Rorug07G0090900

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000077
Physical Location & Seq
Reverse (-)
7113905 .. 7127806
13902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0090900.1

Sequence Viewer

Length: 2187 bp
ATGTTCAGGTTGCGTTTGGTTCAGCTTTTACTTCATGAAACTCTAGTTTTGGTGATGGAGGTATTGCACTGCAAGGTTGAGGAAGCTGTATTACTGAACTTCAAAAGTGTCAGGGCGGTTTGTGAGGAACTTGTGAAATATGGAGACCTGGAGAATCAAGCAGTTATGGATGAGGCAAGATCTCAACAGGCTGCCTCCATGACAGAATTTCATTGGCTAGGTCATAGATTTCCAATTTCGAATGCAAAAACTCGGGTTTCTATTTTAAAAGCTCAAGACTTGGAGAAAGATGTACTTTGTTCATCAGCTAATCCACTCCCTACAGAGAAAAGGCTAGCCATTTTGACAAAATTTTCACTGCATACCGTGAGGCAAGGAGCTGCATTCACAGTGTTTTGGTATGTCAGTGCAGGTAGTTGTGAAAATGTCCAAGATGACTTGAATGGCCTTGATAAAGCTGTTAGTACTGTATTAGGACAACGGACCATTGAGCGTAACCTACTTTTGGTTAGCATTGTGAAGAGTAAACTTACGAAGCGACAAGATGACAAAAAGGAGAGAACTACGAAGCCAGAAGAGCTTGTCTGCTTGTATGATCTCCTATTACAGAATACAGCTGACCTTTCAGATTTAGTCAGTTCGGGACGAGAGAAAACATCAGAGGAAGTGGCATTTGCTGCAGAATGTGAGCTTAAAAGTTTGGCTTTCCGAGCAGAGAGGTGTTTCTTTTTGGGTAGAACATACGGTTTGGCTGGTAAGAGGGTGGAAGCATATATTGCCGTGCTCGCACACTTGCTGAGGATGCCCTACAAAAATTTAAAGCTGTTGATAAGGCTGATCAGGAATCATGGAGGAGCTGCTCCTGAAAATCTCTCAAAACAGATTTCTAACATCCATATATCTGGAGTTGACACGAAGCTGAAGAAAGACGAGGATTGGGGAAAGATGAGATTTTGGAAGTGGGTTTTTGCTGGGCTTGTTTGTGCTGCCTTGGTTGTGGAGATTGGTTCTGGGGAGCAAGCTCGAACTGAGAGGATTTCAGGTAGTGCTGGTGATGTCTTGGATGATGATCCAGTGGGAAGGTTGAAAGTTTTTGTTTATGAGCTTCCAAGCAAATACAATAAGAAGATTCTGCAGAAGGATCCGAGATGCCTTAACCATATGTTTGCTGCTGAGATCTACATGCATCGTTTTCTCCTATCTAGCCCTGTCCGAACCCTTAATCCTGAGGAGGCTGATTGGTTTTATACTCCTGTATACACCACTTGTGATCTGACCCCAAACGGCCTTCCTTTGCCTTTCAAGTCACCACGGATGATGAGAAGTGCAATACAACTTATTTCTTCAAATTGGCCTTATTGGAACCGCACCGAAGGGGCTGATCACTTTTTTGTGGTGCCTCATGACTTTGCAGCATGCTTTCATTATCAGGAAGAGAAGGCAATTGAAAGAGGAATTCTTCCCTTGCTCCAACTTGCAACCTTGGTTCAGACTTTTGGGCAACGGAATCATGTTTGCTTGAAAGAGGGCTCAATTACTGTTCCTCCATATGCCCCTCCGCAGAAAATGCAGACCCACCTAATTCCTGAGAAAACTCCTAGATCCATCTTTGTTTACTTCCGAGGACTATTTTATGATGTAGGAAATGATCCAGAAGGTGGCTATTATGCAAGAGGTGCAAGAGCAGCAGTGTGGGAGAACTTCAAAGACAATCCGCTTTTTGACATTTCCACAGAGCATCCCACCACATACTATGAGGACATGCAACGTGCAGTCTTTTGTTTATGCCCACTTGGCTGGGCTCCTTGGAGCCCGAGATTGGTTGAAGCAGTGATTTTCGGTTGCATTCCTGTTATCATAGCAGATGACATTGTTCTACCCTTTGCTGATGCAATTCCATGGGAAGAAATTGGTGTGTATATAGATGAGAAGGATGTTCCCAACTTGGACACCATACTCACTTCAATCCCACCAGAGCTGATACTGAGGAAGCAGAGATTACTTGCCAACCCTTCAATGAAGCAAGCTATGTTGTTCCCACAACCCGCCGAACCGGGTGATGCTTTTCATCAAGTTCTTAATGGACTGGCACGAAAATTGCCTCACGACCCTAGTGTTTACTTGAAGCCAGGTCAGAAGATCCTAAATTGGACCGCAGGTCCAGTTGGTGACCTCAAGCCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

728

Amino Acids

82.43

Weight (kDa)

7.01

