gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 41 - 198 | 3.3e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 136 |
| Acc36I | ACCTGC | 2 cut(s) | 136, 148 |
| AclWI | GGATC | 1 cut(s) | 435 |
| AcoI | YGGCCR | 1 cut(s) | 201 |
| AcsI | RAATTY | 1 cut(s) | 359 |
| AfaI | GTAC | 1 cut(s) | 278 |
| AflII | CTTAAG | 1 cut(s) | 422 |
| AjnI | CCWGG | 2 cut(s) | 84, 93 |
| AluBI | AGCT | 3 cut(s) | 79, 645, 724 |
| AluI | AGCT | 3 cut(s) | 79, 645, 724 |
| Alw21I | GWGCWC | 1 cut(s) | 465 |
| Alw26I | GTCTC | 1 cut(s) | 720 |
| Alw44I | GTGCAC | 1 cut(s) | 461 |
| AlwI | GGATC | 1 cut(s) | 435 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 236 |
| AoxI | GGCC | 2 cut(s) | 201, 763 |
| ApaLI | GTGCAC | 1 cut(s) | 461 |
| ApoI | RAATTY | 1 cut(s) | 359 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 673, 743 |
| AspS9I | GGNCC | 1 cut(s) | 731 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| BaeGI | GKGCMC | 1 cut(s) | 465 |
| BalI | TGGCCA | 1 cut(s) | 203 |
| BbsI | GAAGAC | 1 cut(s) | 453 |
| Bbv12I | GWGCWC | 1 cut(s) | 465 |
| BccI | CCATC | 1 cut(s) | 193 |
| BciT130I | CCWGG | 2 cut(s) | 86, 95 |
| BclI | TGATCA | 2 cut(s) | 103, 348 |
| BcoDI | GTCTC | 1 cut(s) | 720 |
| BfmI | CTRYAG | 1 cut(s) | 129 |
| BfrI | CTTAAG | 1 cut(s) | 422 |
| BfuAI | ACCTGC | 2 cut(s) | 136, 148 |
| Bme1390I | CCNGG | 2 cut(s) | 86, 95 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmgT120I | GGNCC | 1 cut(s) | 731 |
| BmiI | GGNNCC | 1 cut(s) | 123 |
| BmrFI | CCNGG | 2 cut(s) | 86, 95 |
| BmsI | GCATC | 1 cut(s) | 223 |
| BpiI | GAAGAC | 1 cut(s) | 453 |
| BpuEI | CTTGAG | 1 cut(s) | 704 |
| BsaBI | GATNNNNATC | 1 cut(s) | 831 |
| BsaJI | CCNNGG | 1 cut(s) | 85 |
| Bse1I | ACTGG | 1 cut(s) | 331 |
| Bse3DI | GCAATG | 1 cut(s) | 408 |
| Bse8I | GATNNNNATC | 1 cut(s) | 831 |
| BseBI | CCWGG | 2 cut(s) | 86, 95 |
| BseDI | CCNNGG | 1 cut(s) | 85 |
| BseGI | GGATG | 2 cut(s) | 204, 583 |
| BseJI | GATNNNNATC | 1 cut(s) | 831 |
| BseMI | GCAATG | 1 cut(s) | 408 |
| BseMII | CTCAG | 2 cut(s) | 104, 741 |
| BseNI | ACTGG | 1 cut(s) | 331 |
| BseRI | GAGGAG | 2 cut(s) | 26, 587 |
| BseSI | GKGCMC | 1 cut(s) | 465 |
| BsgI | GTGCAG | 1 cut(s) | 587 |
| BshFI | GGCC | 2 cut(s) | 203, 765 |
| BsiHKAI | GWGCWC | 1 cut(s) | 465 |
| BslFI | GGGAC | 1 cut(s) | 179 |
| BsmAI | GTCTC | 1 cut(s) | 720 |
| BsmFI | GGGAC | 1 cut(s) | 179 |
| BsmI | GAATGC | 1 cut(s) | 151 |
| BsnI | GGCC | 2 cut(s) | 203, 765 |
| Bsp1286I | GDGCHC | 1 cut(s) | 465 |
| Bsp143I | GATC | 4 cut(s) | 103, 348, 427, 697 |
| BspANI | GGCC | 2 cut(s) | 203, 765 |
| BspCNI | CTCAG | 2 cut(s) | 105, 740 |
| BspLI | GGNNCC | 1 cut(s) | 123 |
| BspMAI | CTGCAG | 1 cut(s) | 133 |
| BspMI | ACCTGC | 2 cut(s) | 136, 148 |
| BspPI | GGATC | 1 cut(s) | 435 |
| BspTI | CTTAAG | 1 cut(s) | 422 |
| BsrDI | GCAATG | 1 cut(s) | 408 |
| BsrI | ACTGG | 1 cut(s) | 331 |
| BssECI | CCNNGG | 1 cut(s) | 85 |
