 |
| Csp6I | GTAC | 1 cut(s) | 534 |
| CviAII | CATG | 8 cut(s) | 188, 241, 481, 556, 617, 638, 712, 799 |
| CviJI | RGCY | 6 cut(s) | 206, 335, 431, 467, 598, 680 |
| CviKI_1 | RGCY | 6 cut(s) | 206, 335, 431, 467, 598, 680 |
| CviQI | GTAC | 1 cut(s) | 534 |
| DdeI | CTNAG | 5 cut(s) | 29, 537, 599, 738, 837 |
| DpnI | GATC | 5 cut(s) | 95, 114, 120, 513, 828 |
| DpnII | GATC | 5 cut(s) | 93, 112, 118, 511, 826 |
| DraIII | CACNNNGTG | 1 cut(s) | 131 |
| Eam1104I | CTCTTC | 1 cut(s) | 851 |
| EarI | CTCTTC | 1 cut(s) | 851 |
| Eco130I | CCWWGG | 1 cut(s) | 555 |
| Eco47I | GGWCC | 3 cut(s) | 475, 552, 734 |
| Eco57I | CTGAAG | 3 cut(s) | 392, 431, 458 |
| EcoO109I | RGGNCCY | 1 cut(s) | 734 |
| EcoRI | GAATTC | 1 cut(s) | 16 |
| EcoT14I | CCWWGG | 1 cut(s) | 555 |
| EcoT22I | ATGCAT | 1 cut(s) | 721 |
| ErhI | CCWWGG | 1 cut(s) | 555 |
| FaeI | CATG | 8 cut(s) | 191, 244, 484, 559, 620, 641, 715, 802 |
| FaqI | GGGAC | 1 cut(s) | 117 |
| FatI | CATG | 8 cut(s) | 187, 240, 480, 555, 616, 637, 711, 798 |
| FbaI | TGATCA | 1 cut(s) | 511 |
| Fnu4HI | GCNGC | 4 cut(s) | 147, 429, 579, 621 |
| FokI | GGATG | 5 cut(s) | 149, 226, 285, 572, 706 |
| Fsp4HI | GCNGC | 4 cut(s) | 147, 429, 579, 621 |
| GlaI | GCGC | 2 cut(s) | 150, 605 |
| GluI | GCNGC | 4 cut(s) | 147, 429, 579, 621 |
| GsaI | CCCAGC | 1 cut(s) | 104 |
| HhaI | GCGC | 2 cut(s) | 151, 606 |
| Hin1II | CATG | 8 cut(s) | 191, 244, 484, 559, 620, 641, 715, 802 |
| Hin6I | GCGC | 2 cut(s) | 149, 604 |
| HinP1I | GCGC | 2 cut(s) | 149, 604 |
| HinfI | GANTC | 2 cut(s) | 323, 861 |
| HphI | GGTGA | 1 cut(s) | 430 |
| Hpy166II | GTNNAC | 2 cut(s) | 478, 628 |
| Hpy188I | TCNGA | 5 cut(s) | 328, 372, 411, 540, 831 |
| Hpy188III | TCNNGA | 6 cut(s) | 70, 116, 131, 296, 584, 712 |
| Hpy8I | GTNNAC | 2 cut(s) | 478, 628 |
| HpyAV | CCTTC | 6 cut(s) | 196, 325, 377, 433, 510, 514 |
| HpyCH4III | ACNGT | 2 cut(s) | 253, 533 |
| HpyCH4IV | ACGT | 1 cut(s) | 450 |
| HpyCH4V | TGCA | 7 cut(s) | 125, 428, 594, 623, 637, 719, 783 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 308, 780 |
| HpyF3I | CTNAG | 5 cut(s) | 29, 537, 599, 738, 837 |
| HpySE526I | ACGT | 1 cut(s) | 450 |
| Hsp92II | CATG | 8 cut(s) | 191, 244, 484, 559, 620, 641, 715, 802 |
| HspAI | GCGC | 2 cut(s) | 149, 604 |
| Ksp22I | TGATCA | 1 cut(s) | 511 |
| Kzo9I | GATC | 5 cut(s) | 93, 112, 118, 511, 826 |
| LmnI | GCTCC | 3 cut(s) | 13, 308, 685 |
| Lsp1109I | GCAGC | 4 cut(s) | 133, 440, 565, 607 |
| LweI | GCATC | 2 cut(s) | 289, 728 |
| MaeII | ACGT | 1 cut(s) | 450 |
| MaeIII | GTNAC | 4 cut(s) | 216, 265, 523, 794 |
| MalI | GATC | 5 cut(s) | 95, 114, 120, 513, 828 |
| MboI | GATC | 5 cut(s) | 93, 112, 118, 511, 826 |
| MboII | GAAGA | 3 cut(s) | 599, 664, 868 |
| MfeI | CAATTG | 1 cut(s) | 573 |
| MflI | RGATCY | 3 cut(s) | 93, 112, 826 |
| MluCI | AATT | 6 cut(s) | 16, 64, 314, 347, 573, 742 |
