gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 662 |
| AccII | CGCG | 1 cut(s) | 636 |
| AciI | CCGC | 1 cut(s) | 634 |
| AcsI | RAATTY | 2 cut(s) | 101, 455 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 640 |
| AflII | CTTAAG | 1 cut(s) | 158 |
| AgsI | TTSAA | 3 cut(s) | 151, 346, 460 |
| AluBI | AGCT | 8 cut(s) | 122, 202, 223, 506, 514, 547, 596, 647 |
| AluI | AGCT | 8 cut(s) | 122, 202, 223, 506, 514, 547, 596, 647 |
| Alw21I | GWGCWC | 2 cut(s) | 403, 598 |
| Alw44I | GTGCAC | 1 cut(s) | 399 |
| AoxI | GGCC | 1 cut(s) | 270 |
| ApaLI | GTGCAC | 1 cut(s) | 399 |
| ApeKI | GCWGC | 2 cut(s) | 500, 503 |
| ApoI | RAATTY | 2 cut(s) | 101, 455 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 282, 455 |
| AsuHPI | GGTGA | 1 cut(s) | 541 |
| BaeGI | GKGCMC | 1 cut(s) | 403 |
| BanI | GGYRCC | 1 cut(s) | 662 |
| BanII | GRGCYC | 1 cut(s) | 598 |
| BbsI | GAAGAC | 2 cut(s) | 476, 618 |
| Bbv12I | GWGCWC | 2 cut(s) | 403, 598 |
| BbvI | GCAGC | 2 cut(s) | 487, 515 |
| BccI | CCATC | 5 cut(s) | 98, 309, 330, 419, 482 |
| BciVI | GTATCC | 1 cut(s) | 28 |
| BfaI | CTAG | 2 cut(s) | 132, 585 |
| BfmI | CTRYAG | 2 cut(s) | 295, 501 |
| BfrI | CTTAAG | 1 cut(s) | 158 |
| BfuI | GTATCC | 1 cut(s) | 28 |
| BglII | AGATCT | 1 cut(s) | 229 |
| BisI | GCNGC | 2 cut(s) | 501, 504 |
| BlsI | GCNGC | 2 cut(s) | 502, 505 |
| BmiI | GGNNCC | 1 cut(s) | 664 |
| BmsI | GCATC | 2 cut(s) | 60, 241 |
| BpiI | GAAGAC | 2 cut(s) | 476, 618 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 580, 612 |
| Bpu10I | CCTNAGC | 1 cut(s) | 63 |
| BsaBI | GATNNNNATC | 1 cut(s) | 209 |
| BsaJI | CCNNGG | 1 cut(s) | 599 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 640 |
| Bse8I | GATNNNNATC | 1 cut(s) | 209 |
| BseDI | CCNNGG | 1 cut(s) | 599 |
| BseJI | GATNNNNATC | 1 cut(s) | 209 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 640 |
| BseMII | CTCAG | 1 cut(s) | 215 |
| BseRI | GAGGAG | 1 cut(s) | 604 |
| BseSI | GKGCMC | 1 cut(s) | 403 |
| BseXI | GCAGC | 2 cut(s) | 487, 515 |
| Bsh1236I | CGCG | 1 cut(s) | 636 |
| BshFI | GGCC | 1 cut(s) | 272 |
| BshNI | GGYRCC | 1 cut(s) | 662 |
| BsiHKAI | GWGCWC | 2 cut(s) | 403, 598 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 640 |
| BsnI | GGCC | 1 cut(s) | 272 |
| Bsp1286I | GDGCHC | 2 cut(s) | 403, 598 |
| Bsp143I | GATC | 3 cut(s) | 229, 370, 522 |
| BspACI | CCGC | 1 cut(s) | 634 |
| BspANI | GGCC | 1 cut(s) | 272 |
| BspCNI | CTCAG | 1 cut(s) | 216 |
| BspFNI | CGCG | 1 cut(s) | 636 |
| BspLI | GGNNCC | 1 cut(s) | 664 |
| BspMAI | CTGCAG | 1 cut(s) | 505 |
| BspT107I | GGYRCC | 1 cut(s) | 662 |
| BspTI | CTTAAG | 1 cut(s) | 158 |
| BssECI | CCNNGG | 1 cut(s) | 599 |