| BssMI | GATC | 4 cut(s) | 103, 348, 427, 697 |
| Bst2UI | CCWGG | 2 cut(s) | 86, 95 |
| Bst4CI | ACNGT | 1 cut(s) | 483 |
| Bst6I | CTCTTC | 1 cut(s) | 59 |
| BstAFI | CTTAAG | 1 cut(s) | 422 |
| BstDEI | CTNAG | 3 cut(s) | 113, 727, 735 |
| BstF5I | GGATG | 2 cut(s) | 204, 583 |
| BstKTI | GATC | 4 cut(s) | 106, 351, 430, 700 |
| BstMAI | GTCTC | 1 cut(s) | 720 |
| BstMBI | GATC | 4 cut(s) | 103, 348, 427, 697 |
| BstNI | CCWGG | 2 cut(s) | 86, 95 |
| BstSCI | CCNGG | 2 cut(s) | 84, 93 |
| BstSFI | CTRYAG | 1 cut(s) | 129 |
| BstSLI | GKGCMC | 1 cut(s) | 465 |
| BstV2I | GAAGAC | 1 cut(s) | 453 |
| BstX2I | RGATCY | 1 cut(s) | 427 |
| BstYI | RGATCY | 1 cut(s) | 427 |
| BsuRI | GGCC | 2 cut(s) | 203, 765 |
| BtsCI | GGATG | 2 cut(s) | 204, 583 |
| BtsI | GCAGTG | 1 cut(s) | 609 |
| BtsIMutI | CAGTG | 2 cut(s) | 479, 609 |
| BveI | ACCTGC | 2 cut(s) | 136, 148 |
| CaiI | CAGNNNCTG | 1 cut(s) | 236 |
| Cfr13I | GGNCC | 1 cut(s) | 731 |
| Csp6I | GTAC | 1 cut(s) | 277 |
| CviAII | CATG | 6 cut(s) | 13, 107, 205, 226, 379, 619 |
| CviQI | GTAC | 1 cut(s) | 277 |
| DdeI | CTNAG | 3 cut(s) | 113, 727, 735 |
| DpnI | GATC | 4 cut(s) | 105, 350, 429, 699 |
| DpnII | GATC | 4 cut(s) | 103, 348, 427, 697 |
| DraI | TTTAAA | 1 cut(s) | 543 |
| EaeI | YGGCCR | 1 cut(s) | 201 |
| Eam1104I | CTCTTC | 1 cut(s) | 59 |
| EarI | CTCTTC | 1 cut(s) | 59 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| EcoO109I | RGGNCCY | 1 cut(s) | 731 |
| EcoRII | CCWGG | 2 cut(s) | 84, 93 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 6 cut(s) | 16, 110, 208, 229, 382, 622 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 629, 661 |
| FaqI | GGGAC | 1 cut(s) | 179 |
| FatI | CATG | 6 cut(s) | 12, 106, 204, 225, 378, 618 |
| FbaI | TGATCA | 2 cut(s) | 103, 348 |
| FokI | GGATG | 2 cut(s) | 211, 590 |
| HaeIII | GGCC | 2 cut(s) | 203, 765 |
| Hin1II | CATG | 6 cut(s) | 16, 110, 208, 229, 382, 622 |
| HindIII | AAGCTT | 1 cut(s) | 643 |
| HinfI | GANTC | 4 cut(s) | 90, 257, 449, 789 |
| Hpy166II | GTNNAC | 2 cut(s) | 277, 463 |
| Hpy188I | TCNGA | 7 cut(s) | 114, 313, 336, 353, 432, 487, 702 |
| Hpy188III | TCNNGA | 2 cut(s) | 772, 793 |
| Hpy8I | GTNNAC | 2 cut(s) | 277, 463 |
| HpyAV | CCTTC | 3 cut(s) | 520, 769, 835 |
| HpyCH4III | ACNGT | 1 cut(s) | 483 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 131, 149, 269, 293, 397, 463, 568 |
| HpyF3I | CTNAG | 3 cut(s) | 113, 727, 735 |
| Hsp92II | CATG | 6 cut(s) | 16, 110, 208, 229, 382, 622 |
| Ksp22I | TGATCA | 2 cut(s) | 103, 348 |
| Kzo9I | GATC | 4 cut(s) | 103, 348, 427, 697 |
| LweI | GCATC | 1 cut(s) | 223 |
| MaeIII | GTNAC | 2 cut(s) | 68, 436 |
| MalI | GATC | 4 cut(s) | 105, 350, 429, 699 |
| MboI | GATC | 4 cut(s) | 103, 348, 427, 697 |
| MboII | GAAGA | 3 cut(s) | 76, 229, 458 |
| MfeI | CAATTG | 1 cut(s) | 288 |
| MflI | RGATCY | 1 cut(s) | 427 |
| MhlI | GDGCHC | 1 cut(s) | 465 |
| MlsI | TGGCCA | 1 cut(s) | 203 |