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP68 PF16969 53 - 258 9.6e-30 RNA-binding signal recognition particle 68
Exostosin_GT47 PF03016 361 - 656 8.7e-75 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53670
fragaria_vesca FvH4_1g12751 FvH4_1g13491 FvH4_1g13491 FvH4_1g16302 FvH4_1g16303 FvH4_1g29161 FvH4_1g29941 FvH4_2g02290 FvH4_2g05985 FvH4_2g15841 FvH4_2g18261 FvH4_2g22761 FvH4_2g22761 FvH4_2g22761 FvH4_3g13432 FvH4_3g14801 FvH4_3g28581 FvH4_3g30611 FvH4_3g30611 FvH4_3g30611 FvH4_3g32571 FvH4_3g32571 FvH4_3g32571 FvH4_3g33631 FvH4_3g36663 FvH4_3g36664 FvH4_4g00961 FvH4_4g17672 FvH4_5g13441 FvH4_5g30231 FvH4_5g39263 FvH4_6g06661 FvH4_6g06662 FvH4_6g40841 FvH4_7g00732 FvH4_7g11331 FvH4_7g12361
malus_domestica MD02G1100700.v1.1 MD02G1280000.v1.1 MD03G1045100.v1.1 MD04G1043300.v1.1 MD05G1061800.v1.1 MD05G1118300.v1.1 MD05G1334900.v1.1 MD08G1232100.v1.1 MD10G1202700.v1.1 MD11G1016600.v1.1 MD11G1271900.v1.1 MD15G1002900.v1.1 MD15G1059300.v1.1
prunus_persica Prupe.1G445900_v2.0.a1 Prupe.4G244000_v2.0.a1 Prupe.6G221400_v2.0.a1 Prupe.6G301400_v2.0.a1 Prupe.7G031600_v2.0.a1 Prupe.8G017100_v2.0.a1
pyrus_communis pycom01g08140 pycom01g19130 pycom02g09810 pycom03g12420 pycom05g09140 pycom05g22780 pycom06g17440 pycom07g04850 pycom07g08300 pycom08g09110 pycom08g10760 pycom09g15580 pycom09g18260 pycom09g18400 pycom11g07380 pycom11g20370 pycom12g01630 pycom12g11730 pycom13g21040 pycom14g00290 pycom14g10520 pycom15g16640 pycom15g18720 pycom15g24540 pycom15g26360 pycom16g08100 pycom16g09950 pycom16g11700 pycom16g19690 pycom17g20400
rosa_chinensis RchiOBHm_Chr1g0317481 RchiOBHm_Chr1g0322601 RchiOBHm_Chr1g0324761 RchiOBHm_Chr1g0335001 RchiOBHm_Chr1g0336961 RchiOBHm_Chr1g0345341 RchiOBHm_Chr1g0348501 RchiOBHm_Chr1g0352591 RchiOBHm_Chr1g0354901 RchiOBHm_Chr1g0365141 RchiOBHm_Chr1g0365511 RchiOBHm_Chr1g0368471 RchiOBHm_Chr1g0373471 RchiOBHm_Chr1g0373951 RchiOBHm_Chr1g0375621 RchiOBHm_Chr1g0378491 RchiOBHm_Chr1g0383431 RchiOBHm_Chr2g0086291 RchiOBHm_Chr2g0096681 RchiOBHm_Chr2g0117391 RchiOBHm_Chr2g0121511 RchiOBHm_Chr2g0128511 RchiOBHm_Chr2g0159591 RchiOBHm_Chr2g0173271 RchiOBHm_Chr3g0453771 RchiOBHm_Chr3g0462071 RchiOBHm_Chr3g0467151 RchiOBHm_Chr3g0468531 RchiOBHm_Chr3g0478981 RchiOBHm_Chr3g0488371 RchiOBHm_Chr3g0496001 RchiOBHm_Chr3g0496651 RchiOBHm_Chr4g0390941 RchiOBHm_Chr4g0431251 RchiOBHm_Chr4g0441691 RchiOBHm_Chr5g0001181 RchiOBHm_Chr5g0001671 RchiOBHm_Chr5g0021461 RchiOBHm_Chr5g0045101 RchiOBHm_Chr5g0045461 RchiOBHm_Chr5g0063421 RchiOBHm_Chr5g0068061 RchiOBHm_Chr5g0069541 RchiOBHm_Chr5g0073131 RchiOBHm_Chr5g0076631 