gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 48 |
| AccI | GTMKAC | 2 cut(s) | 21, 422 |
| AccII | CGCG | 1 cut(s) | 94 |
| AciI | CCGC | 2 cut(s) | 39, 46 |
| AclWI | GGATC | 3 cut(s) | 98, 272, 285 |
| AcuI | CTGAAG | 1 cut(s) | 193 |
| AcyI | GRCGYC | 1 cut(s) | 27 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 113 |
| AgsI | TTSAA | 1 cut(s) | 332 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 174, 206 |
| AluBI | AGCT | 4 cut(s) | 9, 35, 190, 235 |
| AluI | AGCT | 4 cut(s) | 9, 35, 190, 235 |
| Alw21I | GWGCWC | 2 cut(s) | 237, 270 |
| AlwI | GGATC | 3 cut(s) | 98, 272, 285 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 416 |
| AoxI | GGCC | 1 cut(s) | 315 |
| ApeKI | GCWGC | 1 cut(s) | 32 |
| AspLEI | GCGC | 1 cut(s) | 96 |
| AxyI | CCTNAGG | 1 cut(s) | 285 |
| BamHI | GGATCC | 1 cut(s) | 277 |
| BanII | GRGCYC | 1 cut(s) | 237 |
| Bbv12I | GWGCWC | 2 cut(s) | 237, 270 |
| BbvI | GCAGC | 1 cut(s) | 44 |
| BccI | CCATC | 1 cut(s) | 75 |
| BceAI | ACGGC | 2 cut(s) | 40, 123 |
| BclI | TGATCA | 3 cut(s) | 259, 363, 369 |
| BfaI | CTAG | 1 cut(s) | 135 |
| BisI | GCNGC | 1 cut(s) | 33 |
| BlsI | GCNGC | 1 cut(s) | 34 |
| BmiI | GGNNCC | 1 cut(s) | 279 |
| BpuEI | CTTGAG | 1 cut(s) | 254 |
| BsaBI | GATNNNNATC | 1 cut(s) | 368 |
| BsaHI | GRCGYC | 1 cut(s) | 27 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 113 |
| Bse1I | ACTGG | 1 cut(s) | 85 |
| Bse21I | CCTNAGG | 1 cut(s) | 285 |
| Bse8I | GATNNNNATC | 1 cut(s) | 368 |
| BseJI | GATNNNNATC | 1 cut(s) | 368 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 113 |
| BseMII | CTCAG | 2 cut(s) | 276, 408 |
| BseNI | ACTGG | 1 cut(s) | 85 |
| BseRI | GAGGAG | 1 cut(s) | 414 |
| BseXI | GCAGC | 1 cut(s) | 44 |
| Bsh1236I | CGCG | 1 cut(s) | 94 |
| BshFI | GGCC | 1 cut(s) | 317 |
| BsiHKAI | GWGCWC | 2 cut(s) | 237, 270 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 113 |
| BsmI | GAATGC | 1 cut(s) | 405 |
| BsnI | GGCC | 1 cut(s) | 317 |
| Bsp1286I | GDGCHC | 2 cut(s) | 237, 270 |
| Bsp143I | GATC | 5 cut(s) | 103, 259, 277, 363, 369 |
| BspACI | CCGC | 2 cut(s) | 39, 46 |
| BspANI | GGCC | 1 cut(s) | 317 |
| BspCNI | CTCAG | 2 cut(s) | 277, 409 |
| BspFNI | CGCG | 1 cut(s) | 94 |
| BspHI | TCATGA | 1 cut(s) | 366 |
| BspLI | GGNNCC | 1 cut(s) | 279 |
| BspPI | GGATC | 3 cut(s) | 98, 272, 285 |
| BsrBI | CCGCTC | 1 cut(s) | 48 |
| BsrI | ACTGG | 1 cut(s) | 85 |
| BssMI | GATC | 5 cut(s) | 103, 259, 277, 363, 369 |