| MluCI | AATT | 5 cut(s) | 27, 288, 344, 359, 796 |
| MluNI | TGGCCA | 1 cut(s) | 203 |
| MlyI | GAGTC | 2 cut(s) | 251, 443 |
| MmeI | TCCRAC | 1 cut(s) | 199 |
| MnlI | CCTC | 9 cut(s) | 47, 108, 112, 512, 521, 565, 568, 587, 778 |
| Mox20I | TGGCCA | 1 cut(s) | 203 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 2 cut(s) | 673, 743 |
| MscI | TGGCCA | 1 cut(s) | 203 |
| MseI | TTAA | 4 cut(s) | 54, 423, 542, 636 |
| Msp20I | TGGCCA | 1 cut(s) | 203 |
| MspCI | CTTAAG | 1 cut(s) | 422 |
| MspR9I | CCNGG | 2 cut(s) | 86, 95 |
| MunI | CAATTG | 1 cut(s) | 288 |
| Mva1269I | GAATGC | 1 cut(s) | 151 |
| MvaI | CCWGG | 2 cut(s) | 86, 95 |
| NdeII | GATC | 4 cut(s) | 103, 348, 427, 697 |
| NlaIII | CATG | 6 cut(s) | 16, 110, 208, 229, 382, 622 |
| NlaIV | GGNNCC | 1 cut(s) | 123 |
| NmuCI | GTSAC | 2 cut(s) | 68, 436 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PaqCI | CACCTGC | 1 cut(s) | 136 |
| PctI | GAATGC | 1 cut(s) | 151 |
| PdmI | GAANNNNTTC | 2 cut(s) | 673, 743 |
| PfeI | GAWTC | 2 cut(s) | 90, 789 |
| PfoI | TCCNGGA | 1 cut(s) | 93 |
| PleI | GAGTC | 2 cut(s) | 251, 443 |
| PpsI | GAGTC | 2 cut(s) | 251, 443 |
| PpuMI | RGGWCCY | 1 cut(s) | 731 |
| Psp5II | RGGWCCY | 1 cut(s) | 731 |
| Psp6I | CCWGG | 2 cut(s) | 84, 93 |
| PspGI | CCWGG | 2 cut(s) | 84, 93 |
| PspN4I | GGNNCC | 1 cut(s) | 123 |
| PspPI | GGNCC | 1 cut(s) | 731 |
| PspPPI | RGGWCCY | 1 cut(s) | 731 |
| PstI | CTGCAG | 1 cut(s) | 133 |
| PstNI | CAGNNNCTG | 1 cut(s) | 236 |
| PsuI | RGATCY | 1 cut(s) | 427 |
| RsaI | GTAC | 1 cut(s) | 278 |
| RsaNI | GTAC | 1 cut(s) | 277 |
| SaqAI | TTAA | 4 cut(s) | 54, 423, 542, 636 |
| Sau3AI | GATC | 4 cut(s) | 103, 348, 427, 697 |
| Sau96I | GGNCC | 1 cut(s) | 731 |
| SchI | GAGTC | 2 cut(s) | 251, 443 |
| ScrFI | CCNGG | 2 cut(s) | 86, 95 |
| SduI | GDGCHC | 1 cut(s) | 465 |
| SetI | ASST | 9 cut(s) | 81, 87, 130, 142, 504, 647, 662, 726, 733 |
| SfaNI | GCATC | 1 cut(s) | 223 |
| SfcI | CTRYAG | 1 cut(s) | 129 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SmlI | CTYRAG | 2 cut(s) | 422, 719 |
| SmoI | CTYRAG | 2 cut(s) | 422, 719 |
| Sse9I | AATT | 5 cut(s) | 27, 288, 344, 359, 796 |
| StyD4I | CCNGG | 2 cut(s) | 84, 93 |
| TaaI | ACNGT | 1 cut(s) | 483 |
| TasI | AATT | 5 cut(s) | 27, 288, 344, 359, 796 |
| TatI | WGTACW | 1 cut(s) | 276 |
| TfiI | GAWTC | 2 cut(s) | 90, 789 |
| Tru1I | TTAA | 4 cut(s) | 54, 423, 542, 636 |
| Tru9I | TTAA | 4 cut(s) | 54, 423, 542, 636 |
| TscAI | CASTG | 2 cut(s) | 486, 609 |
| TseFI | GTSAC | 2 cut(s) | 68, 436 |
| Tsp45I | GTSAC | 2 cut(s) | 68, 436 |
| TspDTI | ATGAA | 6 cut(s) | 230, 353, 371, 561, 594, 704 |
| TspRI | CASTG | 2 cut(s) | 486, 609 |
| Vha464I | CTTAAG | 1 cut(s) | 422 |
| VneI | GTGCAC | 1 cut(s) | 461 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XapI | RAATTY | 1 cut(s) | 359 |
| XmnI | GAANNNNTTC | 2 cut(s) | 673, 743 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |