gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 33 - 191 | 2.5e-16 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 171 |
| AclWI | GGATC | 3 cut(s) | 40, 104, 117 |
| AcsI | RAATTY | 4 cut(s) | 78, 237, 319, 652 |
| AfaI | GTAC | 5 cut(s) | 161, 290, 377, 555, 573 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 169 |
| AjnI | CCWGG | 1 cut(s) | 72 |
| AluBI | AGCT | 1 cut(s) | 308 |
| AluI | AGCT | 1 cut(s) | 308 |
| Alw26I | GTCTC | 4 cut(s) | 51, 140, 503, 557 |
| AlwI | GGATC | 3 cut(s) | 40, 104, 117 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 248 |
| AoxI | GGCC | 1 cut(s) | 189 |
| ApoI | RAATTY | 4 cut(s) | 78, 237, 319, 652 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 752 |
| AsuHPI | GGTGA | 2 cut(s) | 700, 726 |
| BamHI | GGATCC | 1 cut(s) | 109 |
| BccI | CCATC | 1 cut(s) | 788 |
| BciT130I | CCWGG | 1 cut(s) | 74 |
| BclI | TGATCA | 1 cut(s) | 91 |
| BcoDI | GTCTC | 4 cut(s) | 51, 140, 503, 557 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfmI | CTRYAG | 1 cut(s) | 164 |
| BfuAI | ACCTGC | 1 cut(s) | 171 |
| Bme1390I | CCNGG | 1 cut(s) | 74 |
| BmiI | GGNNCC | 1 cut(s) | 111 |
| BmrFI | CCNGG | 1 cut(s) | 74 |
| BmrI | ACTGGG | 1 cut(s) | 611 |
| BmsI | GCATC | 5 cut(s) | 15, 130, 211, 375, 740 |
| BmuI | ACTGGG | 1 cut(s) | 611 |
| Bpu10I | CCTNAGC | 1 cut(s) | 101 |
| BpuEI | CTTGAG | 2 cut(s) | 476, 560 |
| BsaI | GGTCTC | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 2 cut(s) | 73, 711 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 169 |
| Bse1I | ACTGG | 2 cut(s) | 319, 617 |
| Bse3DI | GCAATG | 1 cut(s) | 276 |
| BseBI | CCWGG | 1 cut(s) | 74 |
| BseDI | CCNNGG | 2 cut(s) | 73, 711 |
| BseGI | GGATG | 1 cut(s) | 121 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 169 |
| BseMI | GCAATG | 1 cut(s) | 276 |
| BseMII | CTCAG | 1 cut(s) | 558 |
| BseNI | ACTGG | 2 cut(s) | 319, 617 |
| BshFI | GGCC | 1 cut(s) | 191 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 169 |
| BsmAI | GTCTC | 4 cut(s) | 51, 140, 503, 557 |
| BsnI | GGCC | 1 cut(s) | 191 |
| Bso31I | GGTCTC | 1 cut(s) | 51 |
| Bsp1407I | TGTACA | 1 cut(s) | 553 |
| Bsp143I | GATC | 4 cut(s) | 32, 91, 109, 195 |
| BspANI | GGCC | 1 cut(s) | 191 |
| BspCNI | CTCAG | 1 cut(s) | 559 |
| BspLI | GGNNCC | 1 cut(s) | 111 |
| BspMAI | CTGCAG | 1 cut(s) | 168 |
| BspMI | ACCTGC | 1 cut(s) | 171 |
| BspPI | GGATC | 3 cut(s) | 40, 104, 117 |
| BspTNI | GGTCTC | 1 cut(s) | 51 |
| BsrDI | GCAATG | 1 cut(s) | 276 |
| BsrGI | TGTACA | 1 cut(s) | 553 |
| BsrI | ACTGG | 2 cut(s) | 319, 617 |
| BssECI | CCNNGG | 2 cut(s) | 73, 711 |
| BssMI | GATC | 4 cut(s) | 32, 91, 109, 195 |