| MnlI | CCTC | 7 cut(s) | 127, 172, 251, 457, 703, 733, 736 |
| Mph1103I | ATGCAT | 1 cut(s) | 721 |
| MroXI | GAANNNNTTC | 1 cut(s) | 860 |
| MseI | TTAA | 1 cut(s) | 53 |
| MslI | CAYNNNNRTG | 1 cut(s) | 186 |
| MunI | CAATTG | 1 cut(s) | 573 |
| Mva1269I | GAATGC | 2 cut(s) | 596, 721 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 308, 780 |
| NcoI | CCATGG | 1 cut(s) | 555 |
| NdeII | GATC | 5 cut(s) | 93, 112, 118, 511, 826 |
| NlaIII | CATG | 8 cut(s) | 191, 244, 484, 559, 620, 641, 715, 802 |
| NlaIV | GGNNCC | 2 cut(s) | 160, 681 |
| NmuCI | GTSAC | 2 cut(s) | 216, 794 |
| NsiI | ATGCAT | 1 cut(s) | 721 |
| NspI | RCATGY | 1 cut(s) | 641 |
| PaeI | GCATGC | 1 cut(s) | 641 |
| PagI | TCATGA | 1 cut(s) | 711 |
| PctI | GAATGC | 2 cut(s) | 596, 721 |
| PdmI | GAANNNNTTC | 1 cut(s) | 860 |
| PfeI | GAWTC | 2 cut(s) | 323, 861 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 56 |
| PkrI | GCNGC | 4 cut(s) | 148, 430, 580, 622 |
| PpuMI | RGGWCCY | 1 cut(s) | 734 |
| PsiI | TTATAA | 1 cut(s) | 747 |
| Psp5II | RGGWCCY | 1 cut(s) | 734 |
| PspFI | CCCAGC | 1 cut(s) | 100 |
| PspN4I | GGNNCC | 2 cut(s) | 160, 681 |
| PspPI | GGNCC | 3 cut(s) | 475, 552, 734 |
| PspPPI | RGGWCCY | 1 cut(s) | 734 |
| PstI | CTGCAG | 2 cut(s) | 430, 625 |
| PsuI | RGATCY | 3 cut(s) | 93, 112, 826 |
| RsaI | GTAC | 1 cut(s) | 535 |
| RsaNI | GTAC | 1 cut(s) | 534 |
| RseI | CAYNNNNRTG | 1 cut(s) | 186 |
| SaqAI | TTAA | 1 cut(s) | 53 |
| SatI | GCNGC | 4 cut(s) | 147, 429, 579, 621 |
| Sau3AI | GATC | 5 cut(s) | 93, 112, 118, 511, 826 |
| Sau96I | GGNCC | 3 cut(s) | 475, 552, 734 |
| ScaI | AGTACT | 1 cut(s) | 535 |
| SetI | ASST | 9 cut(s) | 145, 160, 262, 394, 453, 525, 695, 739, 773 |
| SfaNI | GCATC | 2 cut(s) | 289, 728 |
| SfcI | CTRYAG | 2 cut(s) | 426, 621 |
| SinI | GGWCC | 3 cut(s) | 475, 552, 734 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 186 |
| SmlI | CTYRAG | 1 cut(s) | 582 |
| SmoI | CTYRAG | 1 cut(s) | 582 |
| SphI | GCATGC | 1 cut(s) | 641 |
| Sse9I | AATT | 6 cut(s) | 16, 64, 314, 347, 573, 742 |
| StyI | CCWWGG | 1 cut(s) | 555 |
| TaaI | ACNGT | 2 cut(s) | 253, 533 |
| TaiI | ACGT | 1 cut(s) | 453 |
| TaqI | TCGA | 2 cut(s) | 45, 117 |
| TasI | AATT | 6 cut(s) | 16, 64, 314, 347, 573, 742 |
| TatI | WGTACW | 1 cut(s) | 533 |
| TfiI | GAWTC | 2 cut(s) | 323, 861 |
| Tru1I | TTAA | 1 cut(s) | 53 |
| Tru9I | TTAA | 1 cut(s) | 53 |
| TseFI | GTSAC | 2 cut(s) | 216, 794 |
| TseI | GCWGC | 4 cut(s) | 146, 428, 578, 620 |
| Tsp45I | GTSAC | 2 cut(s) | 216, 794 |
| TspDTI | ATGAA | 6 cut(s) | 153, 245, 396, 576, 728, 815 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 56 |
| VpaK11BI | GGWCC | 3 cut(s) | 475, 552, 734 |
| XapI | RAATTY | 2 cut(s) | 16, 314 |
| XceI | RCATGY | 1 cut(s) | 641 |
| XmnI | GAANNNNTTC | 1 cut(s) | 860 |
| ZrmI | AGTACT | 1 cut(s) | 535 |
| Zsp2I | ATGCAT | 1 cut(s) | 721 |