FvH4_3g28581

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000077
Physical Location & Seq
Forward (+)
21593163 .. 21595444
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28581.t1

Sequence Viewer

Length: 1485 bp
ATGGACAAGCTACACACTACCAAGTTCAACCTGAACATGAGCATGAGGGAGCATATCCTTCAGATGATTAGCATCTTAGCCCAGCTTAGTGACCTTGGTATGCCTTTGGATGATGGTTATATGGTGTATCAAGTGCTTAACTCTCTGCCAGCTCAGTTTGACGGTCTTTCCCTAGCCTATCATACCCAAACTGATAAGTGGACCTTAGATCAGTTGATAGCAGTCTGTGTGCATGAGCACGAGAGGCTTAAGAAGACTAAGCCTACTGTTGTGAATCTGGTCACAAAACCTCAGTGGAAGAATAAGAAAGCTGGGGGTCAGTATAAGCCTAACCTGCATAAGAAACCAGAGAACATGAAGGCGAAAGGGAATGCTGAGAATAAGAATTTTCAGTGTTATTTTTGTAAGCGGCCTGGTCATCTGAAGAGGGACTGTAATGTGTTTAAGAATTGGAGGGCCAAGCAAGGGGTTCCAAAGCAGCAGGGGCAGGGAGCCAAGAAAAAAATTTATAAAGCTGAAGTTGAGAAAGAACTGAATGTAGTGATTAAGGTTGTGAGATCAGATAGGGGAGGAGAATATTATGGTAGACACACTGAGAAGGGACAACACAAGGGTCCATTTGCACTCTTTTTGCAAGAAAATGGGATCCAGGCTCAGTACACTGCACCAGGTACTCCTGAACAGAATGGGGTAGCTGAGAGGAGAAATAGAACTTTTCTTAACATGGTGAGGTGCATGATGTGCACTTCAGGGCTTCCCAAATTTTTGTGGGGGGAAGCATTGAAAACAGCCAACTACATCACTAATAGAACCCCAACCAAGGCAGTGACAAAGACACCATTTGAATTGTGGAACGGTAGAAAGCCTAGTGTGATGCATGCATATGTGTGGGGGTGTAGAGCAGAAGCCAAAGCCTACAATCCTAAAGAGTCCAAATTGGATTCGAAAACCATTTCAGCCTTTTTCATTGGTTACCCTGAGAATTCTAGAGGTTTTAAATTCTACTGCCCTTCCCATACCAGTAGAACAATTGAAACCAATAAAGCAGTGTTTTTGAATGAGATGGCTTTTACTGATAAGTTTGATGATTTTGTGCTTGAAGAATTGGTTGAGACTGATTTTTCTGATGTTGATATGCATGTTGTGTCCGAGCCTACTGTAACCATTCACATACCTTCGACTGAGAATTATGCAGATGCCATAGTGCCAAACCAAAATGAATTTCCAGTTGTGCAAAATGCAGTAGCTCAAGAAATGCCTAATCCAGCAGTAGAAAATGCAGCTGAGAATGTTGTAGCACCACCACAACCTGTTTTGAGAAGATCTCAGAGAGAGAGAAAGTCAGCCTTAGCCAATCTAGCTGTAGACTACCAGATTTATTTGCAGGAAATAGAGTTTGATGTTGGTGAGTTGGATGATCCCACTACTTTTAAAGAAGCTATTGAAAGCTTGAATTCTCAAAAATGGGAGGAATATCTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 rve

Protein Analysis

495

Amino Acids

56.4

Weight (kDa)

8.74

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 3 - 87 1.2e-11 gag-polypeptide of LTR copia-type
SH3_retrovirus PF25597 299 - 358 2.5e-10 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53670
fragaria_vesca FvH4_1g12751 FvH4_1g13491 FvH4_1g13491 FvH4_1g16302 FvH4_1g16303 FvH4_1g29161 FvH4_1g29941 FvH4_2g02290 FvH4_2g05985 FvH4_2g15841 FvH4_2g18261 FvH4_2g22761 FvH4_2g22761 FvH4_2g22761 FvH4_3g13432 FvH4_3g14801 FvH4_3g28581 FvH4_3g30611 FvH4_3g30611 FvH4_3g30611 FvH4_3g32571 FvH4_3g32571 FvH4_3g32571 FvH4_3g33631 FvH4_3g36663 FvH4_3g36664 FvH4_4g00961 FvH4_4g17672 FvH4_5g13441 FvH4_5g30231 FvH4_5g39263 FvH4_6g06661 FvH4_6g06662 FvH4_6g40841 FvH4_7g00732 FvH4_7g11331 FvH4_7g12361
