gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 24 - 173 | 9.6e-18 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 561 |
| AcuI | CTGAAG | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 430, 561 |
| AgsI | TTSAA | 1 cut(s) | 694 |
| AjnI | CCWGG | 1 cut(s) | 682 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 653, 685 |
| AluBI | AGCT | 5 cut(s) | 338, 346, 413, 427, 577 |
| AluI | AGCT | 5 cut(s) | 338, 346, 413, 427, 577 |
| Alw21I | GWGCWC | 2 cut(s) | 77, 758 |
| Alw26I | GTCTC | 1 cut(s) | 152 |
| AoxI | GGCC | 3 cut(s) | 126, 639, 657 |
| AspS9I | GGNCC | 2 cut(s) | 127, 385 |
| AsuHPI | GGTGA | 3 cut(s) | 145, 383, 445 |
| AvaII | GGWCC | 1 cut(s) | 385 |
| Bbv12I | GWGCWC | 2 cut(s) | 77, 758 |
| BccI | CCATC | 4 cut(s) | 118, 284, 396, 491 |
| BciT130I | CCWGG | 1 cut(s) | 684 |
| BciVI | GTATCC | 1 cut(s) | 185 |
| BclI | TGATCA | 1 cut(s) | 373 |
| BcoDI | GTCTC | 1 cut(s) | 152 |
| BfmI | CTRYAG | 3 cut(s) | 206, 603, 673 |
| BfuI | GTATCC | 1 cut(s) | 185 |
| Bme1390I | CCNGG | 1 cut(s) | 684 |
| Bme18I | GGWCC | 1 cut(s) | 385 |
| BmgT120I | GGNCC | 2 cut(s) | 127, 385 |
| BmrFI | CCNGG | 1 cut(s) | 684 |
| BpuEI | CTTGAG | 2 cut(s) | 61, 413 |
| BsaBI | GATNNNNATC | 1 cut(s) | 225 |
| BsaJI | CCNNGG | 1 cut(s) | 759 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 601, 631 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 430, 561 |
| Bse1I | ACTGG | 1 cut(s) | 110 |
| Bse8I | GATNNNNATC | 1 cut(s) | 225 |
| BseBI | CCWGG | 1 cut(s) | 684 |
| BseDI | CCNNGG | 1 cut(s) | 759 |
| BseGI | GGATG | 1 cut(s) | 129 |
| BseJI | GATNNNNATC | 1 cut(s) | 225 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 430, 561 |
| BseMII | CTCAG | 4 cut(s) | 60, 177, 237, 361 |
| BseNI | ACTGG | 1 cut(s) | 110 |
| BseYI | CCCAGC | 1 cut(s) | 423 |
| BsgI | GTGCAG | 2 cut(s) | 606, 615 |
| BshFI | GGCC | 3 cut(s) | 128, 641, 659 |
| BsiHKAI | GWGCWC | 2 cut(s) | 77, 758 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 430, 561 |
| BsmAI | GTCTC | 1 cut(s) | 152 |
| BsmI | GAATGC | 3 cut(s) | 196, 265, 303 |
| BsnI | GGCC | 3 cut(s) | 128, 641, 659 |
| Bsp1286I | GDGCHC | 2 cut(s) | 77, 758 |
| Bsp143I | GATC | 1 cut(s) | 373 |
| BspANI | GGCC | 3 cut(s) | 128, 641, 659 |
| BspCNI | CTCAG | 4 cut(s) | 61, 178, 238, 360 |
| BspHI | TCATGA | 1 cut(s) | 318 |
| BspMAI | CTGCAG | 1 cut(s) | 210 |
| BsrI | ACTGG | 1 cut(s) | 110 |
| BssECI | CCNNGG | 1 cut(s) | 759 |
| BssMI | GATC | 1 cut(s) | 373 |
| BssT1I | CCWWGG | 1 cut(s) | 759 |