| BssT1I | CCWWGG | 1 cut(s) | 711 |
| Bst2UI | CCWGG | 1 cut(s) | 74 |
| Bst4CI | ACNGT | 3 cut(s) | 430, 485, 791 |
| Bst6I | CTCTTC | 1 cut(s) | 555 |
| BstAUI | TGTACA | 1 cut(s) | 553 |
| BstC8I | GCNNGC | 1 cut(s) | 139 |
| BstDEI | CTNAG | 5 cut(s) | 101, 150, 309, 567, 684 |
| BstF5I | GGATG | 1 cut(s) | 121 |
| BstKTI | GATC | 4 cut(s) | 35, 94, 112, 198 |
| BstMAI | GTCTC | 4 cut(s) | 51, 140, 503, 557 |
| BstMBI | GATC | 4 cut(s) | 32, 91, 109, 195 |
| BstNI | CCWGG | 1 cut(s) | 74 |
| BstSCI | CCNGG | 1 cut(s) | 72 |
| BstSFI | CTRYAG | 1 cut(s) | 164 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| BsuRI | GGCC | 1 cut(s) | 191 |
| BtsCI | GGATG | 1 cut(s) | 121 |
| BtsI | GCAGTG | 3 cut(s) | 173, 231, 396 |
| BtsIMutI | CAGTG | 4 cut(s) | 173, 231, 396, 624 |
| BveI | ACCTGC | 1 cut(s) | 171 |
| Cac8I | GCNNGC | 1 cut(s) | 139 |
| CaiI | CAGNNNCTG | 1 cut(s) | 248 |
| Csp6I | GTAC | 5 cut(s) | 160, 289, 376, 554, 572 |
| CviAII | CATG | 4 cut(s) | 95, 202, 214, 607 |
| CviJI | RGCY | 6 cut(s) | 191, 308, 590, 637, 798, 811 |
| CviKI_1 | RGCY | 6 cut(s) | 191, 308, 590, 637, 798, 811 |
| CviQI | GTAC | 5 cut(s) | 160, 289, 376, 554, 572 |
| DdeI | CTNAG | 5 cut(s) | 101, 150, 309, 567, 684 |
| DpnI | GATC | 4 cut(s) | 34, 93, 111, 197 |
| DpnII | GATC | 4 cut(s) | 32, 91, 109, 195 |
| Eam1104I | CTCTTC | 1 cut(s) | 555 |
| EarI | CTCTTC | 1 cut(s) | 555 |
| Eco130I | CCWWGG | 1 cut(s) | 711 |
| Eco31I | GGTCTC | 1 cut(s) | 51 |
| EcoRI | GAATTC | 2 cut(s) | 78, 237 |
| EcoRII | CCWGG | 1 cut(s) | 72 |
| EcoT14I | CCWWGG | 1 cut(s) | 711 |
| EcoT22I | ATGCAT | 1 cut(s) | 733 |
| ErhI | CCWWGG | 1 cut(s) | 711 |
| FaeI | CATG | 4 cut(s) | 98, 205, 217, 610 |
| FaiI | YATR | 9 cut(s) | 96, 180, 203, 215, 383, 548, 550, 599, 608 |
| FatI | CATG | 4 cut(s) | 94, 201, 213, 606 |
| FauNDI | CATATG | 1 cut(s) | 548 |
| FbaI | TGATCA | 1 cut(s) | 91 |
| FokI | GGATG | 1 cut(s) | 108 |
| FspBI | CTAG | 1 cut(s) | 83 |
| HaeIII | GGCC | 1 cut(s) | 191 |
| Hin1II | CATG | 4 cut(s) | 98, 205, 217, 610 |
| HinfI | GANTC | 3 cut(s) | 245, 496, 526 |
| HphI | GGTGA | 2 cut(s) | 700, 726 |
| Hpy166II | GTNNAC | 2 cut(s) | 554, 622 |
| Hpy188I | TCNGA | 3 cut(s) | 250, 301, 703 |
| Hpy8I | GTNNAC | 2 cut(s) | 554, 622 |
| HpyAV | CCTTC | 5 cut(s) | 46, 223, 406, 778, 844 |
| HpyCH4III | ACNGT | 3 cut(s) | 430, 485, 791 |
| HpyF3I | CTNAG | 5 cut(s) | 101, 150, 309, 567, 684 |
| Hsp92II | CATG | 4 cut(s) | 98, 205, 217, 610 |
| Ksp22I | TGATCA | 1 cut(s) | 91 |
| Kzo9I | GATC | 4 cut(s) | 32, 91, 109, 195 |
| LweI | GCATC | 5 cut(s) | 15, 130, 211, 375, 740 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeIII | GTNAC | 3 cut(s) | 11, 424, 592 |
