gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 29 - 198 | 4.3e-22 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 110, 440 |
| AcoI | YGGCCR | 1 cut(s) | 261 |
| AcuI | CTGAAG | 1 cut(s) | 246 |
| AfaI | GTAC | 1 cut(s) | 272 |
| AgsI | TTSAA | 5 cut(s) | 42, 49, 109, 394, 566 |
| AjnI | CCWGG | 1 cut(s) | 198 |
| AluBI | AGCT | 2 cut(s) | 155, 547 |
| AluI | AGCT | 2 cut(s) | 155, 547 |
| Alw21I | GWGCWC | 1 cut(s) | 343 |
| AlwI | GGATC | 2 cut(s) | 110, 440 |
| AoxI | GGCC | 2 cut(s) | 195, 261 |
| ApeKI | GCWGC | 1 cut(s) | 410 |
| AspS9I | GGNCC | 1 cut(s) | 196 |
| BalI | TGGCCA | 1 cut(s) | 263 |
| BbsI | GAAGAC | 1 cut(s) | 579 |
| Bbv12I | GWGCWC | 1 cut(s) | 343 |
| BbvI | GCAGC | 1 cut(s) | 397 |
| BccI | CCATC | 3 cut(s) | 187, 356, 490 |
| BciT130I | CCWGG | 1 cut(s) | 200 |
| BfaI | CTAG | 6 cut(s) | 68, 80, 141, 147, 248, 455 |
| BfmI | CTRYAG | 1 cut(s) | 333 |
| BglII | AGATCT | 1 cut(s) | 215 |
| BisI | GCNGC | 1 cut(s) | 411 |
| BlsI | GCNGC | 1 cut(s) | 412 |
| BmcAI | AGTACT | 1 cut(s) | 272 |
| Bme1390I | CCNGG | 1 cut(s) | 200 |
| BmgT120I | GGNCC | 1 cut(s) | 196 |
| BmrFI | CCNGG | 1 cut(s) | 200 |
| BmsI | GCATC | 1 cut(s) | 384 |
| BpiI | GAAGAC | 1 cut(s) | 579 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 536, 568 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| BsaJI | CCNNGG | 1 cut(s) | 198 |
| BsaWI | WCCGGW | 1 cut(s) | 347 |
| BseBI | CCWGG | 1 cut(s) | 200 |
| BseDI | CCNNGG | 1 cut(s) | 198 |
| BseGI | GGATG | 1 cut(s) | 198 |
| BseMII | CTCAG | 2 cut(s) | 393, 509 |
| BseXI | GCAGC | 1 cut(s) | 397 |
| BseYI | CCCAGC | 1 cut(s) | 121 |
| BshFI | GGCC | 2 cut(s) | 197, 263 |
| BsiHKAI | GWGCWC | 1 cut(s) | 343 |
| BsiSI | CCGG | 1 cut(s) | 348 |
| BsnI | GGCC | 2 cut(s) | 197, 263 |
| Bsp1286I | GDGCHC | 1 cut(s) | 343 |
| Bsp143I | GATC | 4 cut(s) | 115, 215, 445, 549 |
| BspANI | GGCC | 2 cut(s) | 197, 263 |
| BspCNI | CTCAG | 2 cut(s) | 394, 508 |
| BspPI | GGATC | 2 cut(s) | 110, 440 |
| BssECI | CCNNGG | 1 cut(s) | 198 |
| BssMI | GATC | 4 cut(s) | 115, 215, 445, 549 |
| Bst2UI | CCWGG | 1 cut(s) | 200 |
| Bst4CI | ACNGT | 2 cut(s) | 174, 538 |
| Bst6I | CTCTTC | 1 cut(s) | 206 |
| BstDEI | CTNAG | 3 cut(s) | 156, 402, 495 |
| BstEII | GGTNACC | 1 cut(s) | 433 |
| BstF5I | GGATG | 1 cut(s) | 198 |
| BstKTI | GATC | 4 cut(s) | 118, 218, 448, 552 |