| BssNAI | GTATAC | 1 cut(s) | 423 |
| BssNI | GRCGYC | 1 cut(s) | 27 |
| Bst1107I | GTATAC | 1 cut(s) | 423 |
| Bst4CI | ACNGT | 1 cut(s) | 19 |
| BstACI | GRCGYC | 1 cut(s) | 27 |
| BstC8I | GCNNGC | 1 cut(s) | 307 |
| BstDEI | CTNAG | 3 cut(s) | 71, 285, 417 |
| BstFNI | CGCG | 1 cut(s) | 94 |
| BstHHI | GCGC | 1 cut(s) | 96 |
| BstKTI | GATC | 5 cut(s) | 106, 262, 280, 366, 372 |
| BstMBI | GATC | 5 cut(s) | 103, 259, 277, 363, 369 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 38 |
| BstUI | CGCG | 1 cut(s) | 94 |
| BstV1I | GCAGC | 1 cut(s) | 44 |
| BstX2I | RGATCY | 2 cut(s) | 103, 277 |
| BstYI | RGATCY | 2 cut(s) | 103, 277 |
| BstZ17I | GTATAC | 1 cut(s) | 423 |
| Bsu36I | CCTNAGG | 1 cut(s) | 285 |
| BsuRI | GGCC | 1 cut(s) | 317 |
| BtsI | GCAGTG | 1 cut(s) | 124 |
| BtsIMutI | CAGTG | 1 cut(s) | 124 |
| Cac8I | GCNNGC | 1 cut(s) | 307 |
| CaiI | CAGNNNCTG | 1 cut(s) | 416 |
| CciI | TCATGA | 1 cut(s) | 366 |
| CfoI | GCGC | 1 cut(s) | 96 |
| CseI | GACGC | 1 cut(s) | 16 |
| CviAII | CATG | 3 cut(s) | 157, 263, 367 |
| DdeI | CTNAG | 3 cut(s) | 71, 285, 417 |
| DpnI | GATC | 5 cut(s) | 105, 261, 279, 365, 371 |
| DpnII | GATC | 5 cut(s) | 103, 259, 277, 363, 369 |
| Ecl136II | GAGCTC | 1 cut(s) | 235 |
| Eco24I | GRGCYC | 1 cut(s) | 237 |
| Eco53kI | GAGCTC | 1 cut(s) | 235 |
| Eco57I | CTGAAG | 1 cut(s) | 193 |
| Eco81I | CCTNAGG | 1 cut(s) | 285 |
| EcoICRI | GAGCTC | 1 cut(s) | 235 |
| EcoT22I | ATGCAT | 1 cut(s) | 162 |
| EcoT38I | GRGCYC | 1 cut(s) | 237 |
| FaeI | CATG | 3 cut(s) | 160, 266, 370 |
| FaiI | YATR | 7 cut(s) | 158, 170, 258, 264, 368, 383, 423 |
| FatI | CATG | 3 cut(s) | 156, 262, 366 |
| FbaI | TGATCA | 3 cut(s) | 259, 363, 369 |
| FblI | GTMKAC | 2 cut(s) | 21, 422 |
| Fnu4HI | GCNGC | 1 cut(s) | 33 |
| FriOI | GRGCYC | 1 cut(s) | 237 |
| Fsp4HI | GCNGC | 1 cut(s) | 33 |
| FspBI | CTAG | 1 cut(s) | 135 |
| GlaI | GCGC | 1 cut(s) | 95 |
| GluI | GCNGC | 1 cut(s) | 33 |
| HaeIII | GGCC | 1 cut(s) | 317 |
| HgaI | GACGC | 1 cut(s) | 16 |
| HhaI | GCGC | 1 cut(s) | 96 |
| Hin1I | GRCGYC | 1 cut(s) | 27 |
| Hin1II | CATG | 3 cut(s) | 160, 266, 370 |
| Hin6I | GCGC | 1 cut(s) | 94 |
| HinP1I | GCGC | 1 cut(s) | 94 |
| HincII | GTYRAC | 1 cut(s) | 22 |
| HindII | GTYRAC | 1 cut(s) | 22 |
| HinfI | GANTC | 2 cut(s) | 131, 413 |
| Hpy166II | GTNNAC | 2 cut(s) | 22, 423 |
| Hpy188I | TCNGA | 5 cut(s) | 108, 195, 212, 226, 418 |
| Hpy188III | TCNNGA | 3 cut(s) | 367, 373, 410 |
| Hpy8I | GTNNAC | 2 cut(s) | 22, 423 |