RchiOBHm_Chr5g0079181 RchiOBHm_Chr5g0082051 RchiOBHm_Chr6g0248451 RchiOBHm_Chr6g0255561 RchiOBHm_Chr6g0266491 RchiOBHm_Chr6g0268111 RchiOBHm_Chr6g0304521 RchiOBHm_Chr6g0306511 RchiOBHm_Chr7g0181641 RchiOBHm_Chr7g0181791 RchiOBHm_Chr7g0188321 RchiOBHm_Chr7g0194951 RchiOBHm_Chr7g0195071 RchiOBHm_Chr7g0199671 RchiOBHm_Chr7g0204631 RchiOBHm_Chr7g0231771 RchiOBHm_Chr7g0231831 RchiOBHm_Chr7g0242511
rosa_laevigata RLG00000015596 RLG00000021778 RLG00000028187
rosa_multiflora Rmu_co8285397.1_g000001 Rmu_co8301931.1_g000001 Rmu_co8376351.1_g000001 Rmu_co8412043.1_g000001 Rmu_sc0000079.1_g000006 Rmu_sc0000160.1_g000007 Rmu_sc0000208.1_g000006 Rmu_sc0000258.1_g000016 Rmu_sc0000295.1_g000008 Rmu_sc0000302.1_g000025 Rmu_sc0000423.1_g000039 Rmu_sc0000441.1_g000040 Rmu_sc0000538.1_g000074 Rmu_sc0000603.1_g000019 Rmu_sc0000611.1_g000018 Rmu_sc0000729.1_g000002 Rmu_sc0000837.1_g000044 Rmu_sc0000903.1_g000015 Rmu_sc0000924.1_g000029 Rmu_sc0001173.1_g000021 Rmu_sc0001289.1_g000004 Rmu_sc0001347.1_g000005 Rmu_sc0001464.1_g000020 Rmu_sc0001618.1_g000015 Rmu_sc0002014.1_g000002 Rmu_sc0002047.1_g000002 Rmu_sc0002160.1_g000029 Rmu_sc0002310.1_g000011 Rmu_sc0002416.1_g000002 Rmu_sc0002417.1_g000008 Rmu_sc0002445.1_g000008 Rmu_sc0002691.1_g000026 Rmu_sc0002700.1_g000021 Rmu_sc0002748.1_g000032 Rmu_sc0002792.1_g000048 Rmu_sc0002831.1_g000012 Rmu_sc0002928.1_g000025 Rmu_sc0002956.1_g000001 Rmu_sc0003170.1_g000039 Rmu_sc0003232.1_g000024 Rmu_sc0003391.1_g000014 Rmu_sc0003600.1_g000009 Rmu_sc0003630.1_g000064 Rmu_sc0003633.1_g000035 Rmu_sc0003802.1_g000001 Rmu_sc0003881.1_g000001 Rmu_sc0003989.1_g000001 Rmu_sc0004208.1_g000021 Rmu_sc0004815.1_g000004 Rmu_sc0004821.1_g000002 Rmu_sc0005237.1_g000004 Rmu_sc0005638.1_g000006 Rmu_sc0005996.1_g000004 Rmu_sc0006604.1_g000005 Rmu_sc0007023.1_g000007 Rmu_sc0007084.1_g000004 Rmu_sc0007239.1_g000001 Rmu_sc0007338.1_g000010 Rmu_sc0007398.1_g000004 Rmu_sc0007630.1_g000001 Rmu_sc0008067.1_g000001 Rmu_sc0008114.1_g000001 Rmu_sc0008623.1_g000008 Rmu_sc0009777.1_g000010 Rmu_sc0012719.1_g000001 Rmu_sc0014173.1_g000001 Rmu_sc0015338.1_g000002 Rmu_sc0015804.1_g000002 Rmu_sc0023779.1_g000001 Rmu_sc0024140.1_g000001 Rmu_sc0024833.1_g000006 Rmu_ssc0000087.1_g000013 Rmu_ssc0000400.1_g000088 Rmu_ssc0000400.1_g000089