malus_domestica MD02G1100700.v1.1 MD02G1280000.v1.1 MD03G1045100.v1.1 MD04G1043300.v1.1 MD05G1061800.v1.1 MD05G1118300.v1.1 MD05G1334900.v1.1 MD08G1232100.v1.1 MD10G1202700.v1.1 MD11G1016600.v1.1 MD11G1271900.v1.1 MD15G1002900.v1.1 MD15G1059300.v1.1
prunus_persica Prupe.1G445900_v2.0.a1 Prupe.4G244000_v2.0.a1 Prupe.6G221400_v2.0.a1 Prupe.6G301400_v2.0.a1 Prupe.7G031600_v2.0.a1 Prupe.8G017100_v2.0.a1
pyrus_communis pycom01g08140 pycom01g19130 pycom02g09810 pycom03g12420 pycom05g09140 pycom05g22780 pycom06g17440 pycom07g04850 pycom07g08300 pycom08g09110 pycom08g10760 pycom09g15580 pycom09g18260 pycom09g18400 pycom11g07380 pycom11g20370 pycom12g01630 pycom12g11730 pycom13g21040 pycom14g00290 pycom14g10520 pycom15g16640 pycom15g18720 pycom15g24540 pycom15g26360 pycom16g08100 pycom16g09950 pycom16g11700 pycom16g19690 pycom17g20400
rosa_chinensis RchiOBHm_Chr1g0317481 RchiOBHm_Chr1g0322601 RchiOBHm_Chr1g0324761 RchiOBHm_Chr1g0335001 RchiOBHm_Chr1g0336961 RchiOBHm_Chr1g0345341 RchiOBHm_Chr1g0348501 RchiOBHm_Chr1g0352591 RchiOBHm_Chr1g0354901 RchiOBHm_Chr1g0365141 RchiOBHm_Chr1g0365511 RchiOBHm_Chr1g0368471 RchiOBHm_Chr1g0373471 RchiOBHm_Chr1g0373951 RchiOBHm_Chr1g0375621 RchiOBHm_Chr1g0378491 RchiOBHm_Chr1g0383431 RchiOBHm_Chr2g0086291 RchiOBHm_Chr2g0096681 RchiOBHm_Chr2g0117391 RchiOBHm_Chr2g0121511 RchiOBHm_Chr2g0128511 RchiOBHm_Chr2g0159591 RchiOBHm_Chr2g0173271 RchiOBHm_Chr3g0453771 RchiOBHm_Chr3g0462071 RchiOBHm_Chr3g0467151 RchiOBHm_Chr3g0468531 RchiOBHm_Chr3g0478981 RchiOBHm_Chr3g0488371 RchiOBHm_Chr3g0496001 RchiOBHm_Chr3g0496651 RchiOBHm_Chr4g0390941 RchiOBHm_Chr4g0431251 RchiOBHm_Chr4g0441691 RchiOBHm_Chr5g0001181 RchiOBHm_Chr5g0001671 RchiOBHm_Chr5g0021461 RchiOBHm_Chr5g0045101 RchiOBHm_Chr5g0045461 RchiOBHm_Chr5g0063421 RchiOBHm_Chr5g0068061 RchiOBHm_Chr5g0069541 RchiOBHm_Chr5g0073131 RchiOBHm_Chr5g0076631 RchiOBHm_Chr5g0079181 RchiOBHm_Chr5g0082051 RchiOBHm_Chr6g0248451 RchiOBHm_Chr6g0255561 RchiOBHm_Chr6g0266491 RchiOBHm_Chr6g0268111 RchiOBHm_Chr6g0304521 RchiOBHm_Chr6g0306511 RchiOBHm_Chr7g0181641 RchiOBHm_Chr7g0181791 RchiOBHm_Chr7g0188321 RchiOBHm_Chr7g0194951 RchiOBHm_Chr7g0195071 RchiOBHm_Chr7g0199671 RchiOBHm_Chr7g0204631 RchiOBHm_Chr7g0231771 RchiOBHm_Chr7g0231831 RchiOBHm_Chr7g0242511
rosa_laevigata RLG00000015596 RLG00000021778 RLG00000028187
rosa_multiflora Rmu_co8285397.1_g000001 Rmu_co8301931.1_g000001 Rmu_co8376351.1_g000001 Rmu_co8412043.1_g000001 Rmu_sc0000079.1_g000006 Rmu_sc0000160.1_g000007 Rmu_sc0000208.1_g000006 Rmu_sc0000258.1_g000016 Rmu_sc0000295.1_g000008 Rmu_sc0000302.1_g000025 Rmu_sc0000423.1_g000039 Rmu_sc0000441.1_g000040 Rmu_sc0000538.1_g000074 Rmu_sc0000603.1_g000019 Rmu_sc0000611.1_g000018 Rmu_sc0000729.1_g000002 Rmu_sc0000837.1_g000044 Rmu_sc0000903.1_g000015 Rmu_sc0000924.1_g000029 Rmu_sc0001173.1_g000021 Rmu_sc0001289.1_g000004 Rmu_sc0001347.1_g000005 Rmu_sc0001464.1_g000020 Rmu_sc0001618.1_g000015 Rmu_sc0002014.1_g000002 Rmu_sc0002047.1_g000002 Rmu_sc0002160.1_g000029 Rmu_sc0002310.1_g000011 Rmu_sc0002416.1_g000002 Rmu_sc0002417.1_g000008 Rmu_sc0002445.1_g000008 Rmu_sc0002691.1_g000026 Rmu_sc0002700.1_g000021 Rmu_sc0002748.1_g000032 Rmu_sc0002792.1_g000048 Rmu_sc0002831.1_g000012 Rmu_sc0002928.1_g000025 Rmu_sc0002956.1_g000001 Rmu_sc0003170.1_g000039 Rmu_sc0003232.1_g000024 Rmu_sc0003391.1_g000014 Rmu_sc0003600.1_g000009 Rmu_sc0003630.1_g000064 Rmu_sc0003633.1_g000035 Rmu_sc0003802.1_g000001 Rmu_sc0003881.1_g000001 Rmu_sc0003989.1_g000001 Rmu_sc0004208.1_g000021 Rmu_sc0004815.1_g000004 Rmu_sc0004821.1_g000002 Rmu_sc0005237.1_g000004 Rmu_sc0005638.1_g000006 Rmu_sc0005996.1_g000004 Rmu_sc0006604.1_g000005 Rmu_sc0007023.1_g000007 Rmu_sc0007084.1_g000004 Rmu_sc0007239.1_g000001 Rmu_sc0007338.1_g000010 Rmu_sc0007398.1_g000004 Rmu_sc0007630.1_g000001 Rmu_sc0008067.1_g000001 Rmu_sc0008114.1_g000001 Rmu_sc0008623.1_g000008 Rmu_sc0009777.1_g000010 Rmu_sc0012719.1_g000001 Rmu_sc0014173.1_g000001 Rmu_sc0015338.1_g000002 Rmu_sc0015804.1_g000002 Rmu_sc0023779.1_g000001 Rmu_sc0024140.1_g000001 Rmu_sc0024833.1_g000006 Rmu_ssc0000087.1_g000013 Rmu_ssc0000400.1_g000088 Rmu_ssc0000400.1_g000089
rosa_roxburghii Rroxscaffold_175G00432540 Rroxscaffold_1G00003260 Rroxscaffold_1G00032490 Rroxscaffold_1G00035100 Rroxscaffold_1G00051960 Rroxscaffold_1G00056120 Rroxscaffold_2G00091260 Rroxscaffold_2G00097580 Rroxscaffold_2G00100910 Rroxscaffold_2G00101000 Rroxscaffold_2G00104370 Rroxscaffold_2G00154020 Rroxscaffold_3G00219010 Rroxscaffold_3G00241360 Rroxscaffold_3G00265190 Rroxscaffold_4G00328620 Rroxscaffold_5G00338660 Rroxscaffold_5G00339430 Rroxscaffold_5G00346490 Rroxscaffold_5G00360740 Rroxscaffold_5G00373490 Rroxscaffold_5G00373950 Rroxscaffold_5G00379290 Rroxscaffold_6G00390000 Rroxscaffold_6G00406560 Rroxscaffold_7G00163660 Rroxscaffold_7G00172220 Rroxscaffold_7G00182760 Rroxscaffold_7G00217680 Rroxscaffold_7G00217910
rosa_rugosa Rorug03G0299400 Rorug04G0048800 Rorug05G0503600 Rorug07G0090800 Rorug07G0090900 Rorug07G0294700
rosa_samantha Rh3BG243300 Rh4BG398100
rosa_wichuraiana Rw0G005950 Rw0G023070 Rw1G003680 Rw1G004130 Rw1G007910 Rw1G013940 Rw1G018710 Rw1G022140 Rw1G031170 Rw1G041420 Rw2G024950 Rw2G045000 Rw2G049360 Rw3G007370 Rw3G009120 Rw3G011780 Rw3G027830 Rw4G001510 Rw4G003110 Rw4G008370 Rw4G022100 Rw4G035490 Rw5G001650 Rw5G002000 Rw5G002590 Rw5G017930 Rw5G020530 Rw5G024010 Rw5G024710 Rw5G025620 Rw5G027980 Rw5G030200 Rw5G036530 Rw5G044700 Rw6G006860 Rw6G018940 Rw6G019810 Rw6G029740 Rw7G009360 Rw7G017280 Rw7G017540 Rw7G020090 Rw7G022500 Rw7G031420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 342
AccI GTMKAC 2 cut(s) 586, 1365
AciI CCGC 1 cut(s) 409
AclWI GGATC 3 cut(s) 640, 653, 1412
AcsI RAATTY 7 cut(s) 385, 504, 761, 982, 998, 1220, 1453
AcuI CTGAAG 4 cut(s) 44, 443, 537, 732
AfaI GTAC 2 cut(s) 659, 673
AfiI CCNNNNNNNGG 2 cut(s) 465, 820
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 8 cut(s) 28, 784, 845, 1034, 1057, 1100, 1445, 1453
AjnI CCWGG 3 cut(s) 412, 648, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 1206, 1238
Alw21I GWGCWC 2 cut(s) 240, 746
Alw26I GTCTC 1 cut(s) 1106
Alw44I GTGCAC 1 cut(s) 742
AlwI GGATC 3 cut(s) 640, 653, 1412
AoxI GGCC 2 cut(s) 410, 456
ApaLI GTGCAC 1 cut(s) 742
ApeKI GCWGC 2 cut(s) 478, 1280
ApoI RAATTY 7 cut(s) 385, 504, 761, 982, 998, 1220, 1453
AspS9I GGNCC 3 cut(s) 201, 456, 614
AsuHPI GGTGA 2 cut(s) 739, 1418
AsuII TTCGAA 1 cut(s) 944
AvaII GGWCC 2 cut(s) 201, 614
BaeGI GKGCMC 1 cut(s) 746
BamHI GGATCC 1 cut(s) 645
BauI CACGAG 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 2 cut(s) 240, 746
BbvI GCAGC 2 cut(s) 490, 1292
BccI CCATC 2 cut(s) 107, 1057
BciT130I CCWGG 3 cut(s) 414, 650, 669
BcoDI GTCTC 1 cut(s) 1106
BfaI CTAG 4 cut(s) 173, 867, 987, 1358
BfmI CTRYAG 1 cut(s) 1362
BfrI CTTAAG 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 342
BglII AGATCT 1 cut(s) 1322
BisI GCNGC 3 cut(s) 410, 479, 1281
BlsI GCNGC 3 cut(s) 411, 480, 1282
Bme1390I CCNGG 3 cut(s) 414, 650, 669
Bme18I GGWCC 2 cut(s) 201, 614
BmgT120I GGNCC 3 cut(s) 201, 456, 614
BmiI GGNNCC 4 cut(s) 471, 493, 615, 647
BmrFI CCNGG 3 cut(s) 414, 650, 669
BmsI GCATC 3 cut(s) 81, 864, 1186
BpiI GAAGAC 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 1309, 1341
Bpu10I CCTNAGC 1 cut(s) 1348
Bpu14I TTCGAA 1 cut(s) 944
BpuEI CTTGAG 1 cut(s) 1233
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 94, 819
Bsc4I CCNNNNNNNGG 2 cut(s) 465, 820
Bse1I ACTGG 2 cut(s) 1020, 1226
Bse8I GATNNNNATC 1 cut(s) 71
BseBI CCWGG 3 cut(s) 414, 650, 669
BseDI CCNNGG 2 cut(s) 94, 819
BseGI GGATG 2 cut(s) 115, 1420
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 465, 820
BseNI ACTGG 2 cut(s) 1020, 1226
BseRI GAGGAG 2 cut(s) 585, 715
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 2 cut(s) 490, 1292
BseYI CCCAGC 2 cut(s) 81, 311
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 2 cut(s) 412, 458
BsiHKAI GWGCWC 2 cut(s) 240, 746
BslFI GGGAC 2 cut(s) 443, 615
BslI CCNNNNNNNGG 2 cut(s) 465, 820
BsmAI GTCTC 1 cut(s) 1106
BsmFI GGGAC 2 cut(s) 443, 615
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 2 cut(s) 412, 458
Bsp119I TTCGAA 1 cut(s) 944
Bsp1286I GDGCHC 2 cut(s) 240, 746
Bsp143I GATC 5 cut(s) 208, 557, 645, 1322, 1417
BspACI CCGC 1 cut(s) 409
BspANI GGCC 2 cut(s) 412, 458
BspLI GGNNCC 4 cut(s) 471, 493, 615, 647
BspMI ACCTGC 1 cut(s) 342
BspPI GGATC 3 cut(s) 640, 653, 1412
BspT104I TTCGAA 1 cut(s) 944
BspTI CTTAAG 1 cut(s) 248
BsrI ACTGG 2 cut(s) 1020, 1226
BssECI CCNNGG 2 cut(s) 94, 819
BssMI GATC 5 cut(s) 208, 557, 645, 1322, 1417
BssSI CACGAG 1 cut(s) 239
BssT1I CCWWGG 2 cut(s) 94, 819
Bst2BI CACGAG 1 cut(s) 239
Bst2UI CCWGG 3 cut(s) 414, 650, 669
Bst4CI ACNGT 5 cut(s) 164, 268, 434, 857, 1159
Bst6I CTCTTC 1 cut(s) 419
BstAFI CTTAAG 1 cut(s) 248
BstAPI GCANNNNNTGC 1 cut(s) 741
BstBI TTCGAA 1 cut(s) 944
BstC8I GCNNGC 2 cut(s) 150, 879
BstEII GGTNACC 1 cut(s) 971
BstF5I GGATG 2 cut(s) 115, 1420
BstKTI GATC 5 cut(s) 211, 560, 648, 1325, 1420
BstMAI GTCTC 1 cut(s) 1106
BstMBI GATC 5 cut(s) 208, 557, 645, 1322, 1417
BstMWI GCNNNNNNNGC 5 cut(s) 244, 334, 484, 741, 1358
BstNI CCWGG 3 cut(s) 414, 650, 669
BstNSI RCATGY 2 cut(s) 881, 1142
BstPI GGTNACC 1 cut(s) 971
BstSCI CCNGG 3 cut(s) 412, 648, 667
BstSFI CTRYAG 1 cut(s) 1362
BstSLI GKGCMC 1 cut(s) 746
BstV1I GCAGC 2 cut(s) 490, 1292
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 645, 1322
BstYI RGATCY 2 cut(s) 645, 1322
BsuRI GGCC 2 cut(s) 412, 458
BtsCI GGATG 2 cut(s) 115, 1420
BtsI GCAGTG 3 cut(s) 660, 831, 1053
BtsIMutI CAGTG 6 cut(s) 299, 398, 591, 660, 831, 1053
BveI ACCTGC 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 150, 879
Cfr13I GGNCC 3 cut(s) 201, 456, 614
CsiI ACCWGGT 1 cut(s) 667
Csp6I GTAC 2 cut(s) 658, 672
CviAII CATG 8 cut(s) 37, 43, 233, 355, 724, 736, 878, 1139
CviQI GTAC 2 cut(s) 658, 672
DpnI GATC 5 cut(s) 210, 559, 647, 1324, 1419
DpnII GATC 5 cut(s) 208, 557, 645, 1322, 1417
DraI TTTAAA 2 cut(s) 997, 1432
Eam1104I CTCTTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 419
Eco130I CCWWGG 2 cut(s) 94, 819
Eco47I GGWCC 2 cut(s) 201, 614
Eco57I CTGAAG 4 cut(s) 44, 443, 537, 732
Eco91I GGTNACC 1 cut(s) 971
EcoO65I GGTNACC 1 cut(s) 971
EcoRI GAATTC 2 cut(s) 982, 1453
EcoRII CCWGG 3 cut(s) 412, 648, 667
EcoT14I CCWWGG 2 cut(s) 94, 819
EcoT22I ATGCAT 3 cut(s) 879, 883, 1140
ErhI CCWWGG 2 cut(s) 94, 819
FaeI CATG 8 cut(s) 40, 46, 236, 358, 727, 739, 881, 1142
FalI AAGNNNNNCTT 4 cut(s) 188, 220, 1331, 1363
FaqI GGGAC 2 cut(s) 443, 615
FatI CATG 8 cut(s) 36, 42, 232, 354, 723, 735, 877, 1138
FauNDI CATATG 1 cut(s) 883
FblI GTMKAC 2 cut(s) 586, 1365
Fnu4HI GCNGC 3 cut(s) 410, 479, 1281
FokI GGATG 2 cut(s) 122, 1427
Fsp4HI GCNGC 3 cut(s) 410, 479, 1281
FspBI CTAG 4 cut(s) 173, 867, 987, 1358
GluI GCNGC 3 cut(s) 410, 479, 1281
GsaI CCCAGC 2 cut(s) 85, 315
HaeIII GGCC 2 cut(s) 412, 458
Hin1II CATG 8 cut(s) 40, 46, 236, 358, 727, 739, 881, 1142
HindIII AAGCTT 1 cut(s) 1447
HinfI GANTC 3 cut(s) 274, 929, 941
HphI GGTGA 2 cut(s) 739, 1418
Hpy166II GTNNAC 5 cut(s) 201, 587, 660, 744, 1366
Hpy188I TCNGA 7 cut(s) 63, 423, 562, 1126, 1150, 1329, 1479
Hpy188III TCNNGA 3 cut(s) 677, 987, 1250
Hpy8I GTNNAC 5 cut(s) 201, 587, 660, 744, 1366
HpyAV CCTTC 5 cut(s) 68, 352, 592, 1020, 1185
HpyCH4III ACNGT 5 cut(s) 164, 268, 434, 857, 1159
HpyF10VI GCNNNNNNNGC 5 cut(s) 244, 334, 484, 741, 1358
Hsp92II CATG 8 cut(s) 40, 46, 236, 358, 727, 739, 881, 1142
Kzo9I GATC 5 cut(s) 208, 557, 645, 1322, 1417
LmnI GCTCC 2 cut(s) 49, 491
Lsp1109I GCAGC 2 cut(s) 490, 1292
LweI GCATC 3 cut(s) 81, 864, 1186
MabI ACCWGGT 1 cut(s) 667
MaeI CTAG 4 cut(s) 173, 867, 987, 1358
MaeIII GTNAC 5 cut(s) 89, 280, 826, 971, 1159
MalI GATC 5 cut(s) 210, 559, 647, 1324, 1419
MboI GATC 5 cut(s) 208, 557, 645, 1322, 1417
MboII GAAGA 5 cut(s) 265, 310, 436, 1112, 1332
MfeI CAATTG 1 cut(s) 1029
MflI RGATCY 2 cut(s) 645, 1322
MhlI GDGCHC 2 cut(s) 240, 746
MlyI GAGTC 1 cut(s) 938
MmeI TCCRAC 1 cut(s) 1392
Mph1103I ATGCAT 3 cut(s) 879, 883, 1140
MseI TTAA 8 cut(s) 138, 249, 444, 546, 720, 996, 1431, 1483
MslI CAYNNNNRTG 3 cut(s) 41, 882, 886
MspA1I CMGCKG 1 cut(s) 1283
MspCI CTTAAG 1 cut(s) 248
MspR9I CCNGG 3 cut(s) 414, 650, 669
MunI CAATTG 1 cut(s) 1029
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 3 cut(s) 414, 650, 669
MwoI GCNNNNNNNGC 5 cut(s) 244, 334, 484, 741, 1358
NdeI CATATG 1 cut(s) 883
NdeII GATC 5 cut(s) 208, 557, 645, 1322, 1417
NlaIII CATG 8 cut(s) 40, 46, 236, 358, 727, 739, 881, 1142
NlaIV GGNNCC 4 cut(s) 471, 493, 615, 647
NmuCI GTSAC 3 cut(s) 89, 280, 826
NsiI ATGCAT 3 cut(s) 879, 883, 1140
NspI RCATGY 2 cut(s) 881, 1142
NspV TTCGAA 1 cut(s) 944
PaeI GCATGC 1 cut(s) 881
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 274, 941
PkrI GCNGC 3 cut(s) 411, 480, 1282
PleI GAGTC 1 cut(s) 937
PpsI GAGTC 1 cut(s) 937
PsiI TTATAA 1 cut(s) 510
Psp6I CCWGG 3 cut(s) 412, 648, 667
PspEI GGTNACC 1 cut(s) 971
PspFI CCCAGC 2 cut(s) 81, 311
PspGI CCWGG 3 cut(s) 412, 648, 667
PspN4I GGNNCC 4 cut(s) 471, 493, 615, 647
PspPI GGNCC 3 cut(s) 201, 456, 614
PsuI RGATCY 2 cut(s) 645, 1322
PvuII CAGCTG 1 cut(s) 1283
RsaI GTAC 2 cut(s) 659, 673
RsaNI GTAC 2 cut(s) 658, 672
RseI CAYNNNNRTG 3 cut(s) 41, 882, 886
SaqAI TTAA 8 cut(s) 138, 249, 444, 546, 720, 996, 1431, 1483
SatI GCNGC 3 cut(s) 410, 479, 1281
Sau3AI GATC 5 cut(s) 208, 557, 645, 1322, 1417
Sau96I GGNCC 3 cut(s) 201, 456, 614
SchI GAGTC 1 cut(s) 938
ScrFI CCNGG 3 cut(s) 414, 650, 669
SduI GDGCHC 2 cut(s) 240, 746
SexAI ACCWGGT 1 cut(s) 667
SfaNI GCATC 3 cut(s) 81, 864, 1186
SfcI CTRYAG 1 cut(s) 1362
SfuI TTCGAA 1 cut(s) 944
SinI GGWCC 2 cut(s) 201, 614
SmiMI CAYNNNNRTG 3 cut(s) 41, 882, 886
SmlI CTYRAG 2 cut(s) 248, 1248
SmoI CTYRAG 2 cut(s) 248, 1248
SphI GCATGC 1 cut(s) 881
SsiI CCGC 1 cut(s) 409
SspI AATATT 1 cut(s) 578
SspMI CTAG 4 cut(s) 173, 867, 987, 1358
StyD4I CCNGG 3 cut(s) 412, 648, 667
StyI CCWWGG 2 cut(s) 94, 819
TaaI ACNGT 5 cut(s) 164, 268, 434, 857, 1159
TaqI TCGA 2 cut(s) 944, 1178
TatI WGTACW 1 cut(s) 657
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 2 cut(s) 274, 941
Tru1I TTAA 8 cut(s) 138, 249, 444, 546, 720, 996, 1431, 1483
Tru9I TTAA 8 cut(s) 138, 249, 444, 546, 720, 996, 1431, 1483
TscAI CASTG 6 cut(s) 299, 398, 598, 667, 831, 1053
TseFI GTSAC 3 cut(s) 89, 280, 826
TseI GCWGC 2 cut(s) 478, 1280
Tsp45I GTSAC 3 cut(s) 89, 280, 826
TspDTI ATGAA 3 cut(s) 371, 955, 1233
TspRI CASTG 6 cut(s) 299, 398, 598, 667, 831, 1053
Vha464I CTTAAG 1 cut(s) 248
VneI GTGCAC 1 cut(s) 742
VpaK11BI GGWCC 2 cut(s) 201, 614
XapI RAATTY 7 cut(s) 385, 504, 761, 982, 998, 1220, 1453
XbaI TCTAGA 1 cut(s) 986
XceI RCATGY 2 cut(s) 881, 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 846
XmiI GTMKAC 2 cut(s) 586, 1365
XspI CTAG 4 cut(s) 173, 867, 987, 1358
Zsp2I ATGCAT 3 cut(s) 879, 883, 1140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.