| BssMI | GATC | 3 cut(s) | 229, 370, 522 |
| BssT1I | CCWWGG | 1 cut(s) | 599 |
| Bst4CI | ACNGT | 1 cut(s) | 40 |
| BstAFI | CTTAAG | 1 cut(s) | 158 |
| BstDEI | CTNAG | 4 cut(s) | 63, 224, 274, 305 |
| BstFNI | CGCG | 1 cut(s) | 636 |
| BstKTI | GATC | 3 cut(s) | 232, 373, 525 |
| BstMBI | GATC | 3 cut(s) | 229, 370, 522 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 128, 306, 537, 653 |
| BstNSI | RCATGY | 2 cut(s) | 71, 269 |
| BstSFI | CTRYAG | 2 cut(s) | 295, 501 |
| BstSLI | GKGCMC | 1 cut(s) | 403 |
| BstUI | CGCG | 1 cut(s) | 636 |
| BstV1I | GCAGC | 2 cut(s) | 487, 515 |
| BstV2I | GAAGAC | 2 cut(s) | 476, 618 |
| BstX2I | RGATCY | 1 cut(s) | 229 |
| BstYI | RGATCY | 1 cut(s) | 229 |
| BsuI | GTATCC | 1 cut(s) | 28 |
| BsuRI | GGCC | 1 cut(s) | 272 |
| BtgZI | GCGATG | 1 cut(s) | 76 |
| BtsIMutI | CAGTG | 3 cut(s) | 45, 172, 489 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 394, 429 |
| CviAII | CATG | 4 cut(s) | 68, 238, 266, 608 |
| DdeI | CTNAG | 4 cut(s) | 63, 224, 274, 305 |
| DpnI | GATC | 3 cut(s) | 231, 372, 524 |
| DpnII | GATC | 3 cut(s) | 229, 370, 522 |
| Ecl136II | GAGCTC | 1 cut(s) | 596 |
| Eco130I | CCWWGG | 1 cut(s) | 599 |
| Eco24I | GRGCYC | 1 cut(s) | 598 |
| Eco53kI | GAGCTC | 1 cut(s) | 596 |
| EcoICRI | GAGCTC | 1 cut(s) | 596 |
| EcoT14I | CCWWGG | 1 cut(s) | 599 |
| EcoT38I | GRGCYC | 1 cut(s) | 598 |
| ErhI | CCWWGG | 1 cut(s) | 599 |
| FaeI | CATG | 4 cut(s) | 71, 241, 269, 611 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 518, 550 |
| FatI | CATG | 4 cut(s) | 67, 237, 265, 607 |
| Fnu4HI | GCNGC | 2 cut(s) | 501, 504 |
| FriOI | GRGCYC | 1 cut(s) | 598 |
| Fsp4HI | GCNGC | 2 cut(s) | 501, 504 |
| FspBI | CTAG | 2 cut(s) | 132, 585 |
| GluI | GCNGC | 2 cut(s) | 501, 504 |
| HaeIII | GGCC | 1 cut(s) | 272 |
| Hin1II | CATG | 4 cut(s) | 71, 241, 269, 611 |
| HinfI | GANTC | 3 cut(s) | 135, 278, 614 |
| HphI | GGTGA | 1 cut(s) | 541 |
| Hpy166II | GTNNAC | 1 cut(s) | 401 |
| Hpy188I | TCNGA | 3 cut(s) | 34, 107, 144 |
| Hpy188III | TCNNGA | 1 cut(s) | 19 |
| Hpy8I | GTNNAC | 1 cut(s) | 401 |
| HpyAV | CCTTC | 2 cut(s) | 293, 634 |
| HpyCH4III | ACNGT | 1 cut(s) | 40 |
| HpyCH4V | TGCA | 6 cut(s) | 51, 254, 323, 401, 503, 540 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 128, 306, 537, 653 |
| HpyF3I | CTNAG | 4 cut(s) | 63, 224, 274, 305 |
| Hsp92II | CATG | 4 cut(s) | 71, 241, 269, 611 |
| Kzo9I | GATC | 3 cut(s) | 229, 370, 522 |
| LmnI | GCTCC | 1 cut(s) | 601 |
| LpnPI | CCDG | 4 cut(s) | 4, 435, 492, 560 |
| Lsp1109I | GCAGC | 2 cut(s) | 487, 515 |
| LweI | GCATC | 2 cut(s) | 60, 241 |
| MaeI | CTAG | 2 cut(s) | 132, 585 |
| MaeIII | GTNAC | 1 cut(s) | 113 |
| MalI | GATC | 3 cut(s) | 231, 372, 524 |
| MboI | GATC | 3 cut(s) | 229, 370, 522 |
| MboII | GAAGA | 2 cut(s) | 481, 623 |
| MflI | RGATCY | 1 cut(s) | 229 |
| MhlI | GDGCHC | 2 cut(s) | 403, 598 |
| MluCI | AATT | 4 cut(s) | 101, 455, 553, 566 |
| MlyI | GAGTC | 2 cut(s) | 129, 608 |
| MmeI | TCCRAC | 2 cut(s) | 12, 656 |
| MnlI | CCTC | 1 cut(s) | 582 |
| MroXI | GAANNNNTTC | 2 cut(s) | 282, 455 |
| MseI | TTAA | 3 cut(s) | 159, 581, 668 |
| MslI | CAYNNNNRTG | 1 cut(s) | 242 |
| MspA1I | CMGCKG | 1 cut(s) | 506 |
| MspCI | CTTAAG | 1 cut(s) | 158 |
| MvnI | CGCG | 1 cut(s) | 636 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 128, 306, 537, 653 |
| NdeII | GATC | 3 cut(s) | 229, 370, 522 |
| NlaIII | CATG | 4 cut(s) | 71, 241, 269, 611 |
| NlaIV | GGNNCC | 1 cut(s) | 664 |
| NmuCI | GTSAC | 1 cut(s) | 113 |
| NspI | RCATGY | 2 cut(s) | 71, 269 |
| PdmI | GAANNNNTTC | 2 cut(s) | 282, 455 |
| PfeI | GAWTC | 1 cut(s) | 278 |
| PkrI | GCNGC | 2 cut(s) | 502, 505 |
| PleI | GAGTC | 2 cut(s) | 129, 608 |
| PpsI | GAGTC | 2 cut(s) | 129, 608 |
| Psp124BI | GAGCTC | 1 cut(s) | 598 |
| PspN4I | GGNNCC | 1 cut(s) | 664 |
| PstI | CTGCAG | 1 cut(s) | 505 |
| PsuI | RGATCY | 1 cut(s) | 229 |
| PvuII | CAGCTG | 1 cut(s) | 506 |
| RseI | CAYNNNNRTG | 1 cut(s) | 242 |
| SacI | GAGCTC | 1 cut(s) | 598 |
| SaqAI | TTAA | 3 cut(s) | 159, 581, 668 |
| SatI | GCNGC | 2 cut(s) | 501, 504 |
| Sau3AI | GATC | 3 cut(s) | 229, 370, 522 |
| SchI | GAGTC | 2 cut(s) | 129, 608 |
| SduI | GDGCHC | 2 cut(s) | 403, 598 |
| SfaNI | GCATC | 2 cut(s) | 60, 241 |
| SfcI | CTRYAG | 2 cut(s) | 295, 501 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 242 |
| SmlI | CTYRAG | 1 cut(s) | 158 |
| SmoI | CTYRAG | 1 cut(s) | 158 |
| Sse9I | AATT | 4 cut(s) | 101, 455, 553, 566 |
| SsiI | CCGC | 1 cut(s) | 634 |
| SspMI | CTAG | 2 cut(s) | 132, 585 |
| SstI | GAGCTC | 1 cut(s) | 598 |
| StyI | CCWWGG | 1 cut(s) | 599 |
| TaaI | ACNGT | 1 cut(s) | 40 |
| TaqI | TCGA | 1 cut(s) | 683 |
| TasI | AATT | 4 cut(s) | 101, 455, 553, 566 |
| TfiI | GAWTC | 1 cut(s) | 278 |
| Tru1I | TTAA | 3 cut(s) | 159, 581, 668 |
| Tru9I | TTAA | 3 cut(s) | 159, 581, 668 |
| TscAI | CASTG | 3 cut(s) | 45, 172, 496 |
| TseFI | GTSAC | 1 cut(s) | 113 |
| TseI | GCWGC | 2 cut(s) | 500, 503 |
| Tsp45I | GTSAC | 1 cut(s) | 113 |
| TspDTI | ATGAA | 4 cut(s) | 363, 546, 559, 624 |
| TspGWI | ACGGA | 1 cut(s) | 607 |
| TspRI | CASTG | 3 cut(s) | 45, 172, 496 |
| Vha464I | CTTAAG | 1 cut(s) | 158 |
| VneI | GTGCAC | 1 cut(s) | 399 |
| XapI | RAATTY | 2 cut(s) | 101, 455 |
| XceI | RCATGY | 2 cut(s) | 71, 269 |
| XmnI | GAANNNNTTC | 2 cut(s) | 282, 455 |
| XspI | CTAG | 2 cut(s) | 132, 585 |