rosa_roxburghii Rroxscaffold_175G00432540 Rroxscaffold_1G00003260 Rroxscaffold_1G00032490 Rroxscaffold_1G00035100 Rroxscaffold_1G00051960 Rroxscaffold_1G00056120 Rroxscaffold_2G00091260 Rroxscaffold_2G00097580 Rroxscaffold_2G00100910 Rroxscaffold_2G00101000 Rroxscaffold_2G00104370 Rroxscaffold_2G00154020 Rroxscaffold_3G00219010 Rroxscaffold_3G00241360 Rroxscaffold_3G00265190 Rroxscaffold_4G00328620 Rroxscaffold_5G00338660 Rroxscaffold_5G00339430 Rroxscaffold_5G00346490 Rroxscaffold_5G00360740 Rroxscaffold_5G00373490 Rroxscaffold_5G00373950 Rroxscaffold_5G00379290 Rroxscaffold_6G00390000 Rroxscaffold_6G00406560 Rroxscaffold_7G00163660 Rroxscaffold_7G00172220 Rroxscaffold_7G00182760 Rroxscaffold_7G00217680 Rroxscaffold_7G00217910
rosa_rugosa Rorug03G0299400 Rorug04G0048800 Rorug05G0503600 Rorug07G0090800 Rorug07G0090900 Rorug07G0294700
rosa_samantha Rh3BG243300 Rh4BG398100
rosa_wichuraiana Rw0G005950 Rw0G023070 Rw1G003680 Rw1G004130 Rw1G007910 Rw1G013940 Rw1G018710 Rw1G022140 Rw1G031170 Rw1G041420 Rw2G024950 Rw2G045000 Rw2G049360 Rw3G007370 Rw3G009120 Rw3G011780 Rw3G027830 Rw4G001510 Rw4G003110 Rw4G008370 Rw4G022100 Rw4G035490 Rw5G001650 Rw5G002000 Rw5G002590 Rw5G017930 Rw5G020530 Rw5G024010 Rw5G024710 Rw5G025620 Rw5G027980 Rw5G030200 Rw5G036530 Rw5G044700 Rw6G006860 Rw6G018940 Rw6G019810 Rw6G029740 Rw7G009360 Rw7G017280 Rw7G017540 Rw7G020090 Rw7G022500 Rw7G031420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 401, 2147
AccB1I GGYRCC 1 cut(s) 1396
AccB7I CCANNNNNTGG 1 cut(s) 1658
AccI GTMKAC 1 cut(s) 1257
AciI CCGC 6 cut(s) 116, 1366, 1559, 1715, 2046, 2154
AclWI GGATC 6 cut(s) 1064, 1136, 1149, 1596, 1643, 2134
AcsI RAATTY 4 cut(s) 206, 350, 814, 1455
AcuI CTGAAG 1 cut(s) 941
AfaI GTAC 2 cut(s) 294, 466
AfiI CCNNNNNNNGG 3 cut(s) 505, 1658, 1819
AhdI GACNNNNNGTC 1 cut(s) 2157
AjnI CCWGG 2 cut(s) 147, 2128
AloI GAACNNNNNNTCC 2 cut(s) 1207, 1239
Alw21I GWGCWC 1 cut(s) 786
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 6 cut(s) 1064, 1136, 1149, 1596, 1643, 2134
Ama87I CYCGRG 2 cut(s) 252, 1813
AoxI GGCC 3 cut(s) 445, 1285, 1352
ApeKI GCWGC 8 cut(s) 191, 380, 677, 857, 986, 1169, 1412, 1685
ApoI RAATTY 4 cut(s) 206, 350, 814, 1455
AspS9I GGNCC 3 cut(s) 483, 2151, 2159
AsuC2I CCSGG 1 cut(s) 2055
AsuHPI GGTGA 5 cut(s) 64, 1064, 1299, 2069, 2180
AsuII TTCGAA 1 cut(s) 239
AsuNHI GCTAGC 1 cut(s) 334
AvaI CYCGRG 2 cut(s) 252, 1813
AvaII GGWCC 3 cut(s) 483, 2151, 2159
AxyI CCTNAGG 1 cut(s) 1227
BamHI GGATCC 1 cut(s) 1141
BanI GGYRCC 1 cut(s) 1396
BanII GRGCYC 3 cut(s) 1532, 1804, 1814
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
Bbv12I GWGCWC 1 cut(s) 786
BbvCI CCTCAGC 1 cut(s) 797
BbvI GCAGC 8 cut(s) 178, 367, 664, 844, 973, 1156, 1424, 1697
BccI CCATC 2 cut(s) 49, 1613
BceAI ACGGC 2 cut(s) 764, 1300
BciT130I CCWGG 2 cut(s) 149, 2130
BclI TGATCA 2 cut(s) 837, 1381