| BstMBI | GATC | 4 cut(s) | 115, 215, 445, 549 |
| BstNI | CCWGG | 1 cut(s) | 200 |
| BstNSI | RCATGY | 1 cut(s) | 104 |
| BstPI | GGTNACC | 1 cut(s) | 433 |
| BstSCI | CCNGG | 1 cut(s) | 198 |
| BstSFI | CTRYAG | 1 cut(s) | 333 |
| BstV1I | GCAGC | 1 cut(s) | 397 |
| BstV2I | GAAGAC | 1 cut(s) | 579 |
| BstX2I | RGATCY | 2 cut(s) | 115, 215 |
| BstYI | RGATCY | 2 cut(s) | 115, 215 |
| BsuRI | GGCC | 2 cut(s) | 197, 263 |
| BtsCI | GGATG | 1 cut(s) | 198 |
| BtsIMutI | CAGTG | 1 cut(s) | 179 |
| Cfr13I | GGNCC | 1 cut(s) | 196 |
| Csp6I | GTAC | 1 cut(s) | 271 |
| CviAII | CATG | 1 cut(s) | 101 |
| CviJI | RGCY | 7 cut(s) | 155, 197, 263, 425, 547, 602, 622 |
| CviKI_1 | RGCY | 7 cut(s) | 155, 197, 263, 425, 547, 602, 622 |
| CviQI | GTAC | 1 cut(s) | 271 |
| DdeI | CTNAG | 3 cut(s) | 156, 402, 495 |
| DpnI | GATC | 4 cut(s) | 117, 217, 447, 551 |
| DpnII | GATC | 4 cut(s) | 115, 215, 445, 549 |
| DraI | TTTAAA | 1 cut(s) | 277 |
| EaeI | YGGCCR | 1 cut(s) | 261 |
| Eam1104I | CTCTTC | 1 cut(s) | 206 |
| EarI | CTCTTC | 1 cut(s) | 206 |
| Eco32I | GATATC | 1 cut(s) | 303 |
| Eco57I | CTGAAG | 1 cut(s) | 246 |
| Eco91I | GGTNACC | 1 cut(s) | 433 |
| EcoO65I | GGTNACC | 1 cut(s) | 433 |
| EcoRII | CCWGG | 1 cut(s) | 198 |
| EcoRV | GATATC | 1 cut(s) | 303 |
| FaeI | CATG | 1 cut(s) | 104 |
| FatI | CATG | 1 cut(s) | 100 |
| Fnu4HI | GCNGC | 1 cut(s) | 411 |
| FokI | GGATG | 1 cut(s) | 205 |
| Fsp4HI | GCNGC | 1 cut(s) | 411 |
| FspBI | CTAG | 6 cut(s) | 68, 80, 141, 147, 248, 455 |
| GluI | GCNGC | 1 cut(s) | 411 |
| GsaI | CCCAGC | 1 cut(s) | 125 |
| HaeIII | GGCC | 2 cut(s) | 197, 263 |
| HapII | CCGG | 1 cut(s) | 348 |
| Hin1II | CATG | 1 cut(s) | 104 |
| HincII | GTYRAC | 1 cut(s) | 132 |
| HindII | GTYRAC | 1 cut(s) | 132 |
| HinfI | GANTC | 1 cut(s) | 323 |
| HpaII | CCGG | 1 cut(s) | 348 |
| Hpy166II | GTNNAC | 4 cut(s) | 132, 460, 541, 607 |
| Hpy188I | TCNGA | 3 cut(s) | 226, 300, 307 |
| Hpy188III | TCNNGA | 3 cut(s) | 49, 486, 566 |
| Hpy8I | GTNNAC | 4 cut(s) | 132, 460, 541, 607 |
| HpyAV | CCTTC | 1 cut(s) | 517 |
| HpyCH4III | ACNGT | 2 cut(s) | 174, 538 |
| HpyCH4V | TGCA | 4 cut(s) | 15, 170, 413, 507 |
| HpyF3I | CTNAG | 3 cut(s) | 156, 402, 495 |
| Hsp92II | CATG | 1 cut(s) | 104 |
| Kzo9I | GATC | 4 cut(s) | 115, 215, 445, 549 |
| LpnPI | CCDG | 7 cut(s) | 135, 185, 212, 277, 321, 361, 364 |
| Lsp1109I | GCAGC | 1 cut(s) | 397 |
| LweI | GCATC | 1 cut(s) | 384 |
| MaeI | CTAG | 6 cut(s) | 68, 80, 141, 147, 248, 455 |
| MaeIII | GTNAC | 1 cut(s) | 433 |
| MalI | GATC | 4 cut(s) | 117, 217, 447, 551 |
| MboI | GATC | 4 cut(s) | 115, 215, 445, 549 |
| MboII | GAAGA | 4 cut(s) | 125, 223, 581, 584 |
| MflI | RGATCY | 2 cut(s) | 115, 215 |
| MhlI | GDGCHC | 1 cut(s) | 343 |
| MlsI | TGGCCA | 1 cut(s) | 263 |
| MluCI | AATT | 5 cut(s) | 10, 71, 257, 327, 579 |
| MluNI | TGGCCA | 1 cut(s) | 263 |
| MnlI | CCTC | 1 cut(s) | 280 |
| Mox20I | TGGCCA | 1 cut(s) | 263 |
| MscI | TGGCCA | 1 cut(s) | 263 |
| MseI | TTAA | 6 cut(s) | 9, 33, 234, 276, 582, 615 |
| Msp20I | TGGCCA | 1 cut(s) | 263 |
| MspI | CCGG | 1 cut(s) | 348 |
| MspR9I | CCNGG | 1 cut(s) | 200 |
| MvaI | CCWGG | 1 cut(s) | 200 |
| NdeII | GATC | 4 cut(s) | 115, 215, 445, 549 |
| NlaIII | CATG | 1 cut(s) | 104 |
| NspI | RCATGY | 1 cut(s) | 104 |
| PfeI | GAWTC | 1 cut(s) | 323 |
| PkrI | GCNGC | 1 cut(s) | 412 |
| Psp6I | CCWGG | 1 cut(s) | 198 |
| PspEI | GGTNACC | 1 cut(s) | 433 |
| PspFI | CCCAGC | 1 cut(s) | 121 |
| PspGI | CCWGG | 1 cut(s) | 198 |
| PspPI | GGNCC | 1 cut(s) | 196 |
| PsuI | RGATCY | 2 cut(s) | 115, 215 |
| RsaI | GTAC | 1 cut(s) | 272 |
| RsaNI | GTAC | 1 cut(s) | 271 |
| SaqAI | TTAA | 6 cut(s) | 9, 33, 234, 276, 582, 615 |
| SatI | GCNGC | 1 cut(s) | 411 |
| Sau3AI | GATC | 4 cut(s) | 115, 215, 445, 549 |
| Sau96I | GGNCC | 1 cut(s) | 196 |
| ScaI | AGTACT | 1 cut(s) | 272 |
| ScrFI | CCNGG | 1 cut(s) | 200 |
| SduI | GDGCHC | 1 cut(s) | 343 |
| SetI | ASST | 5 cut(s) | 69, 157, 340, 465, 549 |
| SfaNI | GCATC | 1 cut(s) | 384 |
| SfcI | CTRYAG | 1 cut(s) | 333 |
| Sse9I | AATT | 5 cut(s) | 10, 71, 257, 327, 579 |
| SspI | AATATT | 1 cut(s) | 283 |
| SspMI | CTAG | 6 cut(s) | 68, 80, 141, 147, 248, 455 |
| StyD4I | CCNGG | 1 cut(s) | 198 |
| TaaI | ACNGT | 2 cut(s) | 174, 538 |
| TaqI | TCGA | 1 cut(s) | 487 |
| TasI | AATT | 5 cut(s) | 10, 71, 257, 327, 579 |
| TatI | WGTACW | 1 cut(s) | 270 |
| TfiI | GAWTC | 1 cut(s) | 323 |
| Tru1I | TTAA | 6 cut(s) | 9, 33, 234, 276, 582, 615 |
| Tru9I | TTAA | 6 cut(s) | 9, 33, 234, 276, 582, 615 |
| TscAI | CASTG | 1 cut(s) | 179 |
| TseI | GCWGC | 1 cut(s) | 410 |
| TspDTI | ATGAA | 2 cut(s) | 126, 224 |
| TspRI | CASTG | 1 cut(s) | 179 |
| XceI | RCATGY | 1 cut(s) | 104 |
| XspI | CTAG | 6 cut(s) | 68, 80, 141, 147, 248, 455 |
| ZrmI | AGTACT | 1 cut(s) | 272 |