| Bst2UI | CCWGG | 1 cut(s) | 684 |
| Bst4CI | ACNGT | 2 cut(s) | 163, 704 |
| Bst6I | CTCTTC | 3 cut(s) | 78, 137, 492 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 629 |
| BstC8I | GCNNGC | 1 cut(s) | 411 |
| BstDEI | CTNAG | 8 cut(s) | 69, 93, 186, 196, 246, 347, 509, 585 |
| BstF5I | GGATG | 1 cut(s) | 129 |
| BstKTI | GATC | 1 cut(s) | 376 |
| BstMAI | GTCTC | 1 cut(s) | 152 |
| BstMBI | GATC | 1 cut(s) | 373 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 300, 521, 629, 638 |
| BstNI | CCWGG | 1 cut(s) | 684 |
| BstSCI | CCNGG | 1 cut(s) | 682 |
| BstSFI | CTRYAG | 3 cut(s) | 206, 603, 673 |
| BsuI | GTATCC | 1 cut(s) | 185 |
| BsuRI | GGCC | 3 cut(s) | 128, 641, 659 |
| BtsCI | GGATG | 1 cut(s) | 129 |
| BtsI | GCAGTG | 1 cut(s) | 63 |
| BtsIMutI | CAGTG | 2 cut(s) | 63, 261 |
| Cac8I | GCNNGC | 1 cut(s) | 411 |
| CciI | TCATGA | 1 cut(s) | 318 |
| Cfr13I | GGNCC | 2 cut(s) | 127, 385 |
| CviAII | CATG | 1 cut(s) | 319 |
| DdeI | CTNAG | 8 cut(s) | 69, 93, 186, 196, 246, 347, 509, 585 |
| DpnI | GATC | 1 cut(s) | 375 |
| DpnII | GATC | 1 cut(s) | 373 |
| DraI | TTTAAA | 1 cut(s) | 714 |
| Eam1104I | CTCTTC | 3 cut(s) | 78, 137, 492 |
| EarI | CTCTTC | 3 cut(s) | 78, 137, 492 |
| Eco130I | CCWWGG | 1 cut(s) | 759 |
| Eco47I | GGWCC | 1 cut(s) | 385 |
| Eco57I | CTGAAG | 1 cut(s) | 5 |
| EcoRII | CCWGG | 1 cut(s) | 682 |
| EcoT14I | CCWWGG | 1 cut(s) | 759 |
| EcoT22I | ATGCAT | 1 cut(s) | 267 |
| ErhI | CCWWGG | 1 cut(s) | 759 |
| FaeI | CATG | 1 cut(s) | 322 |
| FaiI | YATR | 7 cut(s) | 30, 99, 140, 263, 320, 599, 636 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 653, 685 |
| FatI | CATG | 1 cut(s) | 318 |
| FbaI | TGATCA | 1 cut(s) | 373 |
| FokI | GGATG | 1 cut(s) | 136 |
| GsaI | CCCAGC | 1 cut(s) | 427 |
| HaeIII | GGCC | 3 cut(s) | 128, 641, 659 |
| Hin1II | CATG | 1 cut(s) | 322 |
| HincII | GTYRAC | 1 cut(s) | 742 |
| HindII | GTYRAC | 1 cut(s) | 742 |
| HinfI | GANTC | 3 cut(s) | 233, 248, 592 |
| HpaI | GTTAAC | 1 cut(s) | 742 |
| HphI | GGTGA | 3 cut(s) | 145, 383, 445 |
| Hpy166II | GTNNAC | 3 cut(s) | 536, 544, 742 |
| Hpy188I | TCNGA | 3 cut(s) | 220, 238, 350 |
| Hpy188III | TCNNGA | 5 cut(s) | 230, 308, 319, 494, 694 |
| Hpy8I | GTNNAC | 3 cut(s) | 536, 544, 742 |
| HpyAV | CCTTC | 1 cut(s) | 445 |
| HpyCH4III | ACNGT | 2 cut(s) | 163, 704 |
| HpyCH4V | TGCA | 5 cut(s) | 11, 208, 265, 623, 632 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 300, 521, 629, 638 |
| HpyF3I | CTNAG | 8 cut(s) | 69, 93, 186, 196, 246, 347, 509, 585 |
| Hsp92II | CATG | 1 cut(s) | 322 |
| Ksp22I | TGATCA | 1 cut(s) | 373 |
| KspAI | GTTAAC | 1 cut(s) | 742 |
| Kzo9I | GATC | 1 cut(s) | 373 |
| MaeIII | GTNAC | 4 cut(s) | 61, 274, 433, 607 |
| MalI | GATC | 1 cut(s) | 375 |
| MboI | GATC | 1 cut(s) | 373 |
| MboII | GAAGA | 6 cut(s) | 95, 154, 509, 577, 601, 661 |
| MhlI | GDGCHC | 2 cut(s) | 77, 758 |
| MluCI | AATT | 2 cut(s) | 377, 477 |
| MlyI | GAGTC | 2 cut(s) | 242, 257 |
| MmeI | TCCRAC | 1 cut(s) | 216 |
| MnlI | CCTC | 5 cut(s) | 161, 315, 358, 365, 728 |
| Mph1103I | ATGCAT | 1 cut(s) | 267 |
| MseI | TTAA | 2 cut(s) | 713, 741 |
| MspA1I | CMGCKG | 1 cut(s) | 413 |
| MspR9I | CCNGG | 1 cut(s) | 684 |
| Mva1269I | GAATGC | 3 cut(s) | 196, 265, 303 |
| MvaI | CCWGG | 1 cut(s) | 684 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 300, 521, 629, 638 |
| NdeII | GATC | 1 cut(s) | 373 |
| NlaIII | CATG | 1 cut(s) | 322 |
| NmuCI | GTSAC | 3 cut(s) | 61, 274, 433 |
| NsiI | ATGCAT | 1 cut(s) | 267 |
| PagI | TCATGA | 1 cut(s) | 318 |
| PctI | GAATGC | 3 cut(s) | 196, 265, 303 |
| PfeI | GAWTC | 1 cut(s) | 592 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 561 |
| PleI | GAGTC | 2 cut(s) | 241, 256 |
| PpsI | GAGTC | 2 cut(s) | 241, 256 |
| Psp6I | CCWGG | 1 cut(s) | 682 |
| PspFI | CCCAGC | 1 cut(s) | 423 |
| PspGI | CCWGG | 1 cut(s) | 682 |
| PspPI | GGNCC | 2 cut(s) | 127, 385 |
| PstI | CTGCAG | 1 cut(s) | 210 |
| PvuII | CAGCTG | 1 cut(s) | 413 |
| SaqAI | TTAA | 2 cut(s) | 713, 741 |
| Sau3AI | GATC | 1 cut(s) | 373 |
| Sau96I | GGNCC | 2 cut(s) | 127, 385 |
| SchI | GAGTC | 2 cut(s) | 242, 257 |
| ScrFI | CCNGG | 1 cut(s) | 684 |
| SduI | GDGCHC | 2 cut(s) | 77, 758 |
| SfcI | CTRYAG | 3 cut(s) | 206, 603, 673 |
| SinI | GGWCC | 1 cut(s) | 385 |
| SmlI | CTYRAG | 2 cut(s) | 40, 428 |
| SmoI | CTYRAG | 2 cut(s) | 40, 428 |
| Sse9I | AATT | 2 cut(s) | 377, 477 |
| StyD4I | CCNGG | 1 cut(s) | 682 |
| StyI | CCWWGG | 1 cut(s) | 759 |
| TaaI | ACNGT | 2 cut(s) | 163, 704 |
| TaqI | TCGA | 1 cut(s) | 229 |
| TasI | AATT | 2 cut(s) | 377, 477 |
| TfiI | GAWTC | 1 cut(s) | 592 |
| Tru1I | TTAA | 2 cut(s) | 713, 741 |
| Tru9I | TTAA | 2 cut(s) | 713, 741 |
| TscAI | CASTG | 2 cut(s) | 70, 261 |
| TseFI | GTSAC | 3 cut(s) | 61, 274, 433 |
| Tsp45I | GTSAC | 3 cut(s) | 61, 274, 433 |
| TspDTI | ATGAA | 4 cut(s) | 155, 202, 296, 486 |
| TspRI | CASTG | 2 cut(s) | 70, 261 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 561 |
| VpaK11BI | GGWCC | 1 cut(s) | 385 |
| Zsp2I | ATGCAT | 1 cut(s) | 267 |