BcnI CCSGG 1 cut(s) 2055
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 6 cut(s) 44, 218, 335, 1203, 1599, 2112
BfmI CTRYAG 3 cut(s) 321, 678, 1133
BfuAI ACCTGC 2 cut(s) 401, 2147
BglI GCCNNNNNGGC 1 cut(s) 1794
BglII AGATCT 2 cut(s) 179, 1176
BisI GCNGC 8 cut(s) 192, 381, 678, 858, 987, 1170, 1413, 1686
BlsI GCNGC 8 cut(s) 193, 382, 679, 859, 988, 1171, 1414, 1687
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 3 cut(s) 149, 2055, 2130
Bme18I GGWCC 3 cut(s) 483, 2151, 2159
BmeRI GACNNNNNGTC 1 cut(s) 2157
BmeT110I CYCGRG 2 cut(s) 252, 1813
BmgT120I GGNCC 3 cut(s) 483, 2151, 2159
BmiI GGNNCC 5 cut(s) 1143, 1364, 1398, 1803, 1811
BmrFI CCNGG 3 cut(s) 149, 2055, 2130
BmsI GCATC 6 cut(s) 792, 1139, 1195, 1747, 1879, 2050
BmtI GCTAGC 1 cut(s) 338
BpmI CTGGAG 2 cut(s) 170, 924
Bpu10I CCTNAGC 1 cut(s) 797
Bpu14I TTCGAA 1 cut(s) 239
BpuEI CTTGAG 2 cut(s) 258, 2159
BpuMI CCSGG 1 cut(s) 2055
BsaBI GATNNNNATC 1 cut(s) 1068
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 7 cut(s) 990, 1310, 1482, 1621, 1805, 1898, 2180
BsaXI ACNNNNNCTCC 2 cut(s) 1528, 1558
Bsc4I CCNNNNNNNGG 3 cut(s) 505, 1658, 1819
Bse1I ACTGG 3 cut(s) 1073, 2091, 2162
Bse21I CCTNAGG 1 cut(s) 1227
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 2 cut(s) 149, 2130
BseDI CCNNGG 7 cut(s) 990, 1310, 1482, 1621, 1805, 1898, 2180
BseGI GGATG 7 cut(s) 175, 807, 891, 1069, 1320, 1738, 1939
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 3 cut(s) 505, 1658, 1819
BseMII CTCAG 6 cut(s) 788, 1020, 1164, 1218, 1578, 1976
BseNI ACTGG 3 cut(s) 1073, 2091, 2162
BseRI GAGGAG 2 cut(s) 867, 1244
BseXI GCAGC 8 cut(s) 178, 367, 664, 844, 973, 1156, 1424, 1697
BseYI CCCAGC 2 cut(s) 971, 1797
BsgI GTGCAG 2 cut(s) 429, 1791
BshFI GGCC 3 cut(s) 447, 1287, 1354
BshNI GGYRCC 1 cut(s) 1396
BsiHKAI GWGCWC 1 cut(s) 786
BsiHKCI CYCGRG 2 cut(s) 252, 1813
BsiSI CCGG 1 cut(s) 2054
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 3 cut(s) 505, 1658, 1819
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 657
BsmI GAATGC 3 cut(s) 247, 383, 1845
BsnI GGCC 3 cut(s) 447, 1287, 1354
Bso31I GGTCTC 1 cut(s) 138
BsoBI CYCGRG 2 cut(s) 252, 1813
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 4 cut(s) 786, 1532, 1804, 1814
Bsp19I CCATGG 1 cut(s) 1898
BspACI CCGC 6 cut(s) 116, 1366, 1559, 1715, 2046, 2154
BspANI GGCC 3 cut(s) 447, 1287, 1354
BspCNI CTCAG 6 cut(s) 789, 1021, 1165, 1219, 1579, 1977
BspHI TCATGA 2 cut(s) 34, 1402
BspLI GGNNCC 5 cut(s) 1143, 1364, 1398, 1803, 1811
BspMAI CTGCAG 2 cut(s) 682, 1137
BspMI ACCTGC 2 cut(s) 401, 2147
BspOI GCTAGC 1 cut(s) 338
BspPI GGATC 6 cut(s) 1064, 1136, 1149, 1596, 1643, 2134
BspQI GCTCTTC 1 cut(s) 570
BspT104I TTCGAA 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 1396
BspTNI GGTCTC 1 cut(s) 138
BsrI ACTGG 3 cut(s) 1073, 2091, 2162
BssECI CCNNGG 7 cut(s) 990, 1310, 1482, 1621, 1805, 1898, 2180
BssNAI GTATAC 1 cut(s) 1258
BssT1I CCWWGG 5 cut(s) 990, 1482, 1805, 1898, 2180
Bst1107I GTATAC 1 cut(s) 1258
Bst2UI CCWGG 2 cut(s) 149, 2130
Bst4CI ACNGT 5 cut(s) 367, 391, 469, 746, 1540
Bst6I CTCTTC 3 cut(s) 515, 570, 1428
BstAPI GCANNNNNTGC 4 cut(s) 677, 776, 1567, 1676
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 5 cut(s) 336, 786, 1020, 1417, 2025
BstDEI CTNAG 6 cut(s) 797, 1029, 1173, 1227, 1587, 1985
BstDSI CCRYGG 2 cut(s) 1310, 1898
BstEII GGTNACC 1 cut(s) 2168
BstF5I GGATG 7 cut(s) 175, 807, 891, 1069, 1320, 1738, 1939
BstMAI GTCTC 1 cut(s) 138
BstNI CCWGG 2 cut(s) 149, 2130
BstNSI RCATGY 3 cut(s) 1186, 1419, 1765
BstPI GGTNACC 1 cut(s) 2168
BstSCI CCNGG 3 cut(s) 147, 2053, 2128
BstSFI CTRYAG 3 cut(s) 321, 678, 1133
BstV1I GCAGC 8 cut(s) 178, 367, 664, 844, 973, 1156, 1424, 1697
BstX2I RGATCY 5 cut(s) 179, 1141, 1176, 1601, 2139
BstXI CCANNNNNNTGG 2 cut(s) 902, 1797
BstYI RGATCY 5 cut(s) 179, 1141, 1176, 1601, 2139
BstZ17I GTATAC 1 cut(s) 1258
Bsu36I CCTNAGG 1 cut(s) 1227
BsuRI GGCC 3 cut(s) 447, 1287, 1354
BtgI CCRYGG 2 cut(s) 1310, 1898
BtsCI GGATG 7 cut(s) 175, 807, 891, 1069, 1320, 1738, 1939
BtsI GCAGTG 4 cut(s) 67, 356, 1695, 1836
BtsIMutI CAGTG 7 cut(s) 67, 356, 396, 412, 1080, 1695, 1836
BveI ACCTGC 2 cut(s) 401, 2147
Cac8I GCNNGC 5 cut(s) 336, 786, 1020, 1417, 2025
CciI TCATGA 2 cut(s) 34, 1402
Cfr13I GGNCC 3 cut(s) 483, 2151, 2159
Csp6I GTAC 2 cut(s) 293, 465
CviAII CATG 9 cut(s) 35, 199, 848, 1183, 1403, 1416, 1511, 1762, 1899
CviQI GTAC 2 cut(s) 293, 465
DdeI CTNAG 6 cut(s) 797, 1029, 1173, 1227, 1587, 1985
DraI TTTAAA 2 cut(s) 267, 819
DriI GACNNNNNGTC 1 cut(s) 2157
Eam1104I CTCTTC 3 cut(s) 515, 570, 1428
Eam1105I GACNNNNNGTC 1 cut(s) 2157
EarI CTCTTC 3 cut(s) 515, 570, 1428
Eco130I CCWWGG 5 cut(s) 990, 1482, 1805, 1898, 2180
Eco24I GRGCYC 3 cut(s) 1532, 1804, 1814
Eco31I GGTCTC 1 cut(s) 138
Eco47I GGWCC 3 cut(s) 483, 2151, 2159
Eco57I CTGAAG 1 cut(s) 941
Eco81I CCTNAGG 1 cut(s) 1227
Eco88I CYCGRG 2 cut(s) 252, 1813
Eco91I GGTNACC 1 cut(s) 2168
EcoO65I GGTNACC 1 cut(s) 2168
EcoRI GAATTC 1 cut(s) 1455
EcoRII CCWGG 2 cut(s) 147, 2128
EcoT14I CCWWGG 5 cut(s) 990, 1482, 1805, 1898, 2180
EcoT22I ATGCAT 1 cut(s) 1188
EcoT38I GRGCYC 3 cut(s) 1532, 1804, 1814
ErhI CCWWGG 5 cut(s) 990, 1482, 1805, 1898, 2180
FaeI CATG 9 cut(s) 38, 202, 851, 1186, 1406, 1419, 1514, 1765, 1902
FalI AAGNNNNNCTT 4 cut(s) 279, 311, 688, 720
FaqI GGGAC 1 cut(s) 657
FatI CATG 9 cut(s) 34, 198, 847, 1182, 1402, 1415, 1510, 1761, 1898
FauI CCCGC 1 cut(s) 2053
FauNDI CATATG 2 cut(s) 1161, 1549
FbaI TGATCA 2 cut(s) 837, 1381
FblI GTMKAC 1 cut(s) 1257
Fnu4HI GCNGC 8 cut(s) 192, 381, 678, 858, 987, 1170, 1413, 1686
FokI GGATG 7 cut(s) 182, 814, 878, 1076, 1327, 1725, 1946
FriOI GRGCYC 3 cut(s) 1532, 1804, 1814
Fsp4HI GCNGC 8 cut(s) 192, 381, 678, 858, 987, 1170, 1413, 1686
FspBI CTAG 6 cut(s) 44, 218, 335, 1203, 1599, 2112
GluI GCNGC 8 cut(s) 192, 381, 678, 858, 987, 1170, 1413, 1686
GsaI CCCAGC 2 cut(s) 975, 1801
GsuI CTGGAG 2 cut(s) 170, 924
HaeIII GGCC 3 cut(s) 447, 1287, 1354
HapII CCGG 1 cut(s) 2054
Hin1II CATG 9 cut(s) 38, 202, 851, 1186, 1406, 1419, 1514, 1765, 1902
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HinfI GANTC 4 cut(s) 154, 844, 1129, 1507
HpaII CCGG 1 cut(s) 2054
HphI GGTGA 5 cut(s) 64, 1064, 1299, 2069, 2180
Hpy166II GTNNAC 5 cut(s) 527, 910, 1258, 1615, 2119
Hpy188I TCNGA 9 cut(s) 628, 661, 710, 1146, 1214, 1275, 1491, 1622, 2136
Hpy8I GTNNAC 5 cut(s) 527, 910, 1258, 1615, 2119
HpyAV CCTTC 8 cut(s) 1074, 1132, 1298, 1367, 1432, 1649, 1924, 2022
HpyCH4III ACNGT 5 cut(s) 367, 391, 469, 746, 1540
HpyCH4IV ACGT 1 cut(s) 1768
HpyF3I CTNAG 6 cut(s) 797, 1029, 1173, 1227, 1587, 1985
HpySE526I ACGT 1 cut(s) 1768
Hsp92II CATG 9 cut(s) 38, 202, 851, 1186, 1406, 1419, 1514, 1765, 1902
Ksp22I TGATCA 2 cut(s) 837, 1381
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 7 cut(s) 377, 854, 865, 1015, 1473, 1807, 1809
Lsp1109I GCAGC 8 cut(s) 178, 367, 664, 844, 973, 1156, 1424, 1697
LweI GCATC 6 cut(s) 792, 1139, 1195, 1747, 1879, 2050
MaeI CTAG 6 cut(s) 44, 218, 335, 1203, 1599, 2112
MaeII ACGT 1 cut(s) 1768
MaeIII GTNAC 3 cut(s) 494, 1305, 2168
MboII GAAGA 9 cut(s) 532, 587, 934, 1138, 1335, 1445, 1451, 1916, 2149
MfeI CAATTG 1 cut(s) 1443
MflI RGATCY 5 cut(s) 179, 1141, 1176, 1601, 2139
MhlI GDGCHC 4 cut(s) 786, 1532, 1804, 1814
MmeI TCCRAC 1 cut(s) 1495
Mph1103I ATGCAT 1 cut(s) 1188
MseI TTAA 6 cut(s) 266, 693, 818, 1155, 1221, 2079
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 1 cut(s) 2054
MspR9I CCNGG 3 cut(s) 149, 2055, 2130
MunI CAATTG 1 cut(s) 1443
Mva1269I GAATGC 3 cut(s) 247, 383, 1845
MvaI CCWGG 2 cut(s) 149, 2130
NciI CCSGG 1 cut(s) 2055
NcoI CCATGG 1 cut(s) 1898
NdeI CATATG 2 cut(s) 1161, 1549
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 9 cut(s) 38, 202, 851, 1186, 1406, 1419, 1514, 1765, 1902