| Hpy99I | CGWCG | 4 cut(s) | 26, 32, 94, 102 |
| HpyCH4III | ACNGT | 1 cut(s) | 19 |
| HpyCH4V | TGCA | 2 cut(s) | 160, 305 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 38 |
| HpyF3I | CTNAG | 3 cut(s) | 71, 285, 417 |
| Hsp92I | GRCGYC | 1 cut(s) | 27 |
| Hsp92II | CATG | 3 cut(s) | 160, 266, 370 |
| HspAI | GCGC | 1 cut(s) | 94 |
| Ksp22I | TGATCA | 3 cut(s) | 259, 363, 369 |
| Kzo9I | GATC | 5 cut(s) | 103, 259, 277, 363, 369 |
| LpnPI | CCDG | 6 cut(s) | 19, 98, 295, 297, 399, 423 |
| Lsp1109I | GCAGC | 1 cut(s) | 44 |
| MaeI | CTAG | 1 cut(s) | 135 |
| MalI | GATC | 5 cut(s) | 105, 261, 279, 365, 371 |
| MbiI | CCGCTC | 1 cut(s) | 48 |
| MboI | GATC | 5 cut(s) | 103, 259, 277, 363, 369 |
| MflI | RGATCY | 2 cut(s) | 103, 277 |
| MhlI | GDGCHC | 2 cut(s) | 237, 270 |
| MluCI | AATT | 3 cut(s) | 51, 183, 290 |
| MnlI | CCTC | 6 cut(s) | 156, 268, 280, 307, 392, 395 |
| Mph1103I | ATGCAT | 1 cut(s) | 162 |
| Mva1269I | GAATGC | 1 cut(s) | 405 |
| MvnI | CGCG | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 38 |
| NdeII | GATC | 5 cut(s) | 103, 259, 277, 363, 369 |
| NlaIII | CATG | 3 cut(s) | 160, 266, 370 |
| NlaIV | GGNNCC | 1 cut(s) | 279 |
| NsiI | ATGCAT | 1 cut(s) | 162 |
| PagI | TCATGA | 1 cut(s) | 366 |
| PctI | GAATGC | 1 cut(s) | 405 |
| PfeI | GAWTC | 2 cut(s) | 131, 413 |
| PflFI | GACNNNGTC | 1 cut(s) | 26 |
| PkrI | GCNGC | 1 cut(s) | 34 |
| Psp124BI | GAGCTC | 1 cut(s) | 237 |
| PspN4I | GGNNCC | 1 cut(s) | 279 |
| PstNI | CAGNNNCTG | 1 cut(s) | 416 |
| PsuI | RGATCY | 2 cut(s) | 103, 277 |
| PsyI | GACNNNGTC | 1 cut(s) | 26 |
| SacI | GAGCTC | 1 cut(s) | 237 |
| SalI | GTCGAC | 1 cut(s) | 20 |
| SatI | GCNGC | 1 cut(s) | 33 |
| Sau3AI | GATC | 5 cut(s) | 103, 259, 277, 363, 369 |
| SduI | GDGCHC | 2 cut(s) | 237, 270 |
| SetI | ASST | 6 cut(s) | 11, 37, 192, 237, 286, 388 |
| SmlI | CTYRAG | 1 cut(s) | 269 |
| SmoI | CTYRAG | 1 cut(s) | 269 |
| Sse9I | AATT | 3 cut(s) | 51, 183, 290 |
| SsiI | CCGC | 2 cut(s) | 39, 46 |
| SspMI | CTAG | 1 cut(s) | 135 |
| SstI | GAGCTC | 1 cut(s) | 237 |
| TaaI | ACNGT | 1 cut(s) | 19 |
| TaqI | TCGA | 1 cut(s) | 21 |
| TasI | AATT | 3 cut(s) | 51, 183, 290 |
| TfiI | GAWTC | 2 cut(s) | 131, 413 |
| TscAI | CASTG | 1 cut(s) | 124 |
| TseI | GCWGC | 1 cut(s) | 32 |
| TspRI | CASTG | 1 cut(s) | 124 |
| Tth111I | GACNNNGTC | 1 cut(s) | 26 |
| XmiI | GTMKAC | 2 cut(s) | 21, 422 |
| XspI | CTAG | 1 cut(s) | 135 |
| Zsp2I | ATGCAT | 1 cut(s) | 162 |