gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 19, 202 |
| AfaI | GTAC | 1 cut(s) | 340 |
| AgsI | TTSAA | 8 cut(s) | 40, 58, 154, 266, 283, 365, 472, 493 |
| AluBI | AGCT | 1 cut(s) | 510 |
| AluI | AGCT | 1 cut(s) | 510 |
| ApoI | RAATTY | 2 cut(s) | 19, 202 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 488 |
| AsuII | TTCGAA | 1 cut(s) | 17 |
| BccI | CCATC | 1 cut(s) | 363 |
| BciVI | GTATCC | 1 cut(s) | 298 |
| BfmI | CTRYAG | 1 cut(s) | 24 |
| BfuI | GTATCC | 1 cut(s) | 298 |
| BmsI | GCATC | 2 cut(s) | 425, 447 |
| Bpu14I | TTCGAA | 1 cut(s) | 17 |
| BsaBI | GATNNNNATC | 1 cut(s) | 131 |
| Bse1I | ACTGG | 1 cut(s) | 232 |
| Bse3DI | GCAATG | 1 cut(s) | 167 |
| Bse8I | GATNNNNATC | 1 cut(s) | 131 |
| BseGI | GGATG | 2 cut(s) | 420, 440 |
| BseJI | GATNNNNATC | 1 cut(s) | 131 |
| BseMI | GCAATG | 1 cut(s) | 167 |
| BseMII | CTCAG | 1 cut(s) | 339 |
| BseNI | ACTGG | 1 cut(s) | 232 |
| Bsp119I | TTCGAA | 1 cut(s) | 17 |
| BspCNI | CTCAG | 1 cut(s) | 340 |
| BspHI | TCATGA | 1 cut(s) | 135 |
| BspMAI | CTGCAG | 1 cut(s) | 28 |
| BspT104I | TTCGAA | 1 cut(s) | 17 |
| BsrDI | GCAATG | 1 cut(s) | 167 |
| BsrI | ACTGG | 1 cut(s) | 232 |
| Bst4CI | ACNGT | 2 cut(s) | 46, 427 |
| BstBI | TTCGAA | 1 cut(s) | 17 |
| BstC8I | GCNNGC | 1 cut(s) | 456 |
| BstDEI | CTNAG | 1 cut(s) | 348 |
| BstF5I | GGATG | 2 cut(s) | 420, 440 |
| BstSFI | CTRYAG | 1 cut(s) | 24 |
| BsuI | GTATCC | 1 cut(s) | 298 |
| BtsCI | GGATG | 2 cut(s) | 420, 440 |
| BtsIMutI | CAGTG | 2 cut(s) | 42, 225 |
| Cac8I | GCNNGC | 1 cut(s) | 456 |
| CciI | TCATGA | 1 cut(s) | 135 |
| Csp6I | GTAC | 1 cut(s) | 339 |
| CviAII | CATG | 2 cut(s) | 136, 431 |
| CviJI | RGCY | 9 cut(s) | 5, 88, 209, 316, 347, 380, 454, 476, 510 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 88, 209, 316, 347, 380, 454, 476, 510 |
| CviQI | GTAC | 1 cut(s) | 339 |
| DdeI | CTNAG | 1 cut(s) | 348 |
| EcoRI | GAATTC | 1 cut(s) | 19 |
| EcoT22I | ATGCAT | 1 cut(s) | 440 |
| FaeI | CATG | 2 cut(s) | 139, 434 |
| FaiI | YATR | 7 cut(s) | 137, 215, 221, 291, 296, 320, 432 |
| FatI | CATG | 2 cut(s) | 135, 430 |
| FokI | GGATG | 2 cut(s) | 427, 447 |
| Hin1II | CATG | 2 cut(s) | 139, 434 |
| HinfI | GANTC | 4 cut(s) | 73, 139, 150, 497 |
| Hpy188I | TCNGA | 1 cut(s) | 78 |
| Hpy188III | TCNNGA | 1 cut(s) | 136 |
| HpyAV | CCTTC | 1 cut(s) | 249 |
| HpyCH4III | ACNGT | 2 cut(s) | 46, 427 |
| HpyCH4V | TGCA | 5 cut(s) | 26, 182, 430, 438, 458 |
| HpyF3I | CTNAG | 1 cut(s) | 348 |
| Hsp92II | CATG | 2 cut(s) | 139, 434 |
| LmnI | GCTCC | 1 cut(s) | 123 |
| LpnPI | CCDG | 3 cut(s) | 213, 229, 468 |
| LweI | GCATC | 2 cut(s) | 425, 447 |
| MaeIII | GTNAC | 1 cut(s) | 388 |
| MluCI | AATT | 7 cut(s) | 19, 183, 202, 238, 261, 266, 399 |
| MnlI | CCTC | 1 cut(s) | 333 |
| Mph1103I | ATGCAT | 1 cut(s) | 440 |
| MroXI | GAANNNNTTC | 1 cut(s) | 488 |
| NlaIII | CATG | 2 cut(s) | 139, 434 |
| NmuCI | GTSAC | 1 cut(s) | 388 |
| NsiI | ATGCAT | 1 cut(s) | 440 |
| NspV | TTCGAA | 1 cut(s) | 17 |
| PagI | TCATGA | 1 cut(s) | 135 |
| PdmI | GAANNNNTTC | 1 cut(s) | 488 |
| PfeI | GAWTC | 4 cut(s) | 73, 139, 150, 497 |
| PflFI | GACNNNGTC | 1 cut(s) | 394 |
| PstI | CTGCAG | 1 cut(s) | 28 |
| PsyI | GACNNNGTC | 1 cut(s) | 394 |
| RsaI | GTAC | 1 cut(s) | 340 |
| RsaNI | GTAC | 1 cut(s) | 339 |
| SetI | ASST | 5 cut(s) | 38, 63, 325, 449, 512 |
| SfaNI | GCATC | 2 cut(s) | 425, 447 |
| SfcI | CTRYAG | 1 cut(s) | 24 |
| SfuI | TTCGAA | 1 cut(s) | 17 |
| Sse9I | AATT | 7 cut(s) | 19, 183, 202, 238, 261, 266, 399 |
| TaaI | ACNGT | 2 cut(s) | 46, 427 |
| TaqI | TCGA | 3 cut(s) | 11, 17, 112 |
| TasI | AATT | 7 cut(s) | 19, 183, 202, 238, 261, 266, 399 |
| TatI | WGTACW | 1 cut(s) | 338 |
| TfiI | GAWTC | 4 cut(s) | 73, 139, 150, 497 |
| TscAI | CASTG | 2 cut(s) | 49, 232 |
| TseFI | GTSAC | 1 cut(s) | 388 |
| Tsp45I | GTSAC | 1 cut(s) | 388 |
| TspDTI | ATGAA | 3 cut(s) | 152, 156, 215 |
| TspRI | CASTG | 2 cut(s) | 49, 232 |
| Tth111I | GACNNNGTC | 1 cut(s) | 394 |
| XapI | RAATTY | 2 cut(s) | 19, 202 |
| XmnI | GAANNNNTTC | 1 cut(s) | 488 |
| Zsp2I | ATGCAT | 1 cut(s) | 440 |