| MalI | GATC | 4 cut(s) | 34, 93, 111, 197 |
| MboI | GATC | 4 cut(s) | 32, 91, 109, 195 |
| MboII | GAAGA | 3 cut(s) | 217, 446, 572 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MluCI | AATT | 6 cut(s) | 65, 78, 237, 319, 652, 805 |
| MlyI | GAGTC | 2 cut(s) | 505, 535 |
| MmeI | TCCRAC | 2 cut(s) | 149, 751 |
| MnlI | CCTC | 5 cut(s) | 100, 227, 339, 562, 573 |
| Mph1103I | ATGCAT | 1 cut(s) | 733 |
| MroXI | GAANNNNTTC | 1 cut(s) | 752 |
| MseI | TTAA | 2 cut(s) | 462, 645 |
| MspR9I | CCNGG | 1 cut(s) | 74 |
| MvaI | CCWGG | 1 cut(s) | 74 |
| NdeI | CATATG | 1 cut(s) | 548 |
| NdeII | GATC | 4 cut(s) | 32, 91, 109, 195 |
| NlaIII | CATG | 4 cut(s) | 98, 205, 217, 610 |
| NlaIV | GGNNCC | 1 cut(s) | 111 |
| NmuCI | GTSAC | 1 cut(s) | 424 |
| NsiI | ATGCAT | 1 cut(s) | 733 |
| PdmI | GAANNNNTTC | 1 cut(s) | 752 |
| PfeI | GAWTC | 1 cut(s) | 245 |
| PleI | GAGTC | 2 cut(s) | 504, 534 |
| PpsI | GAGTC | 2 cut(s) | 504, 534 |
| Psp6I | CCWGG | 1 cut(s) | 72 |
| PspGI | CCWGG | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 1 cut(s) | 111 |
| PstI | CTGCAG | 1 cut(s) | 168 |
| PstNI | CAGNNNCTG | 1 cut(s) | 248 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| RsaI | GTAC | 5 cut(s) | 161, 290, 377, 555, 573 |
| RsaNI | GTAC | 5 cut(s) | 160, 289, 376, 554, 572 |
| SaqAI | TTAA | 2 cut(s) | 462, 645 |
| Sau3AI | GATC | 4 cut(s) | 32, 91, 109, 195 |
| SchI | GAGTC | 2 cut(s) | 505, 535 |
| ScrFI | CCNGG | 1 cut(s) | 74 |
| SetI | ASST | 7 cut(s) | 63, 75, 165, 297, 310, 350, 573 |
| SfaNI | GCATC | 5 cut(s) | 15, 130, 211, 375, 740 |
| SfcI | CTRYAG | 1 cut(s) | 164 |
| SmlI | CTYRAG | 2 cut(s) | 491, 575 |
| SmoI | CTYRAG | 2 cut(s) | 491, 575 |
| Sse9I | AATT | 6 cut(s) | 65, 78, 237, 319, 652, 805 |
| SspMI | CTAG | 1 cut(s) | 83 |
| StyD4I | CCNGG | 1 cut(s) | 72 |
| StyI | CCWWGG | 1 cut(s) | 711 |
| TaaI | ACNGT | 3 cut(s) | 430, 485, 791 |
| TasI | AATT | 6 cut(s) | 65, 78, 237, 319, 652, 805 |
| TatI | WGTACW | 3 cut(s) | 288, 375, 553 |
| TfiI | GAWTC | 1 cut(s) | 245 |
| Tru1I | TTAA | 2 cut(s) | 462, 645 |
| Tru9I | TTAA | 2 cut(s) | 462, 645 |
| TscAI | CASTG | 4 cut(s) | 173, 231, 403, 624 |
| TseFI | GTSAC | 1 cut(s) | 424 |
| Tsp45I | GTSAC | 1 cut(s) | 424 |
| TspDTI | ATGAA | 3 cut(s) | 218, 265, 549 |
| TspRI | CASTG | 4 cut(s) | 173, 231, 403, 624 |
| XapI | RAATTY | 4 cut(s) | 78, 237, 319, 652 |
| XbaI | TCTAGA | 1 cut(s) | 82 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 604 |
| XmnI | GAANNNNTTC | 1 cut(s) | 752 |
| XspI | CTAG | 1 cut(s) | 83 |
| Zsp2I | ATGCAT | 1 cut(s) | 733 |