NlaIV GGNNCC 5 cut(s) 1143, 1364, 1398, 1803, 1811
NmuCI GTSAC 2 cut(s) 1305, 2168
NsiI ATGCAT 1 cut(s) 1188
NspI RCATGY 3 cut(s) 1186, 1419, 1765
NspV TTCGAA 1 cut(s) 239
PaeI GCATGC 1 cut(s) 1419
PagI TCATGA 2 cut(s) 34, 1402
PciSI GCTCTTC 1 cut(s) 570
PctI GAATGC 3 cut(s) 247, 383, 1845
PfeI GAWTC 4 cut(s) 154, 844, 1129, 1507
PflMI CCANNNNNTGG 1 cut(s) 1658
PkrI GCNGC 8 cut(s) 193, 382, 679, 859, 988, 1171, 1414, 1687
Psp6I CCWGG 2 cut(s) 147, 2128
PspEI GGTNACC 1 cut(s) 2168
PspFI CCCAGC 2 cut(s) 971, 1797
PspGI CCWGG 2 cut(s) 147, 2128
PspN4I GGNNCC 5 cut(s) 1143, 1364, 1398, 1803, 1811
PspPI GGNCC 3 cut(s) 483, 2151, 2159
PstI CTGCAG 2 cut(s) 682, 1137
PsuI RGATCY 5 cut(s) 179, 1141, 1176, 1601, 2139
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 2 cut(s) 294, 466
RsaNI GTAC 2 cut(s) 293, 465
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 6 cut(s) 266, 693, 818, 1155, 1221, 2079
SatI GCNGC 8 cut(s) 192, 381, 678, 858, 987, 1170, 1413, 1686
Sau96I GGNCC 3 cut(s) 483, 2151, 2159
ScaI AGTACT 1 cut(s) 466
ScrFI CCNGG 3 cut(s) 149, 2055, 2130
SduI GDGCHC 4 cut(s) 786, 1532, 1804, 1814
SfaNI GCATC 6 cut(s) 792, 1139, 1195, 1747, 1879, 2050
SfcI CTRYAG 3 cut(s) 321, 678, 1133
SfuI TTCGAA 1 cut(s) 239
SinI GGWCC 3 cut(s) 483, 2151, 2159
SmlI CTYRAG 2 cut(s) 273, 2174
SmoI CTYRAG 2 cut(s) 273, 2174
SphI GCATGC 1 cut(s) 1419
SsiI CCGC 6 cut(s) 116, 1366, 1559, 1715, 2046, 2154
SspMI CTAG 6 cut(s) 44, 218, 335, 1203, 1599, 2112
StyD4I CCNGG 3 cut(s) 147, 2053, 2128
StyI CCWWGG 5 cut(s) 990, 1482, 1805, 1898, 2180
TaaI ACNGT 5 cut(s) 367, 391, 469, 746, 1540
TaiI ACGT 1 cut(s) 1771
TaqI TCGA 2 cut(s) 239, 1024
TatI WGTACW 2 cut(s) 292, 464
TfiI GAWTC 4 cut(s) 154, 844, 1129, 1507
Tru1I TTAA 6 cut(s) 266, 693, 818, 1155, 1221, 2079
Tru9I TTAA 6 cut(s) 266, 693, 818, 1155, 1221, 2079
TscAI CASTG 7 cut(s) 74, 363, 396, 412, 1080, 1695, 1836
TseFI GTSAC 2 cut(s) 1305, 2168
TseI GCWGC 8 cut(s) 191, 380, 677, 857, 986, 1169, 1412, 1685
Tsp45I GTSAC 2 cut(s) 1305, 2168
TspDTI ATGAA 7 cut(s) 23, 51, 200, 291, 1412, 2033, 2057
TspGWI ACGGA 3 cut(s) 496, 1327, 1519
TspRI CASTG 7 cut(s) 74, 363, 396, 412, 1080, 1695, 1836
Van91I CCANNNNNTGG 1 cut(s) 1658
VpaK11BI GGWCC 3 cut(s) 483, 2151, 2159
XapI RAATTY 4 cut(s) 206, 350, 814, 1455
XceI RCATGY 3 cut(s) 1186, 1419, 1765
XmiI GTMKAC 1 cut(s) 1257
XspI CTAG 6 cut(s) 44, 218, 335, 1203, 1599, 2112
ZrmI AGTACT 1 cut(s) 466
Zsp2I ATGCAT 1 cut(s) 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.